mRNA_Ecto-sp13_S_contig16472.4666.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16472.4666.1
Unique NamemRNA_Ecto-sp13_S_contig16472.4666.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16472.4666.1 vs. uniprot
Match: D7FWW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWW9_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 9.280e-54
Identity = 105/289 (36.33%), Postives = 159/289 (55.02%), Query Frame = 2 
Query:   29 IFRMLENGCRARIRTSDDSESKTVFLRAGLHHVVLDSPEQADWSNVRDPSA--DIGCPQCKISKHELAKSNHDFRASKRTAEGVDASIEYESKGGTKAERNLREKRHEDVIPKEPNPSKALTFDRLLQSPFDNLHQDALNKSKRQVRFLLDVLDPAGLELVAARLALRQLLPPNASPIGESTTDGGWSGITANQIWTLSSILGLLFAPIFADGRTMGKYIRSAETRAVRERLDANDGTTHRAKEVCQGFRDLIQAISASTFMVRMGSYTDDTLDGLEKRQRESFKTHAR 889
            I R L+NGC+A     D  ++ T  +R GL    LDSP  + W+N +  +A  +  C  C + + +L    +D   + RTA+G+   +   +    K +R+   +    V+P+ PNP   + FDR+     D LHQ ALN  K+ + F++D LDPAG E+V AR A  ++LPPN SP+ + T+ GGWS +T  Q+W +SS    L APIF+    +G+Y+R+     V +R+  + GT      VC  F+DL++A S S F+VR  S+T + L  L+K Q E  K   R
Sbjct:    3 IIRRLQNGCKAEFSIGD-KQTVTALVRLGLLTANLDSPLHSLWTNQKHHNAKTERACQACVVPRRDLGNPKYDIVKNARTADGLREDLSRVAATEKKQDRDKLSRALGVVVPRYPNPQDEVAFDRVEGCGMDILHQSALNSGKKIMGFVMDALDPAGSEIVRARFAWCRMLPPNVSPMADITSAGGWSALTGQQLWLVSSSFPFLLAPIFSSPDNLGRYVRTMVVTEVADRISVDPGTPAGKAAVCNAFQDLVKACSWSCFVVRSPSFTAEGLRALQKSQLEQVKQATR 290
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BLAST of mRNA_Ecto-sp13_S_contig16472.4666.1 vs. uniprot
Match: A0A6H5JE27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE27_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 6.060e-22
Identity = 62/154 (40.26%), Postives = 86/154 (55.84%), Query Frame = 2 
Query:   29 IFRM-LENGCRARIRTSDDSES--------------KTVFLRAGLHHVVLDSPEQADWSNVRDPSADI--GCPQCKISKHELAKSNHDFRASKRTAEGVDASIEYESKGGTKAERNLREKRHEDVIPKEPNPSKALTFDRLLQSPFDNLHQDAL 439
            +FR  + +G +++ R   D ES                V +R GL  ++LDSPE +D +N ++ +      C +CK+ +  L    +D R ++RTAEGVDA IEY  +G TK ER  R K+   V+PK  NP K LTFDR LQ PFD LH D+L
Sbjct:  415 VFRSDMPDGIKSKRRRDQDVESVWEVTNQEENVGVSALVLVRGGLQGLILDSPEHSDRTNTKNANGCTLRSCQRCKVPRRHLGNPRYDIRQNRRTAEGVDADIEYVKQGATKTERVERAKQRGVVVPKVSNPLKKLTFDRQLQVPFDILHADSL 568
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BLAST of mRNA_Ecto-sp13_S_contig16472.4666.1 vs. uniprot
Match: A0A6H5JTN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTN6_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 8.170e-21
Identity = 87/300 (29.00%), Postives = 116/300 (38.67%), Query Frame = 2 
Query:   29 IFRM-LENGCRARIRTSDDSES--------------KTVFLRAGLHHVVLDSPEQADWSNVRDPSADI--GCPQCKISKHELAKSNHDFRASKRTAEGVDASIEYESKGGTKAERNLREKRHEDVIPKEPNPSKALTFDRLLQSPFDNLHQDALNKSKRQVRFLLDVLDPAGLELVAARLALRQLLPPNASPIGESTTDGGWSGITANQIWTLSSILGLLFAPIFADGRTMGKYIRSAETRAVRERLDANDGTTHRAKEVCQGFRDLIQAISASTFMVRMGSYTDDTLDGLEKRQRESFK 877
            +FR  + +G +++ R   D ES                V +R  L  ++LDSPE +D +N ++ +      C +CK+ +  L    +D R ++RTAEGVDA+IEY  +G TK E   R K+   V+PK    SK LTFDR LQ PFD LH D+L                                                                                                         VC+ FRDL++A SASTFMVR+GSYTD  L  LEK QRE  K
Sbjct:  198 VFRSDMPDGIKSKRRRDQDVESVWEVTNQEENVGVSALVLVRGRLQGLILDSPEHSDRTNTKNANGCTLRSCQRCKVPRRHLGNPRYDIRQNRRTAEGVDANIEYVKQGATKTEGVERAKQRGVVVPKV---SKKLTFDRQLQIPFDILHADSL---------------------------------------------------------------------------------------------------------VCRAFRDLMEACSASTFMVRLGSYTDAELRVLEKWQREQVK 389
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BLAST of mRNA_Ecto-sp13_S_contig16472.4666.1 vs. uniprot
Match: A0A6H5LGI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGI1_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.520e-11
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 2 
Query:  464 FLLDVLDPAGLELVAARLALRQLLPPNASPIGESTTDGGWSGITANQIWTLSSILGLLFAPIFAD 658
            F++D LDPAG ++V AR A R++LP N SPI + T+ GGWS +T  Q+W +SSI   L AP+F+ 
Sbjct:  608 FVMDALDPAGSDIVRARFAWRRMLPRNVSPIADITSAGGWSALTGQQLWIVSSIFPFLLAPMFSS 672
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16472.4666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FWW9_ECTSI9.280e-5436.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JE27_9PHAE6.060e-2240.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTN6_9PHAE8.170e-2129.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LGI1_9PHAE1.520e-1150.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16472contigEcto-sp13_S_contig16472:544..3497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1019
Hectar predicted targeting categoryother localisation
Exons5
Cds size891
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16472.4666.1prot_Ecto-sp13_S_contig16472.4666.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16472 554..3379 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462866.1535084-UTR-Ecto-sp13_S_contig16472:543..5531681462866.1535084-UTR-Ecto-sp13_S_contig16472:543..553Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16472 544..553 +
1681462866.223986-UTR-Ecto-sp13_S_contig16472:3379..34971681462866.223986-UTR-Ecto-sp13_S_contig16472:3379..3497Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16472 3380..3497 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462866.1645744-CDS-Ecto-sp13_S_contig16472:553..6401681462866.1645744-CDS-Ecto-sp13_S_contig16472:553..640Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16472 554..640 +
1681462866.177384-CDS-Ecto-sp13_S_contig16472:1070..14121681462866.177384-CDS-Ecto-sp13_S_contig16472:1070..1412Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16472 1071..1412 +
1681462866.1894054-CDS-Ecto-sp13_S_contig16472:1579..18101681462866.1894054-CDS-Ecto-sp13_S_contig16472:1579..1810Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16472 1580..1810 +
1681462866.1984386-CDS-Ecto-sp13_S_contig16472:2337..25381681462866.1984386-CDS-Ecto-sp13_S_contig16472:2337..2538Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16472 2338..2538 +
1681462866.214387-CDS-Ecto-sp13_S_contig16472:3349..33791681462866.214387-CDS-Ecto-sp13_S_contig16472:3349..3379Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16472 3350..3379 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16472.4666.1

>prot_Ecto-sp13_S_contig16472.4666.1 ID=prot_Ecto-sp13_S_contig16472.4666.1|Name=mRNA_Ecto-sp13_S_contig16472.4666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=297bp
MLPLTSIFRMLENGCRARIRTSDDSESKTVFLRAGLHHVVLDSPEQADWS
NVRDPSADIGCPQCKISKHELAKSNHDFRASKRTAEGVDASIEYESKGGT
KAERNLREKRHEDVIPKEPNPSKALTFDRLLQSPFDNLHQDALNKSKRQV
RFLLDVLDPAGLELVAARLALRQLLPPNASPIGESTTDGGWSGITANQIW
TLSSILGLLFAPIFADGRTMGKYIRSAETRAVRERLDANDGTTHRAKEVC
QGFRDLIQAISASTFMVRMGSYTDDTLDGLEKRQRESFKTHARERP*
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mRNA from alignment at Ecto-sp13_S_contig16472:544..3497+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16472.4666.1 ID=mRNA_Ecto-sp13_S_contig16472.4666.1|Name=mRNA_Ecto-sp13_S_contig16472.4666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2954bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16472:544..3497+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGCAAGAGATGCTTCCTCTGACTTCAATCTTTCGCATGCTCGAGAACG
GCTGCCGCGCGAGAATCCGGACGAGTGATGATTCGGAGTCCAAGACGGTG
AGTGCACGAAGACAGTAAAACAGTAAACTGAGCTTGGTGACGGTGTGGAC
CCGAGGTCTTTTGGGGTGAAGACACGGGAGTGGAGTAGGTTGAATGCCCC
TGTCCTACATCCGGATTCAAAACCTATGACCGCGGATTTCGTAGTGAACT
ACTTCTCCATCATACGCCCAGCTTTGACTGACGTATCTCGCTTATCCACT
GAACGGGCCTGGTGTCACGCATGTAGTCCTGCGTAACGACACAGGTTCGG
CAGCAGCGTGGACGTCATCATCCGCGCCGCCTGTGCGGTGTTTTGTGCGG
AGAACTTTCTTAACCGGTCACACTAATGTACAATTTTTAAATGTCACCAA
CCGCACTCTTCCATCCACTACACATGAGGAAACACTGCGGCTGTATGACC
CACCCACTACTTTCTGTCTCCCTTCAGGTTTTTCTCAGGGCGGGACTGCA
CCACGTGGTGCTCGACTCCCCCGAACAAGCGGACTGGTCAAACGTCAGGG
ACCCCTCTGCCGACATCGGCTGTCCCCAGTGCAAGATCTCGAAACACGAA
CTCGCCAAATCGAACCACGACTTCCGGGCCAGCAAGCGAACCGCAGAGGG
AGTAGACGCGAGCATCGAATACGAGAGCAAGGGAGGAACGAAGGCCGAGC
GGAACCTGCGCGAAAAACGGCATGAAGACGTCATCCCCAAGGAGCCTAAC
CCGTCGAAGGCGCTAACCTTCGACCGGCTACTTCAATCGCCCTTCGACAA
TCTTCATCAGGATGCCCTGGCAAGTATCCGAAATCTAGACCACGCACCGT
GTTTTGCTCCGTACGACCTATGTTGCGTTGCTCTATAATGGTCTGCACCC
TCCATCCCTCACTGAGCAGCGGTTCACTTGGAAGTTCTTACTCTCGTTGT
CCCTCTTTGCCTCATCGCGAACTGCTTCCTCTACAGAACAAGAGCAAGCG
CCAAGTTCGGTTCTTGCTGGACGTGCTTGACCCCGCCGGACTCGAGCTTG
TGGCCGCAAGGTTGGCCCTTCGTCAGCTCCTCCCCCCCAACGCGTCGCCA
ATCGGAGAGAGTACCACAGACGGCGGGTGGTCTGGTATAACGGCAAACCA
GATCTGGACCCTGTCAAGCATCCTTGGCCTCCTGTTTGCGCCTATCTTCG
CTGACGGCAGGACAATGGTGCGTACTACATGAAACTAGGCAACATGGAGC
TAGGCGTTGACTTCTTCCCGCAGTTCGATGCTTAGTAGCCTGTTCACCGA
CCGATGGCCTAGTAAGTGTAACGTTATTACCCCGAGTGTTGAAACAATCT
TTCGCCATCATTGCTTGCGTCCAAGGCCCACCCAGCAGCTAAGCTCGACA
AAGTTAATGGTCCCTTCCCATCGCATCGCTCGGCTACCCCTGGTAAGTCT
TGCAACGATCAGGCAATATCTTCCGGTTGTCAATATTCGCCAACGTGCCG
ATATTTGTTTACCAAGTTTGAGGTCACCTTCGCTCGTGCTTTTCTTCTCA
ACGTTTGTTTTGTTTCCTTGCTCTCACTTCCCCCGCACCACCGCCCACCC
CCTTTCGTCAATTTCCTGCCAACCACAACTAGTTTTCTCTCGCCACATCC
TCGACTTGGAACTTGCACTACTTTGCTTTGGTACACACGACCTTGTCACT
GCTCCAAGCCCCCTCCCCGTTGTGAACGTTCAAATCACGACCAGGGTAAG
TACATTCGATCCGCGGAGACAAGAGCTGTGCGCGAACGACTCGATGCTAA
CGACGGTACCACCCACAGAGCGAAGGAGGTGTGCCAGGGCTTTCGGGACC
TGATTCAAGCGATAAGTGCCAGCACCTTCATGGTTCGGATGGGGTCGTAT
ACCGACGACACCCTCGACGGCCTGGAGAAACGGCAGAGAGAATCGGTGGG
TTGAATGATTTAAGATTTAAAGTTGCAGAGTGTTCGTGCGTATGACCGAT
TTTAGTTGACCGGTCATAACGCTTTGCTGCGGTCATGGAATTCGTCATTT
TTTTCACGTACGTGGTGCCCATGATGGCCTTGACAAGACCCAGCAATAAT
TTCTTTTTTGATGAGATCGAAGAAAATAGTACTTCATATACTTCGAAGCA
CATGTTTTCAAGAGAAACATTTTGGGAAAACACATGAATTATCAATTGGA
GTTGTAGAAAAAAGAAACCGAGTCGGAAACATAAATAATTTTATACCTGC
AACGTCGACGAACATTTTCCCGTAGTTGATATTACACCTTGAGGCCGAGT
CTTACGGCGTGATTATTTCCGGATTGGATTGGGGGGGAGGGTCCTTTTCT
GAGCCAAAAAAATAATTTGGGCGTCTTGCGGGTAGGAAAATGGCAGTTTC
CAACAGCCCAAAATCCAACAGCGCCGTTTCCAACAGCGATTTCGGCCGGC
CTGTTAGAAAACTGGCCCATTTTCCAACAGCGATCATGTTGGAATATCGC
TGTTAGAAATGGGGGGGGTACCCCTTGGTCACACCCCGATCGTGCCAGAA
CGAGGAACTACACCGTCTGCTGGCCAAACACAGGCCAGTATCATCAGGTC
ATGCACAAACCCTCTGCAGGTATCTAAAATTTCGGGCGTTCTGCGTCGTG
TTGACCGCACAAAGGCGAAAACGTCAACCCAACCACATTGCTCTGCTGAC
GTTCTTGCCTTTGGGCCGAAAAGAGCCGTTTTTGCTCCTGCTGTATGTGT
GACCAGTTCAAAACGCATGCCAGAGAGAGGCCTTAAGCCGTCGACATCCT
TTAACTGCAGCCATTGCCCTGTGGCCATACTCAAACCCTATGCTCGCGTA
CCAGAAACAGAGCGTATTGTCCAGTTTTGATTGCGCGCGGGCTGCAAACG
TGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16472:544..3497+

>mRNA_Ecto-sp13_S_contig16472.4666.1 ID=mRNA_Ecto-sp13_S_contig16472.4666.1|Name=mRNA_Ecto-sp13_S_contig16472.4666.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=891bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16472:544..3497+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTCCTCTGACTTCAATCTTTCGCATGCTCGAGAACGGCTGCCGCGC
GAGAATCCGGACGAGTGATGATTCGGAGTCCAAGACGGTTTTTCTCAGGG
CGGGACTGCACCACGTGGTGCTCGACTCCCCCGAACAAGCGGACTGGTCA
AACGTCAGGGACCCCTCTGCCGACATCGGCTGTCCCCAGTGCAAGATCTC
GAAACACGAACTCGCCAAATCGAACCACGACTTCCGGGCCAGCAAGCGAA
CCGCAGAGGGAGTAGACGCGAGCATCGAATACGAGAGCAAGGGAGGAACG
AAGGCCGAGCGGAACCTGCGCGAAAAACGGCATGAAGACGTCATCCCCAA
GGAGCCTAACCCGTCGAAGGCGCTAACCTTCGACCGGCTACTTCAATCGC
CCTTCGACAATCTTCATCAGGATGCCCTGAACAAGAGCAAGCGCCAAGTT
CGGTTCTTGCTGGACGTGCTTGACCCCGCCGGACTCGAGCTTGTGGCCGC
AAGGTTGGCCCTTCGTCAGCTCCTCCCCCCCAACGCGTCGCCAATCGGAG
AGAGTACCACAGACGGCGGGTGGTCTGGTATAACGGCAAACCAGATCTGG
ACCCTGTCAAGCATCCTTGGCCTCCTGTTTGCGCCTATCTTCGCTGACGG
CAGGACAATGGGTAAGTACATTCGATCCGCGGAGACAAGAGCTGTGCGCG
AACGACTCGATGCTAACGACGGTACCACCCACAGAGCGAAGGAGGTGTGC
CAGGGCTTTCGGGACCTGATTCAAGCGATAAGTGCCAGCACCTTCATGGT
TCGGATGGGGTCGTATACCGACGACACCCTCGACGGCCTGGAGAAACGGC
AGAGAGAATCGTTCAAAACGCATGCCAGAGAGAGGCCTTAA
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