mRNA_Ecto-sp13_S_contig16470.4665.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig16470.4665.1 vs. uniprot
Match: D8LE41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE41_ECTSI) HSP 1 Score: 327 bits (837), Expect = 9.230e-111 Identity = 163/170 (95.88%), Postives = 164/170 (96.47%), Query Frame = 1
Query: 1 MSRRGLPVGAGKSRLAGFGDLGRTMTATRGILTGPFSGPFSPGSTSSPKRPEALPSGEKPALINRYIEPPEDGLTRYPTFRSPQGVLRGLDYLGTTVFAISGTVTAGQVGMDLLGCIIVGTITATGGGTVRDVLLGNTPVFWMHETEYLWMCLATTVGIFFLWSYLAERG 510
MSRRG P GAGKSRLAGFGDL + ATRGILTGPFSGPFSPGSTSSPKRPEALPSGEKPALINRYIEPPEDGLTRYPTFRSPQGVLRGLDYLGTTVFAISGTVTAGQVGMDLLGCIIVGTITATGGGTVRDVLLGNTPVFWMHETEYLWMCLATTVGIFFLWSYLAERG
Sbjct: 1 MSRRGFPGGAGKSRLAGFGDL--DLAATRGILTGPFSGPFSPGSTSSPKRPEALPSGEKPALINRYIEPPEDGLTRYPTFRSPQGVLRGLDYLGTTVFAISGTVTAGQVGMDLLGCIIVGTITATGGGTVRDVLLGNTPVFWMHETEYLWMCLATTVGIFFLWSYLAERG 168
BLAST of mRNA_Ecto-sp13_S_contig16470.4665.1 vs. uniprot
Match: A0A6H5JGY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY7_9PHAE) HSP 1 Score: 324 bits (831), Expect = 1.090e-108 Identity = 159/170 (93.53%), Postives = 163/170 (95.88%), Query Frame = 1
Query: 1 MSRRGLPVGAGKSRLAGFGDLGRTMTATRGILTGPFSGPFSPGSTSSPKRPEALPSGEKPALINRYIEPPEDGLTRYPTFRSPQGVLRGLDYLGTTVFAISGTVTAGQVGMDLLGCIIVGTITATGGGTVRDVLLGNTPVFWMHETEYLWMCLATTVGIFFLWSYLAERG 510
MSRRGLPVGAGKSRLAGFGDL TM TRGILTGPFSGPFSPGSTSSPK P+ALPS EKPALINRYIEPPEDGLTRYPTFRSPQGVLRGLDYLGTTVFAISGTVTAG VGMDLLGCIIVGTITATGGGTVRD+LLGNTPVFWMHETEYLWMCLAT+VG+FFLWSYLAERG
Sbjct: 81 MSRRGLPVGAGKSRLAGFGDLDLTMATTRGILTGPFSGPFSPGSTSSPKPPQALPSREKPALINRYIEPPEDGLTRYPTFRSPQGVLRGLDYLGTTVFAISGTVTAGHVGMDLLGCIIVGTITATGGGTVRDMLLGNTPVFWMHETEYLWMCLATSVGVFFLWSYLAERG 250
BLAST of mRNA_Ecto-sp13_S_contig16470.4665.1 vs. uniprot
Match: A0A836CDZ5_9STRA (UPF0126 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDZ5_9STRA) HSP 1 Score: 161 bits (407), Expect = 6.040e-46 Identity = 80/112 (71.43%), Postives = 87/112 (77.68%), Query Frame = 1
Query: 175 KPALINRYIEPPEDGLTRYPTFRSPQGVLRGLDYLGTTVFAISGTVTAGQVGMDLLGCIIVGTITATGGGTVRDVLLGNTPVFWMHETEYLWMCLATTVGIFFLWSYLAERG 510
KP + EDGLTRYP+ SPQGVLRGLD GT VFA SG VTAGQ GMDLLGC IVGTITA GGGTVRD+LLGNTPVFWM ETEYL++CLA VG FF +S LAE+G
Sbjct: 9 KPKKLPXXXXXHEDGLTRYPSLSSPQGVLRGLDLFGTVVFAYSGCVTAGQAGMDLLGCTIVGTITAVGGGTVRDLLLGNTPVFWMTETEYLYICLAAAVGTFFTYSALAEQG 120
BLAST of mRNA_Ecto-sp13_S_contig16470.4665.1 vs. uniprot
Match: A0A835ZGC7_9STRA (UPF0126 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC7_9STRA) HSP 1 Score: 129 bits (323), Expect = 1.140e-33 Identity = 57/97 (58.76%), Postives = 71/97 (73.20%), Query Frame = 1
Query: 208 PEDGLTRYPTFRSPQGVLRGLDYLGTTVFAISGTVTAGQVGMDLLGCIIVGTITATGGGTVRDVLLGNTPVFWMHETEYLWMCLATTVGIFFLWSYL 498
P + +TRYP+ RS G+LR LDYLGT FA G + AG+ GMDLLGCI +G ITA GGGT RD+LLG TPVFW+ E EYL MC+ T++ F+ W +L
Sbjct: 42 PRESMTRYPSLRSAGGLLRSLDYLGTVAFATGGAICAGRAGMDLLGCIEIGVITAMGGGTTRDLLLGQTPVFWLQEVEYLAMCIVTSIATFYAWPHL 138
BLAST of mRNA_Ecto-sp13_S_contig16470.4665.1 vs. uniprot
Match: A0A0G4I443_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I443_9ALVE) HSP 1 Score: 127 bits (319), Expect = 7.470e-33 Identity = 61/122 (50.00%), Postives = 82/122 (67.21%), Query Frame = 1
Query: 130 STSSPKRPEALPSGEKPALINRYIEPPEDGLTRYPTFRSPQGVLRGLDYLGTTVFAISGTVTAGQVGMDLLGCIIVGTITATGGGTVRDVLLGNTPVFWMHETEYLWMCLATTVGIFFLWSY 495
S + P++ E + + P + P DG+TRYP+ S GVLRG DYLGT F++SG++ A G+D LGC +VGT TA GGGT+RD+L+GN PVFWM ETEY+WM L T+ FFL+ +
Sbjct: 28 SVTMPEKMEETETAKDPLPNPPSVHP--DGMTRYPSLSSMHGVLRGCDYLGTISFSVSGSLIAATAGLDALGCTLVGTTTAVGGGTIRDLLIGNRPVFWMDETEYVWMALITSAAAFFLFDH 147
BLAST of mRNA_Ecto-sp13_S_contig16470.4665.1 vs. uniprot
Match: A0A6T5MA33_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5MA33_HETAK) HSP 1 Score: 127 bits (318), Expect = 2.160e-32 Identity = 69/124 (55.65%), Postives = 81/124 (65.32%), Query Frame = 1
Query: 136 SSPKRPEALPSGEKPALINRYIEPPEDGLTRYPTFRSPQGVLRGLDYLGTTVFAISGTVTAGQVGMDLLGCIIVGTITATGGGTVRDVLLGNTPVFWMHETEYLWMCLATTVGIFFLWSYLAER 507
S+ K P P KP + DG+ R+P+ S G+LRGLDY GT VFA+ G+VTAG GMDLLGC IVGT+TA GGGTVRD+LLGN PVFWM ETEY+ + LA FF W YL E
Sbjct: 85 STNKPPAEAPPAAKPPVHT-------DGMPRFPS-TSAGGLLRGLDYFGTVVFALGGSVTAGLAGMDLLGCTIVGTVTAVGGGTVRDLLLGNFPVFWMLETEYVLLSLACAWAGFFGWDYLHEH 200
BLAST of mRNA_Ecto-sp13_S_contig16470.4665.1 vs. uniprot
Match: A0A7S1TDV4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDV4_9RHOD) HSP 1 Score: 115 bits (288), Expect = 7.110e-29 Identity = 60/97 (61.86%), Postives = 68/97 (70.10%), Query Frame = 1
Query: 214 DGLTRYPTFRSPQGVLRGLDYLGTTVFAISGTVTAGQVGMDLLGCIIVGTITATGGGTVRDVLLGNTPVFWMHETEYLWMCLATTVGIFFLWSYLAE 504
DG+ R+P + S G+LRGLDY GT VFA SGTV A GMDLLGC +VG ITA GGGTVRD+ LGN PVFWM ETEYL +CL T+ LW L
Sbjct: 6 DGMPRFPNW-SAGGLLRGLDYGGTIVFAFSGTVQAAAHGMDLLGCSVVGAITAVGGGTVRDLFLGNRPVFWMVETEYLILCLITSGLTLALWPVLTR 101
BLAST of mRNA_Ecto-sp13_S_contig16470.4665.1 vs. uniprot
Match: A0A7S1XFC8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XFC8_9RHOD) HSP 1 Score: 117 bits (292), Expect = 1.270e-28 Identity = 64/111 (57.66%), Postives = 72/111 (64.86%), Query Frame = 1
Query: 178 PALINRYIEPPE--DGLTRYPTFRSPQGVLRGLDYLGTTVFAISGTVTAGQVGMDLLGCIIVGTITATGGGTVRDVLLGNTPVFWMHETEYLWMCLATTVGIFFLWSYLAE 504
P L RY DG+ R+P + S G+LRGLDY GT VFA SGTV A GMDLLGC +VG ITA GGGTVRD+ LGN PVFWM ETEYL +CL T+ LW L
Sbjct: 82 PGLPKRYSSSSSMVDGMPRFPNW-SAGGLLRGLDYGGTIVFAFSGTVQAAAHGMDLLGCSVVGAITAVGGGTVRDLFLGNRPVFWMVETEYLILCLITSGLTLALWPVLTR 191
BLAST of mRNA_Ecto-sp13_S_contig16470.4665.1 vs. uniprot
Match: L1K029_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K029_GUITC) HSP 1 Score: 112 bits (281), Expect = 1.170e-27 Identity = 60/120 (50.00%), Postives = 81/120 (67.50%), Query Frame = 1
Query: 163 PSGEKPALINRYIEPPEDGLTRYPTFRSPQGVLRGLDYLGTTVFAISGTVTAGQVGMDLLGCIIVGTITATGGGTVRDVLLGNTP-----VFWMHETEYLWMCLATTVGIFFLWSYLAER 507
PSGE A ++E D L+RYP S G+LR DYLGT FA++GT+TA GMDLLGC+++GTITA GGGT+RD+LLG+ FWM E EYLW+ + ++V FF W++ A++
Sbjct: 5 PSGE--AAGKNHLE---DRLSRYPEL-SVGGILRAGDYLGTATFAMTGTLTAASSGMDLLGCVVIGTITAVGGGTIRDMLLGHENGKSKRAFWMDEQEYLWISILSSVMTFFWWNHAAQQ 118
BLAST of mRNA_Ecto-sp13_S_contig16470.4665.1 vs. uniprot
Match: A0A7S4JJL9_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4JJL9_GUITH) HSP 1 Score: 112 bits (281), Expect = 6.910e-27 Identity = 60/120 (50.00%), Postives = 81/120 (67.50%), Query Frame = 1
Query: 163 PSGEKPALINRYIEPPEDGLTRYPTFRSPQGVLRGLDYLGTTVFAISGTVTAGQVGMDLLGCIIVGTITATGGGTVRDVLLGNTP-----VFWMHETEYLWMCLATTVGIFFLWSYLAER 507
PSGE A ++E D L+RYP S G+LR DYLGT FA++GT+TA GMDLLGC+++GTITA GGGT+RD+LLG+ FWM E EYLW+ + ++V FF W++ A++
Sbjct: 109 PSGE--AAGKNHLE---DRLSRYPEL-SVGGILRAGDYLGTATFAMTGTLTAASSGMDLLGCVVIGTITAVGGGTIRDMLLGHENGKSKRAFWMDEQEYLWISILSSVMTFFWWNHAAQQ 222 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16470.4665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig16470.4665.1 >prot_Ecto-sp13_S_contig16470.4665.1 ID=prot_Ecto-sp13_S_contig16470.4665.1|Name=mRNA_Ecto-sp13_S_contig16470.4665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=170bp MSRRGLPVGAGKSRLAGFGDLGRTMTATRGILTGPFSGPFSPGSTSSPKRback to top mRNA from alignment at Ecto-sp13_S_contig16470:62..3314- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig16470.4665.1 ID=mRNA_Ecto-sp13_S_contig16470.4665.1|Name=mRNA_Ecto-sp13_S_contig16470.4665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3253bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16470:62..3314- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16470:62..3314- >mRNA_Ecto-sp13_S_contig16470.4665.1 ID=mRNA_Ecto-sp13_S_contig16470.4665.1|Name=mRNA_Ecto-sp13_S_contig16470.4665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16470:62..3314- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |