mRNA_Ecto-sp13_S_contig1647.4663.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1647.4663.1
Unique NamemRNA_Ecto-sp13_S_contig1647.4663.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1647.4663.1 vs. uniprot
Match: A0A6H5JH73_9PHAE (CRAL-TRIO domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JH73_9PHAE)

HSP 1 Score: 731 bits (1887), Expect = 7.720e-265
Identity = 375/406 (92.36%), Postives = 383/406 (94.33%), Query Frame = 1
Query:   55 MTTRSWQPLCYVLLLTLSSCQRASCTIESNPVPSTAAATTAVLS--DSAQ-DNHHRQQVLETDDIGGGDPDSCLGSQHQHQRQRGENMVVDGEEGTNKKPHSPLALDGDEAVEVRKGEEAAAASTTTAPGSTADDMEDEGQEGVDSISIPERYIVGCGGDVAEAERRWKATVEWRKENKVDEILETPQPHFHECRQVFPVFLHGRSRKGMPVLWERIGKVDLAKANELELPLSVLTPNYVFLNECVWRLILDKGENDNDDAQFITVEDVAGVRPWHLTPKVLSVLRALTGTMKAHYVERCHKSYIINAPRAFTALWRVVSAMLDARTRAKISILGTNYLEEMKEEIDVSQIPPEYGGSSGRAIDDSDDERKIQALVARLNSAAEGQGIPPKAAGDDGKPTDLTGKS 1263
            MTTRSWQP+CYVL+L LSSCQRASC+IE NPVPSTAAATTAVLS  DSA  D   RQQV ETDDIGGGDPDSCLGSQHQHQRQRGE+MVVDGEEGTNK PHSP ALDGDEAVEV K EEAAA STTTAPGSTADDMED+GQEGVDS SIPERYIVGCGGDVAEA RRWKATVEWRKENKVDEILETPQPHFHECRQVFPVFLHGRSRKGMPVLWERIGKVDLAKANELELPLSVLTPNYVFLNECVWRLILD+GENDNDDAQFITVEDVAGVRPWHLTPKVLSVLRALTGTMKAHYVERCHKSYIINAPRAFTALWRVVSAMLD RTRAKISILGTNYLEEMKEEID+SQIPPEYGGSSGRAIDDSDDERKIQALVA LNSAAEGQG+ PKAAGDDGK   LTGKS
Sbjct:    1 MTTRSWQPICYVLVLALSSCQRASCSIEGNPVPSTAAATTAVLSLSDSAPPDXXXRQQVPETDDIGGGDPDSCLGSQHQHQRQRGEDMVVDGEEGTNKNPHSPPALDGDEAVEVLKDEEAAAXSTTTAPGSTADDMEDKGQEGVDSSSIPERYIVGCGGDVAEAGRRWKATVEWRKENKVDEILETPQPHFHECRQVFPVFLHGRSRKGMPVLWERIGKVDLAKANELELPLSVLTPNYVFLNECVWRLILDRGENDNDDAQFITVEDVAGVRPWHLTPKVLSVLRALTGTMKAHYVERCHKSYIINAPRAFTALWRVVSAMLDTRTRAKISILGTNYLEEMKEEIDISQIPPEYGGSSGRAIDDSDDERKIQALVALLNSAAEGQGMAPKAAGDDGKSAYLTGKS 406          
BLAST of mRNA_Ecto-sp13_S_contig1647.4663.1 vs. uniprot
Match: A0A6H5LAB2_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAB2_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 8.750e-48
Identity = 101/253 (39.92%), Postives = 155/253 (61.26%), Query Frame = 1
Query:  490 IPERYIVGCGGDVAEAERRWKATVEWRKENKVDEILETPQPHFHECRQVFPVFLHGRSRKGMPVLWERIGKVDLAKAN-ELELPLSVLTPNYVFLNECVWRLILDKGENDNDDAQFITVEDVAGVRPWHLTPKVLSVLRALTGTMKAHYVERCHKSYIINAPRAFTALWRVVSAMLDARTRAKISILGTNYLEEMKEEIDVSQIPPEYGGSSGRAIDDSDDERKIQALVARLNSAAEGQGI---PPKAAGDDG 1236
            IP RY+    G+   A  RWKAT++WRKEN++D IL  PQ  FH+ R+ FP  + GRSR G  V++E++G VD+     +L + + +L  +++F++E ++R++        D AQ I +ED+  VR   L  K+   ++A+    + HYVERCHK++++NAP  F   +RVVS  L ARTR KI ILG++ L  +++EID   +P EYGG+    + DS +ER ++ LV  +N+ A+ +      PK  GDDG
Sbjct:  130 IPARYVRAFCGNEKHALERWKATLKWRKENEIDAILNEPQQFFHDIRRYFPSHMSGRSRGGHIVVYEKLGAVDMRTLRRKLGVTVPMLLRHWIFVSEYMYRVL-----QPTDSAQQINIEDMKDVRIQTLAGKIQEYVKAVAQLARLHYVERCHKTFVVNAPAWFGLSFRVVSPFLSARTRQKIRILGSD-LTVLQDEIDPQLLPVEYGGTMTEPVSDSPEERNLRRLVDAINANADAEATVAATPKN-GDDG 375          
BLAST of mRNA_Ecto-sp13_S_contig1647.4663.1 vs. uniprot
Match: A0A835Z260_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z260_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.790e-43
Identity = 87/263 (33.08%), Postives = 149/263 (56.65%), Query Frame = 1
Query:  394 GEEAAAASTTTAPGSTADDMEDEGQEGVDSISIPERYIVGCGGDVAEAERRWKATVEWRKENKVDEILETPQPHFHECRQVFPVFLHGRSRKGMPVLWERIGKVDLAKANELELPLSVLTPNYVFLNECVWRLILDKGENDNDDAQFITVEDVAGVRPWHLTPKVLSVLRALTGTMKAHYVERCHKSYIINAPRAFTALWRVVSAMLDARTRAKISILGTNYLEEMKEEIDVSQIPPEYGGSSGRAIDDSDDERKIQALVARL 1182
            G+++++AS +  P +    + D+G  G   + IP RYI G  GD+AEA RRW  T++WRK  KVD +L+ PQ HF   ++ +P ++  R++ G  V +E  G+ DL K  E  + +  L  +Y+++ E +WR  LD GE    +++ +++ D+ GV       +V   +      + AHY ER  K +++NAP  F  +W+V+S ++ A TRAK+ + G  Y++++ E ID+  IP + GG        SD+E  ++  V ++
Sbjct:   14 GQDSSSASVSATPATNGQPLLDDGYPG--DLEIPIRYIKGMEGDMAEARRRWVETLKWRKSYKVDTMLDEPQLHFDAIKKYYPHYVSKRAKNGCLVYYEIPGETDLKKLRENGVDIDQLIRHYIYITEFIWRR-LDTGE----ESKLLSIMDLRGVSLAQFAGEVREYMVRAAKLIGAHYPERSFKIFVLNAPWWFNMVWKVLSPLMHANTRAKVVVCGATYMDKLSELIDIESIPQDIGGRDANYGLKSDEEVALKEHVYKV 269          
BLAST of mRNA_Ecto-sp13_S_contig1647.4663.1 vs. uniprot
Match: W2QZT3_PHYPN (CRAL-TRIO domain-containing protein n=24 Tax=Phytophthora TaxID=4783 RepID=W2QZT3_PHYPN)

HSP 1 Score: 168 bits (426), Expect = 6.240e-43
Identity = 98/278 (35.25%), Postives = 155/278 (55.76%), Query Frame = 1
Query:  355 LALDGDEAVEVRKGEEAAAASTTTAPGSTADDMEDEGQEGVDS--ISIPERYIVGCGGDVAEAERRWKATVEWRKENKVDEILETPQPHFHECRQVFPVFLHGRSRKGMPVLWERIGKVDLAKANELELPLSVLTPNYVFLNECVWRLILDKGENDNDDAQFITVEDVAGVRPWHLTPKVLSVLRALTGTMKAHYVERCHKSYIINAPRAFTALWRVVSAMLDARTRAKISIL-GTNYLEEMKEEIDVSQIPPEYGGSSGRAIDDSDDERKIQALVAR 1179
            L +D  E +E  + +E A  S T +P S  D + +     +    I+   R+I G  GD  +   R+ AT+EWRK+N +D IL TP P+F   ++ +P + HGR+R G+PV +ER GK+DL       L +  L  +Y+++ E +WR++       ND  + ITV DV G+  + L  +VL  ++  +    AHY ER    +IIN P  F  +WR+V  M+D  TR K+ +L G+  L+E++  ID+  IP ++GG  G A+ DS++E  + A V +
Sbjct:  320 LTVDRIEVIEADQDKEPAL-SETASPVSDIDGITESETNAISGGPIAFSPRFIAGEKGDEEKGRARYLATLEWRKDNNIDNILVTPHPNFETIKKYYPQYFHGRTRDGLPVYYERPGKIDLPALKREGLSIDDLLRHYMYITEYLWRVV-----EPNDSGRSITVLDVTGIGMYDLGGEVLDFIKRASAFTGAHYPERSAHIFIINIPGWFNMIWRMVKPMIDPVTREKVHMLKGSAILKELETLIDLENIPSDFGGE-GVALGDSEEEHALAAHVKK 590          
BLAST of mRNA_Ecto-sp13_S_contig1647.4663.1 vs. uniprot
Match: A0A3M6VID9_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VID9_9STRA)

HSP 1 Score: 170 bits (431), Expect = 6.440e-43
Identity = 91/233 (39.06%), Postives = 140/233 (60.09%), Query Frame = 1
Query:  484 ISIPERYIVGCGGDVAEAERRWKATVEWRKENKVDEILETPQPHFHECRQVFPVFLHGRSRKGMPVLWERIGKVDLAKANELELPLSVLTPNYVFLNECVWRLILDKGENDNDDAQFITVEDVAGVRPWHLTPKVLSVLRALTGTMKAHYVERCHKSYIINAPRAFTALWRVVSAMLDARTRAKISIL-GTNYLEEMKEEIDVSQIPPEYGGSSGRAIDDSDDERKIQALVAR 1179
            I+   R+I G  GDV +   R+ AT+EWRKEN +D+IL TP   F   ++ +P F HGR+R G+PV +ER GK+DLA      L +  L  +Y+++ E +WR++       ND+A+ +TV DVAG+  + L  +VL  ++  +    AHY ER  + +IIN P  F  +WR+V  ++D  TR K+ +L G+  L E+++ ID   IP ++GG  G A+ DSD+E  + A V +
Sbjct:  532 IAFSPRFIAGEKGDVEKGRARYVATLEWRKENGIDDILVTPHRTFEIFKRYYPQFFHGRTRDGLPVYYERPGKIDLAALKREGLSIDDLLRHYMYITEYLWRVL-----EPNDEARSMTVLDVAGIGMYDLGGEVLDFIKRASAFTGAHYPERSARIFIINTPGWFNMVWRMVKPLIDPVTREKVHMLKGSGILVELEKLIDRENIPSDFGGD-GTALGDSDEEHALAAHVQK 758          
BLAST of mRNA_Ecto-sp13_S_contig1647.4663.1 vs. uniprot
Match: A0A7R9U9K9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9K9_9STRA)

HSP 1 Score: 163 bits (412), Expect = 9.550e-43
Identity = 90/240 (37.50%), Postives = 138/240 (57.50%), Query Frame = 1
Query:  472 GVDSISIPERYIVGCGGDVAEAERRWKATVEWRKENKVDEILETPQPHFHECRQVFPVFLHGRSRKGMPVLWERIGKVDLAKANELELPLSVLTPNYVFLNECVWRLILDKGENDNDDAQFITVEDVAGVRPWHLTPKVLSVLRALTGTMKAHYVERCHKSYIINAPRAFTALWRVVSAMLDARTRAKISILGTNYLEEMKEEIDVSQIPPEYGGSSGRAIDDSDDERKIQALVARLNSA 1191
            G ++  +PER+++  GGD+  A +R+ AT  WR+E+++D +L TP+P F + +++FP FLHGRSRKG  V +ER+G +D  +     L    LT + VFL E ++  +    +    DA+ + V DV G+    L  ++LS L+  T  M+AHY ER    +IINAP  FT+ WRVV  ++  +TRA+I ILG N+ +E+   I  +  P EY    G  +     E  +   V  LNS+
Sbjct:  121 GGEASMVPERFLLAEGGDLERASQRFAATQLWREEHELDRVLSTPRPTFDKVKRLFPHFLHGRSRKGNVVRYERLGDIDAGRLAASGLSAVDLTNHLVFLAEYIFSHL----DAHRPDAKVLVVCDVKGISIGSLKGEILSFLQMSTQVMQAHYPERMESMFIINAPFWFTSAWRVVGVLMAPQTRARIKILGANFQDELAAYIPPNGAPFEYVDGGGLPLGRDPQELSLLDFVRGLNSS 356          
BLAST of mRNA_Ecto-sp13_S_contig1647.4663.1 vs. uniprot
Match: G4YXA9_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YXA9_PHYSP)

HSP 1 Score: 167 bits (422), Expect = 7.460e-42
Identity = 96/281 (34.16%), Postives = 155/281 (55.16%), Query Frame = 1
Query:  355 LALDGDEAVEVRKGEEAAAASTTTAPGSTADDMEDEGQEGVDSIS-----IPERYIVGCGGDVAEAERRWKATVEWRKENKVDEILETPQPHFHECRQVFPVFLHGRSRKGMPVLWERIGKVDLAKANELELPLSVLTPNYVFLNECVWRLILDKGENDNDDAQFITVEDVAGVRPWHLTPKVLSVLRALTGTMKAHYVERCHKSYIINAPRAFTALWRVVSAMLDARTRAKISIL-GTNYLEEMKEEIDVSQIPPEYGGSSGRAIDDSDDERKIQALVAR 1179
            L +D  E +E  + +E A + T +       DM  E     ++IS        R+I G  GDV +   R++AT++WRKEN +D IL TP P+F   ++ +P + HG++R G PV +ER GK+DL       L +  L  +Y+++ E +WR++       +D  + ITV DV G+  + L  +VL  ++  +    AHY ER    +IIN P  F  +WR+V  ++D  TR K+ +L G+  L+E++  ID+  IP ++GG  G A+ DS++E  + A V +
Sbjct:  431 LTVDSIEVIEADQDKEPAVSETASPVSDVTTDMTTETATPENAISGGPIAFSPRFIAGEKGDVEKGRARYEATLQWRKENDIDNILVTPHPNFEIIKKYYPQYFHGKTRDGHPVYYERPGKIDLPALKREGLSIDDLLRHYMYMTEYLWRVV-----EPDDSGRSITVLDVTGIGMYDLGGEVLDFIKRASAFTGAHYPERSAHIFIINIPGWFNMIWRMVKPLIDPVTREKVHMLKGSAILKELETLIDMENIPSDFGGG-GAALGDSEEEHALAAHVKK 705          
BLAST of mRNA_Ecto-sp13_S_contig1647.4663.1 vs. uniprot
Match: A0A0W8C751_PHYNI (Threonine ammonia-lyase n=7 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C751_PHYNI)

HSP 1 Score: 168 bits (425), Expect = 9.650e-42
Identity = 98/274 (35.77%), Postives = 153/274 (55.84%), Query Frame = 1
Query:  355 LALDGDEAVEVRKGEEAAAASTTTAPGSTADDMEDEGQEGVDS--ISIPERYIVGCGGDVAEAERRWKATVEWRKENKVDEILETPQPHFHECRQVFPVFLHGRSRKGMPVLWERIGKVDLAKANELELPLSVLTPNYVFLNECVWRLILDKGENDNDDAQFITVEDVAGVRPWHLTPKVLSVLRALTGTMKAHYVERCHKSYIINAPRAFTALWRVVSAMLDARTRAKISIL-GTNYLEEMKEEIDVSQIPPEYGGSSGRAIDDSDDERKIQA 1167
            L +D  E +E  + +E A  S T +P S  D + +     +    I+   R+I G  GD  +   R+ AT+EWRKEN +D IL TP P+F   ++ +P + HGR+R G+PV +ER GK+DL       L +  L  +Y+++ E +WR++       ND  + ITV DV G+  + L  +VL  ++  +    AHY ER    +IIN P  F  +WR+V  M+D  TR K+ +L G+  L+E++  ID+  IP ++GG  G A+ DS++E  + A
Sbjct:  417 LTVDRIEVIEADQDKEPAL-SETASPVSDIDGITESETNAISGGPIAFSPRFIAGEKGDEEKGRARYLATLEWRKENNIDNILVTPHPNFETIKKYYPQYFHGRTRDGLPVYYERPGKIDLPALKREGLSIDDLLRHYMYITEYLWRVV-----EPNDSGRSITVLDVTGIGMYDLGGEVLDFIKRASAFTGAHYPERSAHIFIINIPGWFNMIWRMVKPMIDPVTREKVHMLKGSAILKELETLIDLENIPSDFGGE-GVALGDSEEEHALAA 683          
BLAST of mRNA_Ecto-sp13_S_contig1647.4663.1 vs. uniprot
Match: A0A225WCR7_9STRA (SEC14 cytosolic factor n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WCR7_9STRA)

HSP 1 Score: 165 bits (417), Expect = 3.610e-41
Identity = 99/278 (35.61%), Postives = 152/278 (54.68%), Query Frame = 1
Query:  355 LALDGDEAVEVRKGEEAAAASTTTAPGSTADDMEDEGQEGVDSISIP----ERYIVGCGGDVAEAERRWKATVEWRKENKVDEILETPQPHFHECRQVFPVFLHGRSRKGMPVLWERIGKVDLAKANELELPLSVLTPNYVFLNECVWRLILDKGENDNDDAQFITVEDVAGVRPWHLTPKVLSVLRALTGTMKAHYVERCHKSYIINAPRAFTALWRVVSAMLDARTRAKISIL-GTNYLEEMKEEIDVSQIPPEYGGSSGRAIDDSDDERKIQALV 1173
            L +D  E +E  + +E A + T +       D   E  E + +IS P     R+I G  GD  +   R+ AT+EWRKEN +D IL TP P+F   +Q +P + HGR+R+G PV +ER GK+ L       L +  L  +Y+++ E +WR++       ND  + ITV DV G+  + L  +VL  ++  +    AHY ER    +IIN P  F  +WR+V  ++D  TR K+ +L G+  L+E++  ID   IP ++GG  G A+ DS++E  + A V
Sbjct:  433 LTVDMVEVIEADQDKEPAMSDTASPVSDLNADTSSETTE-IQAISGPIAFSPRFIAGEKGDAEKGHARFLATLEWRKENDIDNILVTPHPNFETIKQYYPQYFHGRTREGQPVYYERPGKIQLPALKREGLSIDDLLRHYMYITEYLWRVV-----EPNDSGRSITVLDVTGIGMYDLGGEVLDFIKRASAFTGAHYPERSAHIFIINIPGWFNMIWRMVKPLIDPVTREKVHMLKGSAILKELETLIDPENIPSDFGGE-GVALGDSEEEHALAAHV 703          
BLAST of mRNA_Ecto-sp13_S_contig1647.4663.1 vs. uniprot
Match: A0A3F2RWM8_9STRA (Threonine ammonia-lyase n=6 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RWM8_9STRA)

HSP 1 Score: 164 bits (414), Expect = 2.280e-40
Identity = 86/231 (37.23%), Postives = 134/231 (58.01%), Query Frame = 1
Query:  484 ISIPERYIVGCGGDVAEAERRWKATVEWRKENKVDEILETPQPHFHECRQVFPVFLHGRSRKGMPVLWERIGKVDLAKANELELPLSVLTPNYVFLNECVWRLILDKGENDNDDAQFITVEDVAGVRPWHLTPKVLSVLRALTGTMKAHYVERCHKSYIINAPRAFTALWRVVSAMLDARTRAKISIL-GTNYLEEMKEEIDVSQIPPEYGGSSGRAIDDSDDERKIQALV 1173
            I+   R++ G  GDV +  +R+  T+EWRKEN +D IL TP P+F   ++ +P + HGR+R G+PV +ER GK+DL       L +  L  +Y+++ E +WR++       ND  + ITV DV G+  + L  +VL  ++  +    AHY ER    +IIN P  F  +WR+V  ++D  TR K+ +L G+  L E++  ID+  IP ++GG  G A+ DS +E  + A V
Sbjct:  242 IAFSPRFVAGEKGDVEKGRQRYLHTLEWRKENNIDNILVTPHPNFEIIKKYYPQYFHGRTRDGLPVYYERPGKIDLPALKREGLSIDDLLRHYMYITEYLWRVV-----EPNDSGRSITVLDVTGIGMYDLGGEVLDFIKRASAFTGAHYPERSAHIFIINIPGWFNMIWRMVKPLIDPVTREKVHMLKGSAILRELETLIDLENIPSDFGGE-GVALGDSTEEHTLAAHV 466          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1647.4663.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH73_9PHAE7.720e-26592.36CRAL-TRIO domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5LAB2_9PHAE8.750e-4839.92CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A835Z260_9STRA1.790e-4333.08CRAL-TRIO domain-containing protein n=1 Tax=Tribon... [more]
W2QZT3_PHYPN6.240e-4335.25CRAL-TRIO domain-containing protein n=24 Tax=Phyto... [more]
A0A3M6VID9_9STRA6.440e-4339.06Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A7R9U9K9_9STRA9.550e-4337.50Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
G4YXA9_PHYSP7.460e-4234.16Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A0W8C751_PHYNI9.650e-4235.77Threonine ammonia-lyase n=7 Tax=Phytophthora TaxID... [more]
A0A225WCR7_9STRA3.610e-4135.61SEC14 cytosolic factor n=1 Tax=Phytophthora megaka... [more]
A0A3F2RWM8_9STRA2.280e-4037.23Threonine ammonia-lyase n=6 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1647contigEcto-sp13_S_contig1647:7241..10983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score590.1
Seed ortholog evalue8.1e-166
Seed eggNOG ortholog2880.D7FSV4
Model size1268
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-19_001910.1
Cds size1266
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1647.4663.1prot_Ecto-sp13_S_contig1647.4663.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1647 7241..10983 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462865.9533849-CDS-Ecto-sp13_S_contig1647:7240..77851681462865.9533849-CDS-Ecto-sp13_S_contig1647:7240..7785Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1647 7241..7785 +
1681462865.966113-CDS-Ecto-sp13_S_contig1647:7993..80771681462865.966113-CDS-Ecto-sp13_S_contig1647:7993..8077Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1647 7994..8077 +
1681462865.9749558-CDS-Ecto-sp13_S_contig1647:8314..85161681462865.9749558-CDS-Ecto-sp13_S_contig1647:8314..8516Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1647 8315..8516 +
1681462865.984107-CDS-Ecto-sp13_S_contig1647:8991..91011681462865.984107-CDS-Ecto-sp13_S_contig1647:8991..9101Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1647 8992..9101 +
1681462865.9943998-CDS-Ecto-sp13_S_contig1647:9573..96541681462865.9943998-CDS-Ecto-sp13_S_contig1647:9573..9654Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1647 9574..9654 +
1681462866.0034258-CDS-Ecto-sp13_S_contig1647:10085..102211681462866.0034258-CDS-Ecto-sp13_S_contig1647:10085..10221Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1647 10086..10221 +
1681462866.0123825-CDS-Ecto-sp13_S_contig1647:10875..109831681462866.0123825-CDS-Ecto-sp13_S_contig1647:10875..10983Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1647 10876..10983 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1647.4663.1

>prot_Ecto-sp13_S_contig1647.4663.1 ID=prot_Ecto-sp13_S_contig1647.4663.1|Name=mRNA_Ecto-sp13_S_contig1647.4663.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=422bp
APIPPLRVSYCRECSPRRMTTRSWQPLCYVLLLTLSSCQRASCTIESNPV
PSTAAATTAVLSDSAQDNHHRQQVLETDDIGGGDPDSCLGSQHQHQRQRG
ENMVVDGEEGTNKKPHSPLALDGDEAVEVRKGEEAAAASTTTAPGSTADD
MEDEGQEGVDSISIPERYIVGCGGDVAEAERRWKATVEWRKENKVDEILE
TPQPHFHECRQVFPVFLHGRSRKGMPVLWERIGKVDLAKANELELPLSVL
TPNYVFLNECVWRLILDKGENDNDDAQFITVEDVAGVRPWHLTPKVLSVL
RALTGTMKAHYVERCHKSYIINAPRAFTALWRVVSAMLDARTRAKISILG
TNYLEEMKEEIDVSQIPPEYGGSSGRAIDDSDDERKIQALVARLNSAAEG
QGIPPKAAGDDGKPTDLTGKS*
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mRNA from alignment at Ecto-sp13_S_contig1647:7241..10983+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1647.4663.1 ID=mRNA_Ecto-sp13_S_contig1647.4663.1|Name=mRNA_Ecto-sp13_S_contig1647.4663.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3743bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1647:7241..10983+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCACCGATACCGCCGCTCCGAGTTAGCTACTGCCGTGAGTGCTCTCCACG CAGAATGACAACAAGGTCCTGGCAGCCTCTCTGTTACGTACTTCTACTTA CGCTTTCCTCCTGTCAACGGGCGTCGTGCACGATAGAGAGTAACCCGGTA CCGTCGACCGCTGCTGCTACTACTGCTGTCCTCTCCGACTCGGCTCAGGA CAATCATCATCGACAGCAGGTTCTGGAGACCGACGATATCGGCGGAGGGG ATCCCGACAGCTGCCTAGGCTCTCAGCACCAGCACCAGCGACAGCGGGGG GAGAACATGGTGGTGGACGGGGAGGAAGGGACGAACAAAAAGCCTCACTC TCCACTTGCTTTGGACGGGGATGAGGCGGTGGAAGTCCGCAAGGGTGAAG AAGCTGCAGCGGCTTCGACGACGACAGCTCCCGGGTCAACCGCCGATGAT ATGGAGGACGAGGGGCAAGAGGGGGTAGACAGCATCAGTATCCCGGAGAG ATACATCGTAGGGTGCGGAGGAGATGTAGCGGAAGCTGAAAGACGGTGAG CCTTAAGGAGTACGTGCTTATTTGCAGAACTCTCTTCGCAATTCTAAGTC TTTTTTCGGAGTTGTCGGTCCGGTGCACAAATATCGAGAGAACCGGTTCT CTCATACACGGATACACGGCTTACCATGGCCTTCCCACGCACTCACAGCA GTCACAAGCTAGACCGCCACCCGTTCCTTCCTCCCTACCTGCCTCTTCCG CAGATGGAAGGCGACTGTCGAGTGGAGAAAAGAGAACAAGGTGGACGAGA TTTTGGAGACACCGCAGCCTCACTTTCACGAATGCAGGTGATGAACCTGC ATGAGAGTACGGCGGTTCAGGAAAGGGGAGCTTTTTGCCGATTCACTAAA TAGAGAGAGAGGGAGAGAGGGAGAGAGGGAGAGAGAGAGAGAGAGAGAGA GAGAGAGGAAACACGGTGCCTTGGTGCCCCGTAGATTGACAAAGTGCAGA CACTGTGACTTAATCAAAACAAGAAGACCATTTCTTTGTCCCACGACTCC TGCTACTGCTCCTGCTGTTCGCAGGCAAGTGTTCCCCGTGTTCTTGCACG GGCGGAGCCGGAAGGGGATGCCGGTGCTGTGGGAGCGCATCGGTAAGGTT GATCTGGCGAAGGCGAACGAGCTGGAGCTGCCCCTGTCGGTGCTGACGCC GAACTATGTCTTCCTCAACGAGTGCGTGTGGAGATTAATCCTGGACAAGG GTGAAAACGACAACGATGACGCCCAGGTGAGGATGGATCACATGCATGTG CAGCACGAGAGCATCGATGGTGGCGTAGTAGGGCAGGTTTCGTGTGGTTC ACAAGTCCTCTGTGTGGTTCACTTTCGCAGAGCCCTCAGTGGCTTCGATT GCGCCCGCGTTCCGCCCCCACAACCCCTCCCTACCTCCTGTGCACCCTGC CGCCATACGTGCGGGCCGTTGAAATGGTCATTGTTCCTTCCACCTCTCGT TCAAGTCGGCGTTGATTTGCTGACCCGGGCTCACTACGTAAGTGCTTGTG ATTGTTGATCCTGGCCTGTCGGCGTCGTTCATCGCTCACATCGCCGAACG CAGCGCTACTCCTACCGCCCTTGCCCGCAGTCTCACGCGCCACGTTTCTC TCCGCCTTCCTTGCGCGTGCTGTTGCCGTCGGGCTGCGTCGGTTTCTCGC ATCAACCCTCCGTGGTGGCGGCCCGTGCCGGAAAAAACGTAAAAAATGCA GTTCATCACGGTCGAGGACGTCGCCGGAGTCCGGCCGTGGCACCTCACCC CCAAGGTTCTTTCGGTCCTGCGCGCGCTAACCGGGACCATGAAGGCGCAC TACGTCGAGAGGTATTGGTTCCGGAATGATTTAGGGCATGTTATGTGGTA CAGGGGGGGGTCCCCCGAGTATGGCGGTGGTAGGGAAGCCTTTCGTGGGC CGCCTTATATGGGGCAGCCGCCTTATTCAGTCTATGTCAGCCAATCCCAC CCGCCTAGTCTATAGGGCGAGCGCCTTGCTCGGGGACCCTCACTGCTGTG CTCAGCTCAAACCACTTCTCATCTGTAGTGTCCACGTTGTCGAAGGTTTG TGGGCTCACGTTCAGCTACTTAACCTCAAACAACGGAACTATGTGACTCG GGCGAGAGGAGGCGCCCTTCCCTTTGTAGCCCAAGCGGCATTTTCATGGA GCCTACAGTAGTGTGGTCGAGTCCTGCCCTCCGTCCCTCACCGACCATTG GTCCGTCAATGATTTCCATCGAGCCATCCCGACCCCCGTTGCTTGCGTGC CTTTCATCTTCGACTTGCTTTTTCAACACCCAGGTGTCACAAATCGTACA TTATCAACGCCCCGCGAGCGTTCACGGCTCTGTGGCGTGTAGTCTCGGCC ATGCTAGACGCCAGGTGAGCACCGCGATTTTTCCGCGGCACTGCTTTCGT GTCGTGACCGGGAGGGATACGTGCGCTTGCGATTCTGCTGTAGTTTTGTC ATCTCTGTCGTATTCGTTGTCATCATCGTCGACATTATCATCACCGCGCG GGTTTGTTGTGCGGAATTGTCGACATCCCCGCGGCAGCTGATGCCGTGTT TCGTCGTTGCTGTCGTTCTAGGTGGTAACGGTGTAGTTGTATTCGTCGTC GTCGTCGTCATCATCACCGTCGTGGTTGCATTTTTGAGGAGTGTTAGACC TCCCCGCGGCAGTTGATACCACTGGTTATTTCGTTAATTCTTTGTCTTCC CGCGCTGCTCTCGGGACTGTTCATGCTGACTTTCTGCTGATGCTCGTTTG TGCACACGCCCTTGTTTTTCCGGAATACGCGCAACCGTGAAACAGAACTC GTGCCAAGATTTCTATTTTGGGGACGAACTACCTAGAGGAGATGAAGGAG GAGATCGACGTTTCCCAGATCCCGCCAGAGTACGGCGGGAGCAGCGGCAG GGCTATCGACGACTCGGACGATGAGAGGAAGGTCAGTCACTAGTCAGGAA TTGCGGTGGGACTTTCATCGTGCAAAATAGCTCTGGATGAGGGTCAACCT TTTTGATGTTTGCTCTTGTTTGGGATGAGAATCGTATGCGAACGTCTGGA GGACAAAGGTGGTTTGATTCGCTTCAACGATGGCGGCAAAGTCGAGAGAG ACTGACACTGCCACAAGTGACTATTTAAAAAAAAACAGGATCAACGCATC ACTTGCTTCATCTTGGGAATGGGCACGCAGTGAGTAGCGGTGTCACGGCC GCCTGGATGCTGAACAGCACCTGTCGAAGACGACAAGGCCGTGACAACGA GTTAGTGCGTATTCCCCCCCACCCACACCGTTCGTTCTGAAAGCTGTCTA CATAGTCTGCTATGCAGGGATGCCAGGGTGTACGCCGCCGCACATGTGCT GCTAGGGTCGTCTTGGCGTGAACGCGGGGATGACCTTAAAGTCAAGGGCA TGCCGCATATGGGCTTTTGGATCGCCTCGTCCAGCAGTGGGAGCGCGGCT CAGTCTCGAACGAGTTGCGCAGTATATCGTCAAATAACAGCGGCAAGCAA CTAAAGAGCCCCCCCCCCCCCTCCCCCGGCGTTTCCGTTCCATGTCGCCC CCCGCCCAAAAATATATATCCCCCATCATGAGCAGATCCAAGCACTAGTA GCTCGGCTCAACTCGGCGGCGGAAGGACAGGGAATTCCACCGAAAGCTGC CGGAGATGATGGGAAACCCACAGACCTCACCGGAAAGAGTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1647:7241..10983+

>mRNA_Ecto-sp13_S_contig1647.4663.1 ID=mRNA_Ecto-sp13_S_contig1647.4663.1|Name=mRNA_Ecto-sp13_S_contig1647.4663.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1266bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1647:7241..10983+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCACCGATACCGCCGCTCCGAGTTAGCTACTGCCGTGAGTGCTCTCCACG
CAGAATGACAACAAGGTCCTGGCAGCCTCTCTGTTACGTACTTCTACTTA
CGCTTTCCTCCTGTCAACGGGCGTCGTGCACGATAGAGAGTAACCCGGTA
CCGTCGACCGCTGCTGCTACTACTGCTGTCCTCTCCGACTCGGCTCAGGA
CAATCATCATCGACAGCAGGTTCTGGAGACCGACGATATCGGCGGAGGGG
ATCCCGACAGCTGCCTAGGCTCTCAGCACCAGCACCAGCGACAGCGGGGG
GAGAACATGGTGGTGGACGGGGAGGAAGGGACGAACAAAAAGCCTCACTC
TCCACTTGCTTTGGACGGGGATGAGGCGGTGGAAGTCCGCAAGGGTGAAG
AAGCTGCAGCGGCTTCGACGACGACAGCTCCCGGGTCAACCGCCGATGAT
ATGGAGGACGAGGGGCAAGAGGGGGTAGACAGCATCAGTATCCCGGAGAG
ATACATCGTAGGGTGCGGAGGAGATGTAGCGGAAGCTGAAAGACGATGGA
AGGCGACTGTCGAGTGGAGAAAAGAGAACAAGGTGGACGAGATTTTGGAG
ACACCGCAGCCTCACTTTCACGAATGCAGGCAAGTGTTCCCCGTGTTCTT
GCACGGGCGGAGCCGGAAGGGGATGCCGGTGCTGTGGGAGCGCATCGGTA
AGGTTGATCTGGCGAAGGCGAACGAGCTGGAGCTGCCCCTGTCGGTGCTG
ACGCCGAACTATGTCTTCCTCAACGAGTGCGTGTGGAGATTAATCCTGGA
CAAGGGTGAAAACGACAACGATGACGCCCAGTTCATCACGGTCGAGGACG
TCGCCGGAGTCCGGCCGTGGCACCTCACCCCCAAGGTTCTTTCGGTCCTG
CGCGCGCTAACCGGGACCATGAAGGCGCACTACGTCGAGAGGTGTCACAA
ATCGTACATTATCAACGCCCCGCGAGCGTTCACGGCTCTGTGGCGTGTAG
TCTCGGCCATGCTAGACGCCAGAACTCGTGCCAAGATTTCTATTTTGGGG
ACGAACTACCTAGAGGAGATGAAGGAGGAGATCGACGTTTCCCAGATCCC
GCCAGAGTACGGCGGGAGCAGCGGCAGGGCTATCGACGACTCGGACGATG
AGAGGAAGATCCAAGCACTAGTAGCTCGGCTCAACTCGGCGGCGGAAGGA
CAGGGAATTCCACCGAAAGCTGCCGGAGATGATGGGAAACCCACAGACCT
CACCGGAAAGAGTTAG
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