mRNA_Ecto-sp13_S_contig16464.4660.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16464.4660.1
Unique NamemRNA_Ecto-sp13_S_contig16464.4660.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16464.4660.1 vs. uniprot
Match: D8LQR8_ECTSI (NapH1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQR8_ECTSI)

HSP 1 Score: 304 bits (778), Expect = 2.480e-104
Identity = 142/150 (94.67%), Postives = 145/150 (96.67%), Query Frame = 1
Query:    7 RHLLGDEMVEAYAGPDQGVQNVNASQWEPFIRTMPHSEYPSASACLCEGFARQVENFLGNDTIEPALQFPPGPPPAGMNASPEFASWSEISQVCGDSRVWGGMHFAGAVPAGAELCGGEDMAKSIHDSFERLKCGDESAAVFKSDVGELM 456
            RHLLGDE+VEAYAGPDQGVQNV AS+WEPFIRTMPHSEYPSASACLCEGFARQVENFLGND IEPALQFPPGPPPAG+NAS EFASWSEISQVCGDSRVW GMHFAGAVPAGAELCGGEDMAKSIHDSFERLK GDESAAVFKSDVGELM
Sbjct:    3 RHLLGDELVEAYAGPDQGVQNVKASEWEPFIRTMPHSEYPSASACLCEGFARQVENFLGNDKIEPALQFPPGPPPAGLNASLEFASWSEISQVCGDSRVWSGMHFAGAVPAGAELCGGEDMAKSIHDSFERLKAGDESAAVFKSDVGELM 152          
BLAST of mRNA_Ecto-sp13_S_contig16464.4660.1 vs. uniprot
Match: D8LSP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSP1_ECTSI)

HSP 1 Score: 303 bits (776), Expect = 1.530e-100
Identity = 140/154 (90.91%), Postives = 148/154 (96.10%), Query Frame = 1
Query:    7 RHLLGDEMVEAYAGPDQGVQNVNASQWEPFIRTMPHSEYPSASACLCEGFARQVENFLGNDTIEPALQFPPGPPPAGMNASPEFASWSEISQVCGDSRVWGGMHFAGAVPAGAELCGGEDMAKSIHDSFERLKCGDESAAVFKSDVGELMVRPR 468
            RHLLGDE+VEAYAGPDQGVQ + AS+WEPFIRTMPHSEYPSASACLCEGFARQVENFLG+D IEPAL+FPPGPPPAG+NAS EFASWSEISQVCGDSR+WGGMHFAGAV AGAELCGGEDMAKSIHDSFERLK GDESAA+FKSDVGELMVRPR
Sbjct:  249 RHLLGDELVEAYAGPDQGVQTMKASEWEPFIRTMPHSEYPSASACLCEGFARQVENFLGDDKIEPALEFPPGPPPAGLNASLEFASWSEISQVCGDSRIWGGMHFAGAVLAGAELCGGEDMAKSIHDSFERLKAGDESAAIFKSDVGELMVRPR 402          
BLAST of mRNA_Ecto-sp13_S_contig16464.4660.1 vs. uniprot
Match: A0A6H5K7C3_9PHAE (CPO-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7C3_9PHAE)

HSP 1 Score: 276 bits (707), Expect = 8.150e-90
Identity = 126/155 (81.29%), Postives = 138/155 (89.03%), Query Frame = 1
Query:    7 RHLLGDEMVEAYAGPDQGVQNVNASQWEPFIRTMPHSEYPSASACLCEGFARQVENFLGNDTIEPALQFPPGPPPAGMNASP-EFASWSEISQVCGDSRVWGGMHFAGAVPAGAELCGGEDMAKSIHDSFERLKCGDESAAVFKSDVGELMVRPR 468
            +H LGD +VEAYAGP QGVQ + AS+WEPFIRTMPHSEYPS S+CLCE FA+Q+ENFLG+DTIEPALQFPPGPPP G +A P EFASWSEISQVCGDSR WGGMHFAGAVPAGAELCG  DMAKSIHDS ERLK GDESAA+F +D+GELMVRPR
Sbjct:  270 KHKLGDALVEAYAGPGQGVQTIKASEWEPFIRTMPHSEYPSGSSCLCEAFAKQIENFLGDDTIEPALQFPPGPPPPGFDAPPLEFASWSEISQVCGDSRAWGGMHFAGAVPAGAELCGSTDMAKSIHDSLERLKVGDESAAIFTTDIGELMVRPR 424          
BLAST of mRNA_Ecto-sp13_S_contig16464.4660.1 vs. uniprot
Match: A0A6H5JTZ2_9PHAE (CPO-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTZ2_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 5.250e-63
Identity = 96/155 (61.94%), Postives = 120/155 (77.42%), Query Frame = 1
Query:    1 ICRHLLGDEMVEAYAGPDQGVQNVNASQWEPFIRTMPHSEYPSASACLCEGFARQVENFLGNDTIEPALQFPPGPPPAGMNASPEFASWSEISQVCGDSRVWGGMHFAGAVPAGAELCGGEDMAKSIHDSFERLKCGDESAAVFKSDVGELMVRP 465
            + R+ LGDE+V+AYAGPD G+Q + AS+WEP+IRTMPHSEYPS S+C+CEGFA  +  + GND I+P + FPP   P       EF+SW+EISQ+CGDSRVW G+HF  AVPAGAELCGG+++A SI  S + L  GDESAAVFK DVGEL++RP
Sbjct:  332 VIRNELGDELVDAYAGPDIGIQTIKASEWEPYIRTMPHSEYPSGSSCICEGFASALRLWAGNDIIDPPIGFPP---PEFGGPILEFSSWTEISQMCGDSRVWAGLHFEEAVPAGAELCGGDEIAVSIAASIDALTAGDESAAVFKRDVGELVLRP 483          
BLAST of mRNA_Ecto-sp13_S_contig16464.4660.1 vs. uniprot
Match: A0A6H5L4I1_9PHAE (CPO-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L4I1_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.400e-39
Identity = 81/163 (49.69%), Postives = 102/163 (62.58%), Query Frame = 1
Query:    1 ICRHLLGDEMVEAYAGPDQGVQNVNASQW-EPFIRTMPHSEYPSASACLCEGFARQVEN-------FLGNDTIEPALQFPPGPPPAGMNASPEFASWSEISQVCGDSRVWGGMHFAGAVPAGAELCGGEDMAKSIHDSFERLKCGDESAAVFKSDVGELMVRP 465
            + R+ +GDE+VEAYAGPD GVQN+ AS+W +  +R    ++         E F  Q E        + G DTI P L+ P   P         FASWSEIS++CGDSRVWGG+HF  +VPAG ELCGG++MA SI  S + L  GDES AVFK D+GELM+RP
Sbjct:  381 VVRNEIGDEIVEAYAGPDSGVQNMTASEWVDRSVRIFQGTDTERKQ----ERFHMQQEYHKKTGRVWAGTDTINPPLEQPEEDPLVS------FASWSEISEMCGDSRVWGGLHFEESVPAGVELCGGDEMAISIAASIDGLTAGDESVAVFKRDIGELMLRP 533          
BLAST of mRNA_Ecto-sp13_S_contig16464.4660.1 vs. uniprot
Match: D8LLS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLS4_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 1.590e-36
Identity = 77/154 (50.00%), Postives = 85/154 (55.19%), Query Frame = 1
Query:    7 RHLLGDEMVEAYAGPDQGVQNVNASQWEPFIRTMPHSEYPSASACLCEGFARQVENFLGNDTIEPALQFPPGPPPAGMNASPEFASWSEISQVCGDSRVWGGMHFAGAVPAGAELCGGEDMAKSIHDSFERLKCGDESAAVFKSDVGELMVRPR 468
            +H LGDE+VEAYAGP +GVQ + AS+WE F+RT P SEYPSASACLCEG                                                          AVPAGAELCGG DMA SIHDS ERLK GDESAA+FK+DVGELMVRPR
Sbjct:  393 KHKLGDELVEAYAGPGEGVQTMKASEWESFMRTNPTSEYPSASACLCEG----------------------------------------------------------AVPAGAELCGGMDMAMSIHDSLERLKAGDESAAIFKTDVGELMVRPR 488          
BLAST of mRNA_Ecto-sp13_S_contig16464.4660.1 vs. uniprot
Match: R7QSC8_CHOCR (PAP2/haloperoxidase-like protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSC8_CHOCR)

HSP 1 Score: 108 bits (270), Expect = 1.210e-24
Identity = 58/146 (39.73%), Postives = 79/146 (54.11%), Query Frame = 1
Query:   16 LGDEMVEAYAGPDQGVQNVNASQWEPFIRTMPHSEYPSASACLCEGFARQVENFLGNDTI----EPA----------LQFPPGPPPAGMNASPEFASWSEISQVCGDSRVWGGMHFAGAVPAGAELCGGEDMAKSIHDSFERLKCG 411
            L  + + AYAG +QG + + A  WEP+IRTMPHSEYPS SAC C  FA  ++ F G+D      +P+              PG P A +     + SWS +++ CG SR+ GGMHF  +VPAGA LC      + + D  + L  G
Sbjct:  363 LAGQKIFAYAGANQGKKQMRAEDWEPYIRTMPHSEYPSGSACFCAVFAESMKLFFGSDNFLANGKPSPLSLKVAAGQSLVEPGRPSADVTLV--YNSWSAVAEDCGKSRLTGGMHFTASVPAGAALCA--PFGRRMFDVIKALSSG 504          
BLAST of mRNA_Ecto-sp13_S_contig16464.4660.1 vs. uniprot
Match: A0A7S3Z7G8_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z7G8_9EUKA)

HSP 1 Score: 106 bits (265), Expect = 6.580e-24
Identity = 62/167 (37.13%), Postives = 88/167 (52.69%), Query Frame = 1
Query:   16 LGDEMVEAYAGPD---------QGVQNVNASQWEPFIRTMPHSEYPSASACLCEGFARQVENFLGNDTIEPALQFPPGPPPAGMNASPE----------FASWSEISQVCGDSRVWGGMHFAGAVPAGAELCGGEDMAKSIHDSFERLKCGDESAAVFKSDVGELMV 459
            +G      YAGP           G + +  +++EP IRTMPHSEYPSASAC+C+ F   + + LG+D+I P      G    G   SP           F  WSE++ +CG SR++GGMHF  AVPAGA LC  +++ KS   +F +L+ G  +  +   D   + V
Sbjct:  363 IGRGTAFTYAGPYGSNFGGPFVDGPEVIKQTEFEPVIRTMPHSEYPSASACVCQAFFDALADKLGSDSITPPATL--GIQAGGTRNSPGLRPVEDVNLIFNLWSEMNTLCGQSRLFGGMHFTKAVPAGANLC--KNIGKSASTAFAQLESGALTEGLLDLDETHIRV 525          
BLAST of mRNA_Ecto-sp13_S_contig16464.4660.1 vs. uniprot
Match: A0A7S1ZRM1_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZRM1_TRICV)

HSP 1 Score: 105 bits (262), Expect = 1.520e-23
Identity = 54/149 (36.24%), Postives = 82/149 (55.03%), Query Frame = 1
Query:   16 LGDEMVEAYAGPDQGVQNVNASQWEPFIRTMPHSEYPSASACLCEGFARQVENFL----GNDTIEPALQFPPGPPPAGMNASP------EFASWSEISQVCGDSRVWGGMHFAGAVPAGAELCGGEDMAKSIHDSFERLKCGDESAAVF 432
            +GD+ + +Y GP  G  +++A  W P+IRTMPH+EYPS SACLC   A  V+ ++    GN+T     +F  G         P       FA+ +E+  +CG SR+WGGMHF  +V    +LC G   AK+ +D   +L   ++  ++F
Sbjct:  372 MGDKTINSYRGPFMGTGDMSARDWHPYIRTMPHAEYPSGSACLCTAVAEYVDAYMADQHGNNTYPTIWEFAAGSSETEPGVVPAKALTLSFATMTELRDMCGKSRLWGGMHFTKSVQDSYQLCKGLG-AKAYNDWARQLLPNNDLDSLF 519          
BLAST of mRNA_Ecto-sp13_S_contig16464.4660.1 vs. uniprot
Match: A0A8J5X3W0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X3W0_DIALT)

HSP 1 Score: 103 bits (257), Expect = 7.730e-23
Identity = 54/127 (42.52%), Postives = 67/127 (52.76%), Query Frame = 1
Query:   22 DEMVEAYAGPDQGVQNVNASQWEPFIRTMPHSEYPSASACLCEGFARQVENFLGNDTIEPALQFPPGP---PPAGMNASPE------------FASWSEISQVCGDSRVWGGMHFAGAVPAGAELCG 357
            DE V +Y GP +   ++  S WE +IR MPH+EYPS S+CLC  F   +  F G     P      GP   P A  ++S E            FASW E+  VCG+SR+ GGMHF  AVP G  LCG
Sbjct:  372 DETVMSYRGPSEEPGDIKGSDWEAYIRIMPHAEYPSGSSCLCRAFVEALVTFEGITAAAPVPPMGAGPLVQPFAAGSSSVEPGKTPDTDIVLTFASWDEVVHVCGESRLDGGMHFTAAVPDGERLCG 498          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16464.4660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQR8_ECTSI2.480e-10494.67NapH1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 Re... [more]
D8LSP1_ECTSI1.530e-10090.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7C3_9PHAE8.150e-9081.29CPO-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A6H5JTZ2_9PHAE5.250e-6361.94CPO-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
A0A6H5L4I1_9PHAE1.400e-3949.69CPO-like protein n=2 Tax=Ectocarpus TaxID=2879 Rep... [more]
D8LLS4_ECTSI1.590e-3650.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
R7QSC8_CHOCR1.210e-2439.73PAP2/haloperoxidase-like protein n=1 Tax=Chondrus ... [more]
A0A7S3Z7G8_9EUKA6.580e-2437.13Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A7S1ZRM1_TRICV1.520e-2336.24Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A8J5X3W0_DIALT7.730e-2342.52Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16464contigEcto-sp13_S_contig16464:2043..3254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score284.6
Seed ortholog evalue2.6e-74
Seed eggNOG ortholog2880.D8LQR8
Model size471
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2DGTT@1,2S5V4@2759
Cds size444
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462865.719663-UTR-Ecto-sp13_S_contig16464:2042..20691681462865.719663-UTR-Ecto-sp13_S_contig16464:2042..2069Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16464 2043..2069 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462865.7311692-CDS-Ecto-sp13_S_contig16464:2069..21921681462865.7311692-CDS-Ecto-sp13_S_contig16464:2069..2192Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16464 2070..2192 +
1681462865.7398202-CDS-Ecto-sp13_S_contig16464:2622..27961681462865.7398202-CDS-Ecto-sp13_S_contig16464:2622..2796Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16464 2623..2796 +
1681462865.7543964-CDS-Ecto-sp13_S_contig16464:3107..32541681462865.7543964-CDS-Ecto-sp13_S_contig16464:3107..3254Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16464 3108..3254 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16464.4660.1prot_Ecto-sp13_S_contig16464.4660.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16464 2070..3254 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16464.4660.1

>prot_Ecto-sp13_S_contig16464.4660.1 ID=prot_Ecto-sp13_S_contig16464.4660.1|Name=mRNA_Ecto-sp13_S_contig16464.4660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp
MVEAYAGPDQGVQNVNASQWEPFIRTMPHSEYPSASACLCEGFARQVENF
LGNDTIEPALQFPPGPPPAGMNASPEFASWSEISQVCGDSRVWGGMHFAG
AVPAGAELCGGEDMAKSIHDSFERLKCGDESAAVFKSDVGELMVRPR*
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mRNA from alignment at Ecto-sp13_S_contig16464:2043..3254+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16464.4660.1 ID=mRNA_Ecto-sp13_S_contig16464.4660.1|Name=mRNA_Ecto-sp13_S_contig16464.4660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1212bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16464:2043..3254+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCTGTAGGCACCTGCTCGGCGATGAAATGGTGGAGGCCTACGCCGGACC GGATCAGGGCGTCCAAAACGTAAACGCATCACAATGGGAGCCGTTCATCA GGACCATGCCTCACTCTGAGTACCCCTCGGCCTCTGCGTGCCTTTGCGAG GTACGAGGTTGTATCTGCTAGAGCTCGTGACCGTTTCGTTTCGTTTGAAG TATGTGTCAATATAAGTGCTTACGAGATAGGCACATGTCGTCCTTTGGGT ACTGACGGGAACATAGCGCACTTGTAGCGGTCATGATTTGAAACGCTTCT GCCCGGAGGGTGCCAAGCGATTACAGTAGTCGGAATGCTCCACCAAATGG AAGCTGGACTCACGGCTTCATTTTCCCATAAGAAGACTACACGATTTTTG CGCCATGCACGTTTTTTTGCAACCTTCAGATACTTGTAACGGATATTTCA TCGCATCCCTCAGAACGTTGCGACAAAAAACGATGAATTGTAACATACAC CAATCGAACTAAATGTTATTCTCTCAAGTCTTCCTTCTTCCGCCCTCCTG GGCCGTCCCCTGCCTCCCGCGGAACGCTAGGGGTTTGCACGGCAAGTCGA GAACTTTCTTGGTAACGACACGATCGAGCCTGCTCTTCAGTTCCCCCCGG GTCCTCCACCCGCCGGCATGAACGCATCCCCGGAATTCGCTTCCTGGTCC GAGATTTCCCAAGTCTGTGGCGATAGTCGCGTCTGGGGTGGGATGCACTT TGCGGTAAGTGCGCATCATTGTTTGGATCATGCACGTTGTTCACTCAAGC AGACACGCCCTGATGGGGTCGTCACTCACTGGACGATCCAATATGTGCCG ACCCTACGCTTTGCGGTGAGTCTCCCACTCACACCCGCCCAGCTCCGTGT GATGCGATCTCTAGTCGAGATTTTTGCTTTCATTTCCTGAAAGCATCTTT CGCAGTGCACTCACTATGAAGTGACAGGTGCGCATCGCCTTCACCAAGCC GTACAGCGTTCTTATTGGGACTGGTTTTGAAGCCAACCATTTCACTTGGT GTTGCCCTGCGTCAGGGAGCCGTTCCAGCGGGAGCCGAGCTGTGCGGAGG CGAAGACATGGCCAAGTCGATCCACGACTCCTTTGAGCGTCTCAAATGCG GGGACGAGAGCGCCGCCGTCTTCAAGAGCGATGTTGGCGAGCTGATGGTG CGGCCCCGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16464:2043..3254+

>mRNA_Ecto-sp13_S_contig16464.4660.1 ID=mRNA_Ecto-sp13_S_contig16464.4660.1|Name=mRNA_Ecto-sp13_S_contig16464.4660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16464:2043..3254+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGAGGCCTACGCCGGACCGGATCAGGGCGTCCAAAACGTAAACGC
ATCACAATGGGAGCCGTTCATCAGGACCATGCCTCACTCTGAGTACCCCT
CGGCCTCTGCGTGCCTTTGCGAGGGGTTTGCACGGCAAGTCGAGAACTTT
CTTGGTAACGACACGATCGAGCCTGCTCTTCAGTTCCCCCCGGGTCCTCC
ACCCGCCGGCATGAACGCATCCCCGGAATTCGCTTCCTGGTCCGAGATTT
CCCAAGTCTGTGGCGATAGTCGCGTCTGGGGTGGGATGCACTTTGCGGGA
GCCGTTCCAGCGGGAGCCGAGCTGTGCGGAGGCGAAGACATGGCCAAGTC
GATCCACGACTCCTTTGAGCGTCTCAAATGCGGGGACGAGAGCGCCGCCG
TCTTCAAGAGCGATGTTGGCGAGCTGATGGTGCGGCCCCGCTAG
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