mRNA_Ecto-sp13_S_contig16460.4658.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16460.4658.1
Unique NamemRNA_Ecto-sp13_S_contig16460.4658.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16460.4658.1 vs. uniprot
Match: D8LC66_ECTSI (WD repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC66_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 6.670e-44
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 1
Query:   10 RDVEAIALANSNMGDYKLKSSPDYEVPEEMQLNVVKKQREMVLLEDSLHTMRSRFNSRFLALRTIKREILSTVSADNRRLREIDAELG 273
            RDVEAIALANSNMGDYKLKSSPDYEVPEEMQLNVVKKQREMVLLEDSLH MRSRFNSRFLALRTIK+EILSTVSADNRRLREIDAELG
Sbjct: 1300 RDVEAIALANSNMGDYKLKSSPDYEVPEEMQLNVVKKQREMVLLEDSLHAMRSRFNSRFLALRTIKQEILSTVSADNRRLREIDAELG 1387          
BLAST of mRNA_Ecto-sp13_S_contig16460.4658.1 vs. uniprot
Match: A0A6H5KI67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI67_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 1.140e-43
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 1
Query:   10 RDVEAIALANSNMGDYKLKSSPDYEVPEEMQLNVVKKQREMVLLEDSLHTMRSRFNSRFLALRTIKREILSTVSADNRRLREIDAELG 273
            RDVEAIALANSNMGDYKLKSS DYEVPEEMQLNVVKKQREMVLLEDSLHTMRSRFNSRFLALRTIKREILSTVSADNRRLR+IDAELG
Sbjct:   87 RDVEAIALANSNMGDYKLKSSTDYEVPEEMQLNVVKKQREMVLLEDSLHTMRSRFNSRFLALRTIKREILSTVSADNRRLRQIDAELG 174          
BLAST of mRNA_Ecto-sp13_S_contig16460.4658.1 vs. uniprot
Match: A0A482T059_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T059_9ARCH)

HSP 1 Score: 103 bits (256), Expect = 1.160e-23
Identity = 53/87 (60.92%), Postives = 69/87 (79.31%), Query Frame = 1
Query:   10 RDVEAIALANSNMGDYKLKSSPDYEVPEEMQLNVVKKQREMVLLEDSLHTMRSRFNSRFLALRTIKREILSTVSADNRRLREIDAEL 270
            RD++AI  A   +GDYKLK S DYEVPE+ ++NVVKK R+M +LE+S+ TMR +FN RFLALR +KREI+ +V  DN+R+REID EL
Sbjct: 1028 RDLDAIRHAEKTIGDYKLKCSDDYEVPEDQRINVVKKIRQMAMLEESMLTMRLQFNDRFLALRQLKREIIFSVRRDNQRIREIDGEL 1114          
BLAST of mRNA_Ecto-sp13_S_contig16460.4658.1 vs. uniprot
Match: A0A7S0Z0C5_9CRYP (Hypothetical protein (Fragment) n=4 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0Z0C5_9CRYP)

HSP 1 Score: 96.3 bits (238), Expect = 1.660e-23
Identity = 49/87 (56.32%), Postives = 67/87 (77.01%), Query Frame = 1
Query:   13 DVEAIALANSNMGDYKLKSSPDYEVPEEMQLNVVKKQREMVLLEDSLHTMRSRFNSRFLALRTIKREILSTVSADNRRLREIDAELG 273
            DV AI  AN+ MGDYKLK+ PDY VPE +++N  KK+R+MVLLE+S++T++  FN RFLALR +K  I + + ADN R++EI+ ELG
Sbjct:   57 DVAAIEEANTLMGDYKLKTDPDYVVPEHLRINADKKRRQMVLLEESIYTIKMAFNDRFLALRELKSRIRANIRADNLRIQEINQELG 143          
BLAST of mRNA_Ecto-sp13_S_contig16460.4658.1 vs. uniprot
Match: A0A7S1G790_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G790_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.770e-23
Identity = 50/86 (58.14%), Postives = 67/86 (77.91%), Query Frame = 1
Query:   13 DVEAIALANSNMGDYKLKSSPDYEVPEEMQLNVVKKQREMVLLEDSLHTMRSRFNSRFLALRTIKREILSTVSADNRRLREIDAEL 270
            DVEA+  A  NMGDYKLKS+PDY+VPE  +++ VKK+R+MVLLE+S+ +++S FN R LALR +KR I+  V ADN RL+ I+ EL
Sbjct:   40 DVEAVTHARENMGDYKLKSAPDYKVPEAKRVDNVKKRRQMVLLEESVFSIKSDFNKRLLALRDLKRAIVENVRADNARLKAINEEL 125          
BLAST of mRNA_Ecto-sp13_S_contig16460.4658.1 vs. uniprot
Match: A0A7S0DYL1_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DYL1_9CRYP)

HSP 1 Score: 97.4 bits (241), Expect = 6.390e-22
Identity = 47/91 (51.65%), Postives = 69/91 (75.82%), Query Frame = 1
Query:    1 ECSRDVEAIALANSNMGDYKLKSSPDYEVPEEMQLNVVKKQREMVLLEDSLHTMRSRFNSRFLALRTIKREILSTVSADNRRLREIDAELG 273
            E  +DV AI  A  +MGDYKLK+  DY VPE ++++  KK+R+M+LLE+S+H+++  FN R LALR +K++I+  + ADN+R+REID ELG
Sbjct:   83 EDPKDVSAIQHAQKHMGDYKLKTEEDYVVPEHLRIDAEKKRRQMILLEESIHSIKMGFNDRLLALRDLKKKIIGNIQADNQRIREIDEELG 173          
BLAST of mRNA_Ecto-sp13_S_contig16460.4658.1 vs. uniprot
Match: A0A7S2C7U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C7U9_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 1.810e-20
Identity = 43/79 (54.43%), Postives = 63/79 (79.75%), Query Frame = 1
Query:   13 DVEAIALANSNMGDYKLKSSPDYEVPEEMQLNVVKKQREMVLLEDSLHTMRSRFNSRFLALRTIKREILSTVSADNRRL 249
            D+ AIA A +NMGDYKLK +PDYEVPE+  +N  KK+R+MVLLE+++  +++RFN RFLALR +KR+I  ++ + N+R+
Sbjct:   83 DLAAIAYAENNMGDYKLKMAPDYEVPEDQAVNSEKKRRQMVLLEENMLNIKTRFNKRFLALRDLKRQIALSIISSNKRV 161          
BLAST of mRNA_Ecto-sp13_S_contig16460.4658.1 vs. uniprot
Match: A0A7S1X257_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X257_9CHLO)

HSP 1 Score: 89.0 bits (219), Expect = 2.360e-20
Identity = 43/86 (50.00%), Postives = 64/86 (74.42%), Query Frame = 1
Query:   13 DVEAIALANSNMGDYKLKSSPDYEVPEEMQLNVVKKQREMVLLEDSLHTMRSRFNSRFLALRTIKREILSTVSADNRRLREIDAEL 270
            DV  I  A +NMGD+KLKS P++ VPEE +LN  KK+R+M+LLE+ ++ +R  FNSRFLALR +K+++ + +   N+RLRE+ + L
Sbjct:   37 DVALIVEAENNMGDFKLKSDPEFVVPEEERLNTEKKRRQMILLEEGMYNIRMEFNSRFLALRDVKKKVCADIKDKNKRLRELQSAL 122          
BLAST of mRNA_Ecto-sp13_S_contig16460.4658.1 vs. uniprot
Match: A0A7S0N172_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N172_9CRYP)

HSP 1 Score: 86.3 bits (212), Expect = 8.660e-20
Identity = 44/87 (50.57%), Postives = 63/87 (72.41%), Query Frame = 1
Query:   13 DVEAIALANSNMGDYKLKSSPDYEVPEEMQLNVVKKQREMVLLEDSLHTMRSRFNSRFLALRTIKREILSTVSADNRRLREIDAELG 273
            D  AI  A + MGD+KLK+   + VPE ++++  KK+R+MVLLE+S+H +R  FN R LALR +KR IL+T++AD  R+R I+ ELG
Sbjct:   35 DAAAIRAAEARMGDWKLKTDEGFVVPEHLRIDADKKRRQMVLLEESVHAVRMGFNERLLALRDLKRRILTTIAADKARIRAINRELG 121          
BLAST of mRNA_Ecto-sp13_S_contig16460.4658.1 vs. uniprot
Match: A0A7S0RW45_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RW45_9CHLO)

HSP 1 Score: 87.8 bits (216), Expect = 1.150e-19
Identity = 44/87 (50.57%), Postives = 66/87 (75.86%), Query Frame = 1
Query:   13 DVEAIALANSNMGDYKLKSSPDYEVPEEMQLNVVKKQREMVLLEDSLHTMRSRFNSRFLALRTIKREILSTVSADNRRLREIDAELG 273
            DV AI  A +NMGD+KLK+  +Y VPEE + N VKK+R+MVLLE+S+H+++  FN+RFLALR +K +++  +   N R++EI+ +LG
Sbjct:   67 DVAAIQEAINNMGDFKLKTDVNYIVPEEQRQNAVKKRRQMVLLEESIHSIKMDFNTRFLALRDVKSQMVKDIERSNSRIKEINEKLG 153          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16460.4658.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC66_ECTSI6.670e-4497.73WD repeat protein n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5KI67_9PHAE1.140e-4397.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482T059_9ARCH1.160e-2360.92Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S0Z0C5_9CRYP1.660e-2356.32Hypothetical protein (Fragment) n=4 Tax=Hemiselmis... [more]
A0A7S1G790_9STRA3.770e-2358.14Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S0DYL1_9CRYP6.390e-2251.65Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A7S2C7U9_9STRA1.810e-2054.43Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S1X257_9CHLO2.360e-2050.00Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A7S0N172_9CRYP8.660e-2050.57Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S0RW45_9CHLO1.150e-1950.57Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16460contigEcto-sp13_S_contig16460:6..831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score162.9
Seed ortholog evalue6.9e-38
Seed eggNOG ortholog2880.D8LC66
Preferred nameCFAP44
Model size273
Hectar predicted targeting categoryother localisation
GOsGO:0001539,GO:0006928,GO:0008150,GO:0009987,GO:0040011,GO:0048870,GO:0051179,GO:0051674,GO:0060285
Exons2
EggNOG free text desc.microtubule binding
EggNOG OGsCOG2319@1,KOG2106@2759
Cds size273
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462865.5509276-CDS-Ecto-sp13_S_contig16460:5..1941681462865.5509276-CDS-Ecto-sp13_S_contig16460:5..194Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16460 6..194 -
1681462865.5635726-CDS-Ecto-sp13_S_contig16460:747..8311681462865.5635726-CDS-Ecto-sp13_S_contig16460:747..831Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16460 748..831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16460.4658.1prot_Ecto-sp13_S_contig16460.4658.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16460 6..831 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16460.4658.1

>prot_Ecto-sp13_S_contig16460.4658.1 ID=prot_Ecto-sp13_S_contig16460.4658.1|Name=mRNA_Ecto-sp13_S_contig16460.4658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
ECSRDVEAIALANSNMGDYKLKSSPDYEVPEEMQLNVVKKQREMVLLEDS
LHTMRSRFNSRFLALRTIKREILSTVSADNRRLREIDAELG
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mRNA from alignment at Ecto-sp13_S_contig16460:6..831-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16460.4658.1 ID=mRNA_Ecto-sp13_S_contig16460.4658.1|Name=mRNA_Ecto-sp13_S_contig16460.4658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=826bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16460:6..831- (Ectocarpus species13 EcNAP12_S_4_19m)
GAATGTTCTAGGGACGTTGAAGCCATCGCACTCGCCAATTCCAACATGGG GGACTACAAGCTCAAGTCTTCTCCCGATTACGAAGTAAGTGCCCATATGC GCAATTGTGACAAATAGTTGGAAAAACATGTGTAAAAGAGGGAGTCGTTC TCGACAGACATTGGGAGCGTGTACACACCCTACATGAACAGGATCTCCAC CGATCCACTAACTGCTACTTCTCAACATCAAAACAAGACAACCGTGAGGT AGTAGATGCTTTAAGTACATCCGGTGTATATTTTGAGTTTTTCGGAAACC GTTGACCTCCCCGGAAGTCCGCAGGGACACCGCGACAAGATCAATCGGTG TGTCGATTACTTCTACTCCACGCAGGCATTCCACGCTTTTGCCGGATGGG GTCGACCGCGTCTCAAGACTCTACCGGGCAGGGCATGACACCAGCATCGG CGAATCGACTCAAATCCACCAATTCTGGTTCCTCTTGCCTCCCCTGAAGC CCTGTTTTCTCTCCCGTTTCTTTATCCCCCCACTACTGCGACTTTCCTTC CTGTCCCCTCCCTTTCCTGGTTCTTTCCTCCTCGATCTCCCCCTCGACTG CTTTCTTCCGTTGCCTCACTGCCCCGCAATCCCGAAGGTGCCGGAAGAGA TGCAGCTGAACGTAGTAAAAAAGCAACGAGAGATGGTTCTCCTCGAGGAC TCGCTGCACACCATGAGATCGAGATTCAACAGCCGCTTCCTGGCCCTAAG GACGATCAAGCGAGAGATTCTCTCCACCGTATCGGCGGACAACAGGCGCC TGCGAGAGATCGATGCCGAGCTGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16460:6..831-

>mRNA_Ecto-sp13_S_contig16460.4658.1 ID=mRNA_Ecto-sp13_S_contig16460.4658.1|Name=mRNA_Ecto-sp13_S_contig16460.4658.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16460:6..831- (Ectocarpus species13 EcNAP12_S_4_19m)
GAATGTTCTAGGGACGTTGAAGCCATCGCACTCGCCAATTCCAACATGGG
GGACTACAAGCTCAAGTCTTCTCCCGATTACGAAGTGCCGGAAGAGATGC
AGCTGAACGTAGTAAAAAAGCAACGAGAGATGGTTCTCCTCGAGGACTCG
CTGCACACCATGAGATCGAGATTCAACAGCCGCTTCCTGGCCCTAAGGAC
GATCAAGCGAGAGATTCTCTCCACCGTATCGGCGGACAACAGGCGCCTGC
GAGAGATCGATGCCGAGCTGGGG
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