mRNA_Ecto-sp13_S_contig16450.4652.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16450.4652.1
Unique NamemRNA_Ecto-sp13_S_contig16450.4652.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16450.4652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16450contigEcto-sp13_S_contig16450:1525..2105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size581
Hectar predicted targeting categoryother localisation
Exons1
Cds size381
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462865.1618338-UTR-Ecto-sp13_S_contig16450:1524..15681681462865.1618338-UTR-Ecto-sp13_S_contig16450:1524..1568Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16450 1525..1568 +
1681462865.1848311-UTR-Ecto-sp13_S_contig16450:1949..21051681462865.1848311-UTR-Ecto-sp13_S_contig16450:1949..2105Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16450 1950..2105 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462865.1760175-CDS-Ecto-sp13_S_contig16450:1568..19491681462865.1760175-CDS-Ecto-sp13_S_contig16450:1568..1949Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16450 1569..1949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16450.4652.1prot_Ecto-sp13_S_contig16450.4652.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16450 1569..1949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16450.4652.1

>prot_Ecto-sp13_S_contig16450.4652.1 ID=prot_Ecto-sp13_S_contig16450.4652.1|Name=mRNA_Ecto-sp13_S_contig16450.4652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
MMSLVPPCHSFPRCTIEVFCCAPTPHSVERRNLGSGHHSQLLKYYFCGGF
HLPAVTFSAASTVDVAFSSESAGRTHATDCHLLERSKQKTDRDEVRRKFV
LKSCTSSTSPSSSASAEHALTHTRRP*
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mRNA from alignment at Ecto-sp13_S_contig16450:1525..2105+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16450.4652.1 ID=mRNA_Ecto-sp13_S_contig16450.4652.1|Name=mRNA_Ecto-sp13_S_contig16450.4652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=581bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16450:1525..2105+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGCTGGCATTCAGTGAGCGGTTGAGGGGTGGATACGGTAAGCATGATG
TCACTCGTTCCCCCATGTCACTCGTTCCCAAGGTGTACTATCGAAGTTTT
CTGCTGTGCTCCGACTCCGCACTCTGTGGAGCGTCGCAATCTTGGCTCTG
GGCACCACTCGCAGCTGCTGAAGTATTATTTTTGTGGTGGTTTTCATCTG
CCGGCGGTCACGTTTTCGGCCGCATCAACTGTTGATGTCGCGTTCAGCTC
GGAATCTGCTGGGCGGACGCACGCAACCGATTGTCACCTTCTGGAACGTT
CGAAACAAAAAACGGACCGTGACGAAGTGAGGAGGAAATTCGTGCTCAAG
TCTTGTACTTCCAGCACCAGCCCCAGCTCGAGCGCTTCAGCTGAACATGC
TCTAACACACACTCGCAGGCCCTGAAATCCGCGTTCATTGTTCAGCAAGC
GTCAATACGGGGCTGGGTTTGGTTGCGGAAAGTAAGGCGAACTCCGCTAG
TACGGCGATGGGGGATTCAGCAGCACAAGACTGTCTCTAGTGCCACGTCA
TCAGCCGGATCTGATGTCAACCTGACGGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16450:1525..2105+

>mRNA_Ecto-sp13_S_contig16450.4652.1 ID=mRNA_Ecto-sp13_S_contig16450.4652.1|Name=mRNA_Ecto-sp13_S_contig16450.4652.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16450:1525..2105+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGTCACTCGTTCCCCCATGTCACTCGTTCCCAAGGTGTACTATCGA
AGTTTTCTGCTGTGCTCCGACTCCGCACTCTGTGGAGCGTCGCAATCTTG
GCTCTGGGCACCACTCGCAGCTGCTGAAGTATTATTTTTGTGGTGGTTTT
CATCTGCCGGCGGTCACGTTTTCGGCCGCATCAACTGTTGATGTCGCGTT
CAGCTCGGAATCTGCTGGGCGGACGCACGCAACCGATTGTCACCTTCTGG
AACGTTCGAAACAAAAAACGGACCGTGACGAAGTGAGGAGGAAATTCGTG
CTCAAGTCTTGTACTTCCAGCACCAGCCCCAGCTCGAGCGCTTCAGCTGA
ACATGCTCTAACACACACTCGCAGGCCCTGA
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