mRNA_Ecto-sp13_S_contig10489.466.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10489.466.1
Unique NamemRNA_Ecto-sp13_S_contig10489.466.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10489.466.1 vs. uniprot
Match: A0A6H5JZM9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZM9_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 2.300e-48
Identity = 90/105 (85.71%), Postives = 92/105 (87.62%), Query Frame = -3 
Query:    2 EGSGGSGRPRGEAPCIGQDEGSVCGAAEGTPGSARDSTGGGQSAASKPDTTVNRVDRRQHRLADEARPKSDSGNCHDSCNYSAMSDTPRKLEKVFGSWEEIHPAA 316
            EG G SG  RGEAPCIG+ EGSVCGAAEGTPGS RD   GG+SA SKPD TVNRVD RQHRLADEARP SDSGNCHDSCNYSAMSDTPRKLEKVFGSWEEIHPAA
Sbjct: 1727 EGGGESGMQRGEAPCIGRAEGSVCGAAEGTPGSTRDIAEGGRSATSKPDRTVNRVDPRQHRLADEARPMSDSGNCHDSCNYSAMSDTPRKLEKVFGSWEEIHPAA 1831
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BLAST of mRNA_Ecto-sp13_S_contig10489.466.1 vs. uniprot
Match: D8LJN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJN6_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 1.110e-40
Identity = 80/105 (76.19%), Postives = 87/105 (82.86%), Query Frame = -3 
Query:    2 EGSGGSGRPRGEAPCIGQDEGSVCGAAEGTPGSARDSTGGGQSAASKPDTTVNRVDRRQHRLADEARPKSDSGNCHDSCNYSAMSDTPRKLEKVFGSWEEIHPAA 316
            EG G SG PR EAPCIG+DEGSVCGAA   PG+    T GG+SA SKPD TV+RVD RQ RLADEA+  SDSG+C+DSCNYSAMSDTPRKLEKVFGSWEEIHPAA
Sbjct: 1548 EGGGESGMPREEAPCIGRDEGSVCGAAXXXPGNXXXXTEGGRSATSKPDRTVDRVDPRQQRLADEAKSMSDSGHCYDSCNYSAMSDTPRKLEKVFGSWEEIHPAA 1652
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10489.466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZM9_9PHAE2.300e-4885.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJN6_ECTSI1.110e-4076.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10489contigEcto-sp13_S_contig10489:3671..3989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size321
Hectar predicted targeting categorymitochondrion
Exons1
Cds size318
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462534.0722942-CDS-Ecto-sp13_S_contig10489:3670..39881681462534.0722942-CDS-Ecto-sp13_S_contig10489:3670..3988Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10489 3671..3988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10489.466.1prot_Ecto-sp13_S_contig10489.466.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10489 3671..3988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10489.466.1

>prot_Ecto-sp13_S_contig10489.466.1 ID=prot_Ecto-sp13_S_contig10489.466.1|Name=mRNA_Ecto-sp13_S_contig10489.466.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp
ARLDVSLPRNRTPFRAFVAYLTSRCSCSCRDNSRSPTWASPHLPTDVVDG
LPCSPLCQACWQPTDLLQYCLSRSLEYLQQLRRHFPHLVRCTELLLSASH
SLRFLL
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mRNA from alignment at Ecto-sp13_S_contig10489:3671..3989+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10489.466.1 ID=mRNA_Ecto-sp13_S_contig10489.466.1|Name=mRNA_Ecto-sp13_S_contig10489.466.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=319bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10489:3671..3989+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCGGCTGGATGTATCTCTTCCCAGGAACCGAACACCTTTTCGAGCTTT
CGTGGCGTATCTGACATCGCGCTGTAGTTGCAGCTGTCGTGACAATTCCC
GGAGTCCGACTTGGGCCTCGCCTCATCTGCCAACCGATGTTGTCGACGGT
CTACCCTGTTCACCGTTGTGTCAGGCTTGCTGGCAGCCGACTGACCTCCT
CCAGTACTGTCTCTCGCGCTCCCTGGAGTACCTTCAGCAGCTCCGCAGAC
ACTTCCCTCATCTTGTCCGATGCACGGAGCTTCTCCTCTCGGCCTCCCAC
TCCCTCCGCTTCCTTCTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10489:3671..3989+

>mRNA_Ecto-sp13_S_contig10489.466.1 ID=mRNA_Ecto-sp13_S_contig10489.466.1|Name=mRNA_Ecto-sp13_S_contig10489.466.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10489:3671..3989+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCGGCTGGATGTATCTCTTCCCAGGAACCGAACACCTTTTCGAGCTTT
CGTGGCGTATCTGACATCGCGCTGTAGTTGCAGCTGTCGTGACAATTCCC
GGAGTCCGACTTGGGCCTCGCCTCATCTGCCAACCGATGTTGTCGACGGT
CTACCCTGTTCACCGTTGTGTCAGGCTTGCTGGCAGCCGACTGACCTCCT
CCAGTACTGTCTCTCGCGCTCCCTGGAGTACCTTCAGCAGCTCCGCAGAC
ACTTCCCTCATCTTGTCCGATGCACGGAGCTTCTCCTCTCGGCCTCCCAC
TCCCTCCGCTTCCTTCTG
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