mRNA_Ecto-sp13_S_contig1645.4650.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1645.4650.1
Unique NamemRNA_Ecto-sp13_S_contig1645.4650.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1645.4650.1 vs. uniprot
Match: D8LD48_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD48_ECTSI)

HSP 1 Score: 329 bits (844), Expect = 3.490e-106
Identity = 232/255 (90.98%), Postives = 234/255 (91.76%), Query Frame = 1 
Query:  160 MAVFPRVQQQGRHVSRGGGRGTXXXXXXXXXXXXXXXPRRTATAKQRASSSARSSPRLHLTQKRTPANARRSSGPVGNRFASNQRQASSSTKAKGRTSSVGAHRDSSGDRTTXXXXXXXXXXXXXXXXXXXSSLADGVAKVMTDLKGDITAVIDKAMGKVEAECGTFVTTVLESCSAGVSGREEDDETAAAALREIETWQASMASRRSEMLKEVESNSSNLSAVVERCRAALDSLQQAESRTLKSGLDRATGTKS 924
            MAVFPRVQQQGRH SRGGGRGTXXXXXXXXXXXXXXX RRT TAK+RASSS RSSPRLHLTQKRTPANARR SGPVGNRFASNQRQ   STKAKGRTSSVGAHRDSSG    XXXXXXXXXXXXXXXXXXX S AD VAKVM DLKGD TAVIDKAMGKVEAECGTFV TVLESCSAGVSGREE DETAAAALREIET QAS+ASRRSEMLKEVESNSSNLSAVVERCRAALDSLQQAESR LKSGLDRATGTKS
Sbjct:    1 MAVFPRVQQQGRHGSRGGGRGTXXXXXXXXXXXXXXXXRRTVTAKKRASSSVRSSPRLHLTQKRTPANARRGSGPVGNRFASNQRQ---STKAKGRTSSVGAHRDSSGGXXXXXXXXXXXXXXXXXXXXXXXSPADDVAKVMIDLKGDSTAVIDKAMGKVEAECGTFVMTVLESCSAGVSGREEHDETAAAALREIETRQASLASRRSEMLKEVESNSSNLSAVVERCRAALDSLQQAESRKLKSGLDRATGTKS 252
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BLAST of mRNA_Ecto-sp13_S_contig1645.4650.1 vs. uniprot
Match: A0A6H5LLS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLS0_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 6.390e-68
Identity = 152/165 (92.12%), Postives = 156/165 (94.55%), Query Frame = 1 
Query:  430 TKAKGRTSSVGAHRDSSGDRTTXXXXXXXXXXXXXXXXXXXSSLADGVAKVMTDLKGDITAVIDKAMGKVEAECGTFVTTVLESCSAGVSGREEDDETAAAALREIETWQASMASRRSEMLKEVESNSSNLSAVVERCRAALDSLQQAESRTLKSGLDRATGTKS 924
            TKAKGRTSSVGAHRDSSG RT XXXXXXXXXXXXXXXXXXXSS ADGVAK+M DLKGDITAVIDKAMGKVEAECGTFVTTVLESCSAGVSGREE  ETAAAALRE++T QASMASRRSEMLKEV SNSSNLSAVVERCRAALD+LQQAESR LKSGLDRATGTKS
Sbjct:   15 TKAKGRTSSVGAHRDSSGGRTXXXXXXXXXXXXXXXXXXXXSSPADGVAKLMIDLKGDITAVIDKAMGKVEAECGTFVTTVLESCSAGVSGREEHYETAAAALREMKTRQASMASRRSEMLKEVASNSSNLSAVVERCRAALDNLQQAESRKLKSGLDRATGTKS 179
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1645.4650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD48_ECTSI3.490e-10690.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LLS0_9PHAE6.390e-6892.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1645contigEcto-sp13_S_contig1645:8508..13582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1826
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_000440.1
Cds size924
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1645.4650.1prot_Ecto-sp13_S_contig1645.4650.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1645 9407..13579 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462865.0116377-UTR-Ecto-sp13_S_contig1645:8507..94061681462865.0116377-UTR-Ecto-sp13_S_contig1645:8507..9406Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1645 8508..9406 -
1681462865.0909317-UTR-Ecto-sp13_S_contig1645:13579..135821681462865.0909317-UTR-Ecto-sp13_S_contig1645:13579..13582Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1645 13580..13582 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462865.0228739-CDS-Ecto-sp13_S_contig1645:9406..94361681462865.0228739-CDS-Ecto-sp13_S_contig1645:9406..9436Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1645 9407..9436 -
1681462865.0333936-CDS-Ecto-sp13_S_contig1645:10175..102691681462865.0333936-CDS-Ecto-sp13_S_contig1645:10175..10269Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1645 10176..10269 -
1681462865.0435774-CDS-Ecto-sp13_S_contig1645:10873..110151681462865.0435774-CDS-Ecto-sp13_S_contig1645:10873..11015Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1645 10874..11015 -
1681462865.052424-CDS-Ecto-sp13_S_contig1645:11385..116201681462865.052424-CDS-Ecto-sp13_S_contig1645:11385..11620Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1645 11386..11620 -
1681462865.0609047-CDS-Ecto-sp13_S_contig1645:11989..121181681462865.0609047-CDS-Ecto-sp13_S_contig1645:11989..12118Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1645 11990..12118 -
1681462865.0706885-CDS-Ecto-sp13_S_contig1645:12972..131301681462865.0706885-CDS-Ecto-sp13_S_contig1645:12972..13130Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1645 12973..13130 -
1681462865.0809226-CDS-Ecto-sp13_S_contig1645:13443..135791681462865.0809226-CDS-Ecto-sp13_S_contig1645:13443..13579Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1645 13444..13579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1645.4650.1

>prot_Ecto-sp13_S_contig1645.4650.1 ID=prot_Ecto-sp13_S_contig1645.4650.1|Name=mRNA_Ecto-sp13_S_contig1645.4650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=308bp
MPFLQPEAIRTRASRDGTLHQLTMPCEGRIVQYSVQPFNRYAYPTSGQRL
APMAVFPRVQQQGRHVSRGGGRGTASSSSSSVTATKTTTPRRTATAKQRA
SSSARSSPRLHLTQKRTPANARRSSGPVGNRFASNQRQASSSTKAKGRTS
SVGAHRDSSGDRTTSSKAAKAASAAAGGGARKKSSLADGVAKVMTDLKGD
ITAVIDKAMGKVEAECGTFVTTVLESCSAGVSGREEDDETAAAALREIET
WQASMASRRSEMLKEVESNSSNLSAVVERCRAALDSLQQAESRTLKSGLD
RATGTKS*
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mRNA from alignment at Ecto-sp13_S_contig1645:8508..13582-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1645.4650.1 ID=mRNA_Ecto-sp13_S_contig1645.4650.1|Name=mRNA_Ecto-sp13_S_contig1645.4650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5075bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1645:8508..13582- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGATGCCGTTCTTGCAACCCGAGGCGATACGGACTCGCGCAAGCAGAGA
CGGCACTTTGCACCAACTGACGATGCCATGTGAAGGGCGTATAGTCCAGT
ATAGTGTGCAGCCCTTCAATCGTTACGCATATCCTACGAGTATGCAAGAT
CATGACGAAGGTGCATTTTCGTTTGCAGCGGAGGCATTTTAACACTGCAC
AATACAGTGTTCATGCAAGAAATCTGTGGAGCGGAAGCAAATGTTTGCAA
TACTACCGCTTATGGTTGTACCCCGGCGACACCGTGATGCCATGTAACCA
TGATGCTAAGGAGTCTACAACTAAGACCAGATTGCAGTATCAGCGGCAGG
GTTCTTCGTAACGGCGCCATCGCATCTCATGCCCATTGGAACCTAAATGT
CTGACGGGTTTGCTCGGCTTCGCCGGAACGGCAACGACCGTGTGCTACGC
AGGCGGCCAAAGACTCGCTCCGATGGCGGTGTTTCCTAGGGTGCAGCAGC
AGGGGCGTCACGTCAGCCGTGGTGGCGGCAGGGGCACGGCTTCGTCTTCG
TCGTCGTCCGTTACCGCCACAAAGACGACGACCCCGCGGCGAACGGCCAC
CGCCAAGCAGGTAACAGCATGAGGCACAGGAACGGGTGGACTGACGGCCT
GGTTCCTGCTGATGTTTGCGTCCCCGAGGGCAGATCTTGTTCGAATGGGT
TGTTTTGTAGTGCAATATGGGTTTGACGCAAGATATGACGTGCTACCGTC
GCTAGGTGCACTCTCCCATCGTCTCGCGGGGGCACAGCAATCGCTGATCG
ATATTTAGTACTCTGGATGTGCCTGCGGCAGCCTCCGGCCGGGAATTGAG
TAACCAGTTCTGTTTCGTGTGACATGCACCCACAAGATTTCCTCCACAAT
GTGTAGGTGCAGTTGCTTTCGAGGAGGAAGGGAGAAGAGCAAGCAGGGTT
AGTGCCAGTTCGCGGTTGTATTTGACGGACCCCTCCCCTCGATTTGAACC
AGATGTTCGCTGAACAAAGGAGGCAACAAAAAGGCCTATTCGGGAAATCT
GAAGTCACCTTCCCCGATCCTACCCCCGGCAGGACACCGCCTGTTGGAGT
CATCGCGAACACATGTTACACACTTAGTGCCTCGACCTCTAGAGATTCCA
ATACGCGGCTCCCTGCGGTAGACCACAGCTGATGGGGCGTACACCCAAGA
ACATCTCAAGCAGCCAGACCCTACCGTGCGACAATGCCGATGCCTGCCCA
TGTTTAGGGTAAGCTGGTCTGTCACCACGTGAATTTACCGCGTCAAATGC
AAGATCAGTGCGGGCAGAGGGAGATAGGTCGGAACGGTTTTCATTGGGAA
GTCAGCAATAACAACAACGACAACCTACCAGGTAGTGTTTTCCGCATCGT
AGCTTTTCCCCCGACAAATGTGGTCCCAACACCTGTCTATCTTCGTCCAT
GTCCCCGACTTCAGAGGGCATCCAGCAGCGCCCGGTCCTCTCCCAGGCTT
CACCTCACACAAAAGCGAACTCCAGCCAACGCTAGACGCAGCTCTGGCCC
CGTCGGAAACCGGTTCGCTTCCAACCAACGCCAGGCAAGCTCAGTTGTTG
CTCTCGTGTACAGGGATCTGCGGTATACTGGTTTTGTGAACATGAAGAAA
GCTCCGATGCTCGCATTATTGCACCCACCCCACGTTGCCTACAGCTCGAT
ATAGTGCTTTTTCGTTGTCCACCCTCCTAATCTACCTTTGCGGGTGAGAA
ACGCGAGTGACCGCCGTCGTCCCTTTCCCATTGTTTCATGCTACTATCTA
GCTGGTGGTGTTTGGGATTTCACGGTGTCACGTACACTGGAAACGCGTGC
TAACTTCCATGGTTTCATCCCGTCCAGCTTTGTTCGTCTTGTCCTTGCTT
GCGACCCCCACGCCGTCTTCATCATCTGCCACCCGAACGTGTTGTTCACC
CGCGACGCACAGAGCACGAAAGCCAAGGGAAGAACTTCCTCTGTTGGCGC
ACACCGCGACAGCAGTGGCGATCGCACCACATCAAGCAAGGCGGCGAAAG
CGGCCTCGGCAGCGGCAGGCGGCGGAGCACGGAAAAAGTCGTCTTTGGCA
GACGGCGTGGCCAAGGTCATGACTGATCTCAAGGGAGATATCACCGCAGT
CATCGACAAGGCCATGGGGAAGGTGGAGGCTGAGTGCGGCACCTTTGGTG
AGAGCGAACGACTTTTTTTGTTGTGTTTCGGGGCTCGTGCTTCTCTCAAC
TACGGCAGCGTCAACTCGTATCTCTGATGGTGGTACTTTCGTACGTTGTA
GAGGTAGGTCCCTCTGTCTGTACGGTGGGTGTCCGGTACAATGTCGGGCG
GGTTCCATCTCTTGGCAAGGATGAAGTGGTCAAGGTGTGCTACACTCTGA
AGATGGCGGGTGAATCGACCTGGCACATGCTCCCCCCAAACAAAAAGGGA
TCTCTTTTGTAGGTACCCAATCTCTCCTAGTGGGTTGCTTACCCAACCAA
ACGGAGTGCGTGCTCTATTCCGTCCGACAACGACAATGCCCTGTTGCCAT
CTGGTATGTGGTGGTAGTGACGACGGTGCTGGAAAGTTGCTCCGCTGGCG
TCTCCGGGCGGGAGGAAGACGACGAGACGGCGGCCGCGGCATTGCGCGAG
ATAGAGACATGGCAGGCCTCGATGGCTTCCCGGCGTTCGGAGATGCTCAA
GGAGGTCGAGTGAGTTGCTCCCTGTTCTTGTCATCTCAGCTCAGCTCAGC
TCAGCCCTGTCTCACAGCTCAATATCTCATCTCATATCGCAGTTTTTAAT
GTCAGCTCATCTCAGAAGGAAATTCTCATCTTGTTGTTGCCTCAACTGAA
TTCAGACAATCTTAGGCCATCTCATGTCCTTGTTTGTCAGCTCGTCATAT
CGACCTGTTGTCCCTACCTCTTTGTTGAGGGCGTGAATGTCCTCCAGGTA
TCACGTCCCATTCCTACCTACAGGACGCGCGTTCTTTCTCGCCACGCTAC
ACGGGCATACTTTCGCGATTTCGTCGGTTTCGGCCGTGAAACGGATACAC
CTCTTCCTCAACTCTCGCAAGTCCAGCTATACATTCGTATTTTTTTCTCT
TGTTCTTCGAACCCCATCTGGAAATGTACATTTGCCGTCATTTCTGTCTG
CTCTCGCAAGAGTCTGCACCTCCCTCCGCAAGCTATTTCACTGTTGTGTC
CACTGTCATTTTGCTGAAAGTCTTTGAACCATCCTCCTTGAGCTTCGGCG
AAGGCACGTTCACTACGTGCGTATTCTCCTCCTTAAACCCGACGTTTTCT
TCTCCGTTGACAGGAGCAACAGCAGCAACTTGTCAGCGGTTGTCGAGCGC
TGTAGAGCTGCCCTGGACAGTCTGCAGCAGGCGGAGAGCCGCACGCTCAA
GAGTGGCGTGAGTATACATTACGATGAGTAGCCCTCTGCCACCGTTCGGT
GCTCTTCTTCGCGAAGGGAAGGGTGGCTAGGCCGAAGAACAAGTGGTTAG
AAAGCTCAAGATCGACTGTGTGCAATGCTGCCGAGGAGATCGGCGCCGAA
AATTCTCTTGTTGCGGAGAAAAACGAAGGAAGAAAGTCACCGCAGGCGCG
ATGCAAAGCGTGTTGTAGTGACTAGTTCGAAGACGATCTGACGGAAGGTC
CAAAGTGAATTCTGGGGGAGATATTGTTGACGCAACACCATGTGGTCATC
CTCGTCCCCTCGATTTTGCTTGAGCTCAACCGAACAAAACATCGAGTCGC
GGGAGCTGAATCATGTACATGTTGTGTCTTTCATTGTAGTCTTGTCTTTT
ATTTGCCGTGCCGTGTGGCACCTTCATGTTGCACGCCCAACACGACCATC
GCATGCAGTTTCAGCAGAGGGTGGTATGGTGTGGACAGAGCAGAGGAAGT
GACGTTTGACGTCAAAGCCTGTCGTGCATAATAGACCAATCAATGATTTC
CTGTGACACAATAGACCAATCAATGATTTCGTGTGACACTTGGCTCTCTT
TTGGCTTGTGTGCTACGAAACTGGCATCTGATAGCTTCACGCACGCTGTC
AAGGAAAGGTGCTTGTACAGCTGCAGCAGTGCATTAGCTTGGCAACGTTG
ACTATGACCCGAAACGCTTTCGCATCCTACACGTATCCACCCGCAGCTAG
ACCGAGCAACGGGGACGAAGAGCTGATTTGAACCGAGGTCGGTGGGAGGG
GCCAAGCGGAAACAAATTTCCAGGCTCATCGCGCCACGATACGTTGGCGG
AAAGTCTGAAAATTTCACGAGTCCTGTTGGTGTCAGCCTTCGAACGACGC
GGACAAAGTACTGTATGGCCGTTCACTTGCACGTGCGCGCGTAGAGTGTG
AGCTGGGTTAGGGTCAGGGAGGAAGTTATCGTTCCGAAGAAAGGGGTAGG
GGTACGACTTCCTTCCCGTGTCACCGCTATTGCAGCGCACCTTTTGCATA
GCTCATGTTTGCATGCGGTCGTCTTTGCGCAAACGTGTCCTGTGGCACCT
TTCCGAGTGTTGATGTGGCCTAGAAAAAGTGAGGCATACGTATCTCCAGG
CTTTCGGTCTACTCGACCCTTCTTCAGCGAGAGGCCTGCCCGGGAAGATG
CTAGCCCCGCAGATTCCAGACATTGCATCTACATGATGGCTGATGATAGG
GTCGCCCCTCTCTTTCTTTTCCTCCCCTTCGGGACTCTGGTGAGAGTGAG
CTTCAACGGTGGTTTGTCAGCCAGCCTTGACTACGTGAGCCAGGCTATAC
GGATGTAGGTCCTGGCAAGCTGCCATGGTCAGTAGGGGGAGCTGTTGTAG
CTATCGCGTGTCAGGGTATCATGACATCGATGGCTTCGTGTTAGCACACG
CTTGACGCTGGATACGTTGGTGTCGCCTAGCGTGTCCGTCAGCCCTTCCA
ACCGAACCATGGACCACTGCGGAGGTACTCCTTGAGCGTTTTGGTGGGGG
GAGCGAAGGACCATCAGGGAATCGGTATGAGAAGTAGTGTGGGAGGGGCA
AGAACCGAAGGAATAGGGGACATTGGAACGTGTCAGGGTCGGGGAGGGAG
TAAGTTTGGTGCAAGAGGAGCAACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1645:8508..13582-

>mRNA_Ecto-sp13_S_contig1645.4650.1 ID=mRNA_Ecto-sp13_S_contig1645.4650.1|Name=mRNA_Ecto-sp13_S_contig1645.4650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=924bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1645:8508..13582- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGTTCTTGCAACCCGAGGCGATACGGACTCGCGCAAGCAGAGACGG
CACTTTGCACCAACTGACGATGCCATGTGAAGGGCGTATAGTCCAGTATA
GTGTGCAGCCCTTCAATCGTTACGCATATCCTACGAGCGGCCAAAGACTC
GCTCCGATGGCGGTGTTTCCTAGGGTGCAGCAGCAGGGGCGTCACGTCAG
CCGTGGTGGCGGCAGGGGCACGGCTTCGTCTTCGTCGTCGTCCGTTACCG
CCACAAAGACGACGACCCCGCGGCGAACGGCCACCGCCAAGCAGAGGGCA
TCCAGCAGCGCCCGGTCCTCTCCCAGGCTTCACCTCACACAAAAGCGAAC
TCCAGCCAACGCTAGACGCAGCTCTGGCCCCGTCGGAAACCGGTTCGCTT
CCAACCAACGCCAGGCAAGCTCAAGCACGAAAGCCAAGGGAAGAACTTCC
TCTGTTGGCGCACACCGCGACAGCAGTGGCGATCGCACCACATCAAGCAA
GGCGGCGAAAGCGGCCTCGGCAGCGGCAGGCGGCGGAGCACGGAAAAAGT
CGTCTTTGGCAGACGGCGTGGCCAAGGTCATGACTGATCTCAAGGGAGAT
ATCACCGCAGTCATCGACAAGGCCATGGGGAAGGTGGAGGCTGAGTGCGG
CACCTTTGTGACGACGGTGCTGGAAAGTTGCTCCGCTGGCGTCTCCGGGC
GGGAGGAAGACGACGAGACGGCGGCCGCGGCATTGCGCGAGATAGAGACA
TGGCAGGCCTCGATGGCTTCCCGGCGTTCGGAGATGCTCAAGGAGGTCGA
GAGCAACAGCAGCAACTTGTCAGCGGTTGTCGAGCGCTGTAGAGCTGCCC
TGGACAGTCTGCAGCAGGCGGAGAGCCGCACGCTCAAGAGTGGCCTAGAC
CGAGCAACGGGGACGAAGAGCTGA
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