prot_Ecto-sp13_S_contig16446.4647.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16446.4647.1
Unique Nameprot_Ecto-sp13_S_contig16446.4647.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length308
Homology
BLAST of mRNA_Ecto-sp13_S_contig16446.4647.1 vs. uniprot
Match: D7G280_ECTSI (TAFII55_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G280_ECTSI)

HSP 1 Score: 440 bits (1131), Expect = 1.630e-152
Identity = 299/308 (97.08%), Postives = 299/308 (97.08%), Query Frame = 0
Query:    1 MSTAYRQLVLRLPDGLKETMRERVAADAGMEGVDFTPEKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVLKMQQDVLEGPDRSRKAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVDGDAVTFEHEEIVPFEPWMADPKFAALGRLEGITLEITGTTEKPEAGAXXXXXXXXXXXGSTAPRLFGSELLYEHPEILLAVV 308
            MST YRQLVLRLPDGLKE MRERVAAD GMEGVDFTPEKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVLKMQQDV EGPDRSRKAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EV GD VTFEHEEIVPFEPWMADPKFAALGRLEGITLEITGTTEKPEAGA XXXXXXXXX GSTAPRLFGSELLYEHPEILLAVV
Sbjct:    1 MSTTYRQLVLRLPDGLKEAMRERVAADTGMEGVDFTPEKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVLKMQQDVPEGPDRSRKAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EVGGDGVTFEHEEIVPFEPWMADPKFAALGRLEGITLEITGTTEKPEAGAAXXXXXXXXXEGSTAPRLFGSELLYEHPEILLAVV 307          
BLAST of mRNA_Ecto-sp13_S_contig16446.4647.1 vs. uniprot
Match: A0A835YLK6_9STRA (TAFII55 protein conserved region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK6_9STRA)

HSP 1 Score: 186 bits (472), Expect = 2.380e-53
Identity = 117/302 (38.74%), Postives = 154/302 (50.99%), Query Frame = 0
Query:    5 YRQLVLRLPDGLKETMRERVAADAGMEGVDFTPEKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVLKMQQDVLEGPDRSRKAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVDGDAVTFEHEEIVPFEPWMADPKFAALGRLEGITLEITGTTEKPEAGAXXXXXXXXXXXGSTAPRLFGSELLYEHPEILLA 306
            YRQL+LR+PD LK  +RERV A    + +DF  + +   ++ FT+DG++YPARLV++PC LET KT D   ++KS D+GQMLIVY+DE+A+  D  +AS +GP + Y DG+TPPT+NIVRR+FVKARP  GKF +A+V+ VESQ+  +       P                                                                     VT  HEEIV FEPWM DP  A  GR+ G+TL+ITG++   E  A                 LFG E+L  HPE LLA
Sbjct:    9 YRQLILRVPDKLKGRVRERVQAGQS-DNMDFVQDGENPLKYVFTIDGERYPARLVNLPCNLETLKTTDNTMYYKSADIGQMLIVYEDEDAFNADAEDAS-IGPAQYYADGITPPTRNIVRRKFVKARPVLGKFPKAQVMTVESQLEMLINATAAEP---------------------------------------------------------------------VTEVHEEIVDFEPWMLDPSAAITGRVAGVTLQITGSSNVTEMRA-----------AGEGGALFGHEVLAYHPEALLA 228          
BLAST of mRNA_Ecto-sp13_S_contig16446.4647.1 vs. uniprot
Match: A0A7S2RHU4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHU4_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.900e-20
Identity = 60/157 (38.22%), Postives = 91/157 (57.96%), Query Frame = 0
Query:    6 RQLVLR-LPDGLKETMRERVAADAGMEGVDF---------TPEKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVLKM 152
            RQ++LR LP+ L E +RE++  +  +  V F         T +   S++  F +    YP  LV++PC +E+ KT D+ T FKS D+GQMLIV+++E   +K +    GV  QR +  GLTPPT  + RRRF + + +   F R EV  VE ++LK+
Sbjct:   14 RQVILRILPESLLEAIREKLV-EGSLSDVQFFFEDPPALSTLQVSPSQKMVFQLGDMIYPGLLVNLPCPVESHKTFDRITTFKSADIGQMLIVFENEGEREKAE-KECGV-EQRFFHSGLTPPTSYVTRRRFAQTKSELRSFTRKEVSEVEDELLKL 167          
BLAST of mRNA_Ecto-sp13_S_contig16446.4647.1 vs. uniprot
Match: A0A397DDH0_9STRA (TAFII55_N domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DDH0_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.580e-18
Identity = 55/152 (36.18%), Postives = 86/152 (56.58%), Query Frame = 0
Query:    7 QLVLRLPDGLKETMRERVAADAGMEGVDFTPEKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLY------PDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVLKM 152
            Q +LR+P  + E +R+++A +  + GVD       +R F F +D  + PA L  +PC++ET KT D++ F+KSGD+GQ+L+V+                  Q LY      P G+TPPT NIV+R++ K R     F +A+V RVE  ++K+
Sbjct:    4 QYLLRVPKRVGEELRKKMA-EKEVRGVDVVAGAD-NRNFKFRIDDTELPATLCQLPCIVETHKTYDEKLFYKSGDIGQILLVHDTPEE-------------QMLYETVTELPGGITPPTTNIVKRKYAKTRKS-PIFPKADVARVEDTLVKI 139          
BLAST of mRNA_Ecto-sp13_S_contig16446.4647.1 vs. uniprot
Match: A0A2V3IJD7_9FLOR (Transcription initiation factor TFIID subunit 7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJD7_9FLOR)

HSP 1 Score: 93.6 bits (231), Expect = 4.250e-18
Identity = 57/150 (38.00%), Postives = 79/150 (52.67%), Query Frame = 0
Query:    7 QLVLRLPDGLKETMRERVAADAGMEGVD-------FTPEKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQV 149
            Q +LRLP  L E MR  ++++   EG         F  + K  R   FT+DGK YPA L+D+PC++ET KT DKRTF+KSGD+ Q+L+V   +    K              PDG+TP TK   +R     +P    F R EV  +E ++
Sbjct:    5 QFILRLPQPLVEPMRFALSSNKKREGAGDDRQASKFEIDFKDERNAIFTIDGKHYPASLMDLPCIVETHKTADKRTFYKSGDLHQVLVVRMPDEPVPK----------HTQLPDGITPATKGAAKR----MKPPERFFTRDEVELIERRI 140          
BLAST of mRNA_Ecto-sp13_S_contig16446.4647.1 vs. uniprot
Match: A0A8J2T034_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T034_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 7.280e-18
Identity = 56/142 (39.44%), Postives = 83/142 (58.45%), Query Frame = 0
Query:   20 MRERVAADAGMEGVDFTPEKKGSRR--------FTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNAS---GVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVL 150
            + ++VA D   EGV+FTPE   S +        F   +D    PARLV++P ++ET KT D+ T+ K GDVGQ+L+V+KDE++  +D    +   G     ++PDGLTPP ++++RRRF KAR    K    E +R    +L
Sbjct:   67 LEQKVAKDK-TEGVEFTPEGDTSVKQDDFHSLDFRCKIDDLDLPARLVNLPTIVETHKTWDRETYVKCGDVGQILLVFKDESSRTQDKARQAAHAGSAWSLVHPDGLTPPLQDVIRRRFSKARKRSRKDVTVEEVRRAEDLL 207          
BLAST of mRNA_Ecto-sp13_S_contig16446.4647.1 vs. uniprot
Match: A0A1V9ZGC5_9STRA (TAFII55_N domain-containing protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZGC5_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.250e-17
Identity = 55/160 (34.38%), Postives = 88/160 (55.00%), Query Frame = 0
Query:    7 QLVLRLPDGLKETMRERVAADAGMEGVDFTP------------EKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKAR--PDRGKFDRAEVIRVESQVLKM 152
            Q +LR+P  +   +R+++  +  + GVD               +   ++ F F +DG++YP  L  +PC++ET KT D   F+KSG++GQ+ +V+  EN  KK      G       P GLTPPT NIV+R++ K +  PD   F +A+V RVE  ++K+
Sbjct:    3 QYLLRVPRKIGNELRKKIQ-EKDINGVDLVAGGMSIRVYESNDDVADNKYFKFHIDGQEYPVTLNQLPCIMETHKTYDDNLFYKSGEIGQIFMVH--ENFEKK-----KGYEDVTELPSGLTPPTTNIVKRKYAKTKKYPD---FPKADVARVEDGLIKI 151          
BLAST of mRNA_Ecto-sp13_S_contig16446.4647.1 vs. uniprot
Match: A0A7S3JUW2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUW2_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.530e-17
Identity = 57/143 (39.86%), Postives = 79/143 (55.24%), Query Frame = 0
Query:    2 STAYRQLVLRL--PDGLKETMRERVAADAGMEGVDFTPEKKG-----SRRFTFTMDGKKYPARLVDMPCVLETQKTLDK-RTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGK 136
            +T   QL+L    PD L +      AA+ G E      E++      SRR    + G  YP RLV++P ++ET KT D  +  +K GDVGQ++IVY++E A + D+G       Q +Y DG++PP KN V RRF KAR  R K
Sbjct:    3 TTVQTQLLLHAESPDVLAKLSELVDAAEGGGELEIVAEEREANENESSRRMKLVIMGHTYPTRLVNLPTLVETHKTFDNGKNVYKCGDVGQVVIVYQNEAARRADEGRTIHKAWQHVYQDGISPPLKNCVERRFAKARRRRAK 145          
BLAST of mRNA_Ecto-sp13_S_contig16446.4647.1 vs. uniprot
Match: W4GBL9_9STRA (TAFII55_N domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GBL9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 6.080e-17
Identity = 55/152 (36.18%), Postives = 86/152 (56.58%), Query Frame = 0
Query:    7 QLVLRLPDGLKETMRERVAADAGMEGVDFTPEKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLY------PDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVLKM 152
            Q +LR+P  + E +R+++A +  + GVD       +R F F +D  + PA L  +PC++ET KT D++ F+KSGD+GQ+L+V+                  Q LY      P G+TPPT NIV+R++ K R     F +A+V RVE  ++K+
Sbjct:    4 QYLLRVPKRVGEELRKKMA-EKEVRGVDVVAGAD-NRNFKFRIDDTELPATLCQLPCIVETHKTYDEKLFYKSGDIGQILLVHDTPEE-------------QMLYETVTELPGGITPPTTNIVKRKYAKTRKS-PIFPKADVARVEDTLVKI 139          
BLAST of mRNA_Ecto-sp13_S_contig16446.4647.1 vs. uniprot
Match: A0A397VEC4_9GLOM (TAFII55 protein conserved region-domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397VEC4_9GLOM)

HSP 1 Score: 90.5 bits (223), Expect = 1.110e-16
Identity = 56/134 (41.79%), Postives = 74/134 (55.22%), Query Frame = 0
Query:    7 QLVLRL--PDGLKETMRERVAADAGMEGVDFTPEK-----KGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYK----DENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVK 129
            Q +LRL  P+ +K+  RE+V          F PE      K SRR  FT + +KY ARLVD+PC++E QKT + + F+K  D+ QMLIV       E  +   +  AS    Q  +PDGLTPP KN+  RRF K
Sbjct:   91 QFILRLMVPEDVKQRFREKVRRQK------FAPEDVEIMFKDSRRAIFTFENQKYSARLVDLPCIIEAQKTFNNKQFYKVADICQMLIVESPIDTQEEVHMFTENMASSSIDQFEWPDGLTPPLKNVRNRRFRK 218          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16446.4647.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G280_ECTSI1.630e-15297.08TAFII55_N domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YLK6_9STRA2.380e-5338.74TAFII55 protein conserved region-domain-containing... [more]
A0A7S2RHU4_9STRA2.900e-2038.22Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
A0A397DDH0_9STRA1.580e-1836.18TAFII55_N domain-containing protein n=2 Tax=Aphano... [more]
A0A2V3IJD7_9FLOR4.250e-1838.00Transcription initiation factor TFIID subunit 7 n=... [more]
A0A8J2T034_9STRA7.280e-1839.44Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A1V9ZGC5_9STRA3.250e-1734.38TAFII55_N domain-containing protein (Fragment) n=1... [more]
A0A7S3JUW2_9STRA4.530e-1739.86Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
W4GBL9_9STRA6.080e-1736.18TAFII55_N domain-containing protein n=5 Tax=Aphano... [more]
A0A397VEC4_9GLOM1.110e-1641.79TAFII55 protein conserved region-domain-containing... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006751TAFII55 protein, conserved regionSMARTSM01370TAFII55_N_2coord: 7..231
e-value: 5.4E-31
score: 119.0
IPR006751TAFII55 protein, conserved regionPFAMPF04658TAFII55_Ncoord: 7..133
e-value: 1.4E-28
score: 99.6
IPR037817Transcription initiation factor TFIID subunit 7PANTHERPTHR12228TRANSCRIPTION INITIATION FACTOR TFIID 55 KD SUBUNIT-RELATEDcoord: 6..146

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16446contigEcto-sp13_S_contig16446:598..3353 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16446.4647.1mRNA_Ecto-sp13_S_contig16446.4647.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16446 598..3353 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16446.4647.1 ID=prot_Ecto-sp13_S_contig16446.4647.1|Name=mRNA_Ecto-sp13_S_contig16446.4647.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=308bp
MSTAYRQLVLRLPDGLKETMRERVAADAGMEGVDFTPEKKGSRRFTFTMD
GKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDG
NASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVL
KMQQDVLEGPDRSRKAGSSGGGGITAGGGMSGSSSRGGSADASGGGSSSS
RSRTSRSSGGGGGSSGGGGGGGGEVDGDAVTFEHEEIVPFEPWMADPKFA
ALGRLEGITLEITGTTEKPEAGAAGATGGGGGGEGSTAPRLFGSELLYEH
PEILLAVV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006751TAFII55_prot_cons_reg
IPR037817TAF7