mRNA_Ecto-sp13_S_contig16446.4647.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16446.4647.1
Unique NamemRNA_Ecto-sp13_S_contig16446.4647.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16446.4647.1 vs. uniprot
Match: D7G280_ECTSI (TAFII55_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G280_ECTSI)

HSP 1 Score: 440 bits (1131), Expect = 1.630e-152
Identity = 299/308 (97.08%), Postives = 299/308 (97.08%), Query Frame = 1
Query:    1 MSTAYRQLVLRLPDGLKETMRERVAADAGMEGVDFTPEKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVLKMQQDVLEGPDRSRKAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVDGDAVTFEHEEIVPFEPWMADPKFAALGRLEGITLEITGTTEKPEAGAXXXXXXXXXXXGSTAPRLFGSELLYEHPEILLAVV 924
            MST YRQLVLRLPDGLKE MRERVAAD GMEGVDFTPEKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVLKMQQDV EGPDRSRKAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EV GD VTFEHEEIVPFEPWMADPKFAALGRLEGITLEITGTTEKPEAGA XXXXXXXXX GSTAPRLFGSELLYEHPEILLAVV
Sbjct:    1 MSTTYRQLVLRLPDGLKEAMRERVAADTGMEGVDFTPEKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVLKMQQDVPEGPDRSRKAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-EVGGDGVTFEHEEIVPFEPWMADPKFAALGRLEGITLEITGTTEKPEAGAAXXXXXXXXXEGSTAPRLFGSELLYEHPEILLAVV 307          
BLAST of mRNA_Ecto-sp13_S_contig16446.4647.1 vs. uniprot
Match: A0A835YLK6_9STRA (TAFII55 protein conserved region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLK6_9STRA)

HSP 1 Score: 186 bits (472), Expect = 2.380e-53
Identity = 117/302 (38.74%), Postives = 154/302 (50.99%), Query Frame = 1
Query:   13 YRQLVLRLPDGLKETMRERVAADAGMEGVDFTPEKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVLKMQQDVLEGPDRSRKAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVDGDAVTFEHEEIVPFEPWMADPKFAALGRLEGITLEITGTTEKPEAGAXXXXXXXXXXXGSTAPRLFGSELLYEHPEILLA 918
            YRQL+LR+PD LK  +RERV A    + +DF  + +   ++ FT+DG++YPARLV++PC LET KT D   ++KS D+GQMLIVY+DE+A+  D  +AS +GP + Y DG+TPPT+NIVRR+FVKARP  GKF +A+V+ VESQ+  +       P                                                                     VT  HEEIV FEPWM DP  A  GR+ G+TL+ITG++   E  A                 LFG E+L  HPE LLA
Sbjct:    9 YRQLILRVPDKLKGRVRERVQAGQS-DNMDFVQDGENPLKYVFTIDGERYPARLVNLPCNLETLKTTDNTMYYKSADIGQMLIVYEDEDAFNADAEDAS-IGPAQYYADGITPPTRNIVRRKFVKARPVLGKFPKAQVMTVESQLEMLINATAAEP---------------------------------------------------------------------VTEVHEEIVDFEPWMLDPSAAITGRVAGVTLQITGSSNVTEMRA-----------AGEGGALFGHEVLAYHPEALLA 228          
BLAST of mRNA_Ecto-sp13_S_contig16446.4647.1 vs. uniprot
Match: A0A7S2RHU4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RHU4_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.900e-20
Identity = 60/157 (38.22%), Postives = 91/157 (57.96%), Query Frame = 1
Query:   16 RQLVLR-LPDGLKETMRERVAADAGMEGVDF---------TPEKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVLKM 456
            RQ++LR LP+ L E +RE++  +  +  V F         T +   S++  F +    YP  LV++PC +E+ KT D+ T FKS D+GQMLIV+++E   +K +    GV  QR +  GLTPPT  + RRRF + + +   F R EV  VE ++LK+
Sbjct:   14 RQVILRILPESLLEAIREKLV-EGSLSDVQFFFEDPPALSTLQVSPSQKMVFQLGDMIYPGLLVNLPCPVESHKTFDRITTFKSADIGQMLIVFENEGEREKAE-KECGV-EQRFFHSGLTPPTSYVTRRRFAQTKSELRSFTRKEVSEVEDELLKL 167          
BLAST of mRNA_Ecto-sp13_S_contig16446.4647.1 vs. uniprot
Match: A0A397DDH0_9STRA (TAFII55_N domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DDH0_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.580e-18
Identity = 55/152 (36.18%), Postives = 86/152 (56.58%), Query Frame = 1
Query:   19 QLVLRLPDGLKETMRERVAADAGMEGVDFTPEKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLY------PDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVLKM 456
            Q +LR+P  + E +R+++A +  + GVD       +R F F +D  + PA L  +PC++ET KT D++ F+KSGD+GQ+L+V+                  Q LY      P G+TPPT NIV+R++ K R     F +A+V RVE  ++K+
Sbjct:    4 QYLLRVPKRVGEELRKKMA-EKEVRGVDVVAGAD-NRNFKFRIDDTELPATLCQLPCIVETHKTYDEKLFYKSGDIGQILLVHDTPEE-------------QMLYETVTELPGGITPPTTNIVKRKYAKTRKS-PIFPKADVARVEDTLVKI 139          
BLAST of mRNA_Ecto-sp13_S_contig16446.4647.1 vs. uniprot
Match: A0A2V3IJD7_9FLOR (Transcription initiation factor TFIID subunit 7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJD7_9FLOR)

HSP 1 Score: 93.6 bits (231), Expect = 4.250e-18
Identity = 57/150 (38.00%), Postives = 79/150 (52.67%), Query Frame = 1
Query:   19 QLVLRLPDGLKETMRERVAADAGMEGVD-------FTPEKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQV 447
            Q +LRLP  L E MR  ++++   EG         F  + K  R   FT+DGK YPA L+D+PC++ET KT DKRTF+KSGD+ Q+L+V   +    K              PDG+TP TK   +R     +P    F R EV  +E ++
Sbjct:    5 QFILRLPQPLVEPMRFALSSNKKREGAGDDRQASKFEIDFKDERNAIFTIDGKHYPASLMDLPCIVETHKTADKRTFYKSGDLHQVLVVRMPDEPVPK----------HTQLPDGITPATKGAAKR----MKPPERFFTRDEVELIERRI 140          
BLAST of mRNA_Ecto-sp13_S_contig16446.4647.1 vs. uniprot
Match: A0A8J2T034_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T034_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 7.280e-18
Identity = 56/142 (39.44%), Postives = 83/142 (58.45%), Query Frame = 1
Query:   58 MRERVAADAGMEGVDFTPEKKGSRR--------FTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNAS---GVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVL 450
            + ++VA D   EGV+FTPE   S +        F   +D    PARLV++P ++ET KT D+ T+ K GDVGQ+L+V+KDE++  +D    +   G     ++PDGLTPP ++++RRRF KAR    K    E +R    +L
Sbjct:   67 LEQKVAKDK-TEGVEFTPEGDTSVKQDDFHSLDFRCKIDDLDLPARLVNLPTIVETHKTWDRETYVKCGDVGQILLVFKDESSRTQDKARQAAHAGSAWSLVHPDGLTPPLQDVIRRRFSKARKRSRKDVTVEEVRRAEDLL 207          
BLAST of mRNA_Ecto-sp13_S_contig16446.4647.1 vs. uniprot
Match: A0A1V9ZGC5_9STRA (TAFII55_N domain-containing protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZGC5_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.250e-17
Identity = 55/160 (34.38%), Postives = 88/160 (55.00%), Query Frame = 1
Query:   19 QLVLRLPDGLKETMRERVAADAGMEGVDFTP------------EKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKAR--PDRGKFDRAEVIRVESQVLKM 456
            Q +LR+P  +   +R+++  +  + GVD               +   ++ F F +DG++YP  L  +PC++ET KT D   F+KSG++GQ+ +V+  EN  KK      G       P GLTPPT NIV+R++ K +  PD   F +A+V RVE  ++K+
Sbjct:    3 QYLLRVPRKIGNELRKKIQ-EKDINGVDLVAGGMSIRVYESNDDVADNKYFKFHIDGQEYPVTLNQLPCIMETHKTYDDNLFYKSGEIGQIFMVH--ENFEKK-----KGYEDVTELPSGLTPPTTNIVKRKYAKTKKYPD---FPKADVARVEDGLIKI 151          
BLAST of mRNA_Ecto-sp13_S_contig16446.4647.1 vs. uniprot
Match: A0A7S3JUW2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUW2_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.530e-17
Identity = 57/143 (39.86%), Postives = 79/143 (55.24%), Query Frame = 1
Query:    4 STAYRQLVLRL--PDGLKETMRERVAADAGMEGVDFTPEKKG-----SRRFTFTMDGKKYPARLVDMPCVLETQKTLDK-RTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGK 408
            +T   QL+L    PD L +      AA+ G E      E++      SRR    + G  YP RLV++P ++ET KT D  +  +K GDVGQ++IVY++E A + D+G       Q +Y DG++PP KN V RRF KAR  R K
Sbjct:    3 TTVQTQLLLHAESPDVLAKLSELVDAAEGGGELEIVAEEREANENESSRRMKLVIMGHTYPTRLVNLPTLVETHKTFDNGKNVYKCGDVGQVVIVYQNEAARRADEGRTIHKAWQHVYQDGISPPLKNCVERRFAKARRRRAK 145          
BLAST of mRNA_Ecto-sp13_S_contig16446.4647.1 vs. uniprot
Match: W4GBL9_9STRA (TAFII55_N domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GBL9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 6.080e-17
Identity = 55/152 (36.18%), Postives = 86/152 (56.58%), Query Frame = 1
Query:   19 QLVLRLPDGLKETMRERVAADAGMEGVDFTPEKKGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDGNASGVGPQRLY------PDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVLKM 456
            Q +LR+P  + E +R+++A +  + GVD       +R F F +D  + PA L  +PC++ET KT D++ F+KSGD+GQ+L+V+                  Q LY      P G+TPPT NIV+R++ K R     F +A+V RVE  ++K+
Sbjct:    4 QYLLRVPKRVGEELRKKMA-EKEVRGVDVVAGAD-NRNFKFRIDDTELPATLCQLPCIVETHKTYDEKLFYKSGDIGQILLVHDTPEE-------------QMLYETVTELPGGITPPTTNIVKRKYAKTRKS-PIFPKADVARVEDTLVKI 139          
BLAST of mRNA_Ecto-sp13_S_contig16446.4647.1 vs. uniprot
Match: A0A397VEC4_9GLOM (TAFII55 protein conserved region-domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397VEC4_9GLOM)

HSP 1 Score: 90.5 bits (223), Expect = 1.110e-16
Identity = 56/134 (41.79%), Postives = 74/134 (55.22%), Query Frame = 1
Query:   19 QLVLRL--PDGLKETMRERVAADAGMEGVDFTPEK-----KGSRRFTFTMDGKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYK----DENAYKKDDGNASGVGPQRLYPDGLTPPTKNIVRRRFVK 387
            Q +LRL  P+ +K+  RE+V          F PE      K SRR  FT + +KY ARLVD+PC++E QKT + + F+K  D+ QMLIV       E  +   +  AS    Q  +PDGLTPP KN+  RRF K
Sbjct:   91 QFILRLMVPEDVKQRFREKVRRQK------FAPEDVEIMFKDSRRAIFTFENQKYSARLVDLPCIIEAQKTFNNKQFYKVADICQMLIVESPIDTQEEVHMFTENMASSSIDQFEWPDGLTPPLKNVRNRRFRK 218          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16446.4647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G280_ECTSI1.630e-15297.08TAFII55_N domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YLK6_9STRA2.380e-5338.74TAFII55 protein conserved region-domain-containing... [more]
A0A7S2RHU4_9STRA2.900e-2038.22Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
A0A397DDH0_9STRA1.580e-1836.18TAFII55_N domain-containing protein n=2 Tax=Aphano... [more]
A0A2V3IJD7_9FLOR4.250e-1838.00Transcription initiation factor TFIID subunit 7 n=... [more]
A0A8J2T034_9STRA7.280e-1839.44Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A1V9ZGC5_9STRA3.250e-1734.38TAFII55_N domain-containing protein (Fragment) n=1... [more]
A0A7S3JUW2_9STRA4.530e-1739.86Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
W4GBL9_9STRA6.080e-1736.18TAFII55_N domain-containing protein n=5 Tax=Aphano... [more]
A0A397VEC4_9GLOM1.110e-1641.79TAFII55 protein conserved region-domain-containing... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16446contigEcto-sp13_S_contig16446:598..3353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score445.7
Seed ortholog evalue1.8e-122
Seed eggNOG ortholog2880.D7G280
Preferred nameTAF7
Model size924
KEGG koko:K03132,ko:K19721
KEGG Pathwayko03022,ko04974,map03022,map04974
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000122,GO:0000123,GO:0000296,GO:0000428,GO:0001067,GO:0001932,GO:0001933,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003712,GO:0003713,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005737,GO:0005794,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006469,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006928,GO:0007154,GO:0007165,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009755,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0010646,GO:0012505,GO:0014070,GO:0015696,GO:0015846,GO:0015893,GO:0016043,GO:0016070,GO:0016591,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0030154,GO:0030234,GO:0030317,GO:0030518,GO:0030520,GO:0030522,GO:0030880,GO:0031056,GO:0031057,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032870,GO:0032991,GO:0033043,GO:0033044,GO:0033276,GO:0033673,GO:0033993,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0035034,GO:0035035,GO:0035065,GO:0035067,GO:0035097,GO:0035257,GO:0040011,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042809,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043401,GO:0043549,GO:0043933,GO:0044085,GO:0044087,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044665,GO:0044703,GO:0044798,GO:0045859,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0046966,GO:0046982,GO:0046983,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048583,GO:0048609,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051123,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051338,GO:0051348,GO:0051427,GO:0051674,GO:0051704,GO:0051716,GO:0055029,GO:0060255,GO:0060260,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070461,GO:0070887,GO:0070897,GO:0071310,GO:0071339,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0097722,GO:0098772,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901796,GO:1901983,GO:1901984,GO:1902275,GO:1902493,GO:1902494,GO:1902531,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905268,GO:1990234,GO:2000112,GO:2000113,GO:2000142,GO:2000756,GO:2000757,GO:2001141,GO:2001251
Exons5
EggNOG free text desc.chromosome segregation
EggNOG OGsCOG5414@1,KOG4011@2759
Cds size924
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko03021,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462864.7340114-CDS-Ecto-sp13_S_contig16446:597..7281681462864.7340114-CDS-Ecto-sp13_S_contig16446:597..728Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16446 598..728 +
1681462864.7455418-CDS-Ecto-sp13_S_contig16446:1051..11901681462864.7455418-CDS-Ecto-sp13_S_contig16446:1051..1190Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16446 1052..1190 +
1681462864.7553186-CDS-Ecto-sp13_S_contig16446:1610..17631681462864.7553186-CDS-Ecto-sp13_S_contig16446:1610..1763Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16446 1611..1763 +
1681462864.7656586-CDS-Ecto-sp13_S_contig16446:2428..27881681462864.7656586-CDS-Ecto-sp13_S_contig16446:2428..2788Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16446 2429..2788 +
1681462864.7757428-CDS-Ecto-sp13_S_contig16446:3212..33531681462864.7757428-CDS-Ecto-sp13_S_contig16446:3212..3353Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16446 3213..3353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16446.4647.1prot_Ecto-sp13_S_contig16446.4647.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16446 598..3353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16446.4647.1

>prot_Ecto-sp13_S_contig16446.4647.1 ID=prot_Ecto-sp13_S_contig16446.4647.1|Name=mRNA_Ecto-sp13_S_contig16446.4647.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=308bp
MSTAYRQLVLRLPDGLKETMRERVAADAGMEGVDFTPEKKGSRRFTFTMD
GKKYPARLVDMPCVLETQKTLDKRTFFKSGDVGQMLIVYKDENAYKKDDG
NASGVGPQRLYPDGLTPPTKNIVRRRFVKARPDRGKFDRAEVIRVESQVL
KMQQDVLEGPDRSRKAGSSGGGGITAGGGMSGSSSRGGSADASGGGSSSS
RSRTSRSSGGGGGSSGGGGGGGGEVDGDAVTFEHEEIVPFEPWMADPKFA
ALGRLEGITLEITGTTEKPEAGAAGATGGGGGGEGSTAPRLFGSELLYEH
PEILLAVV
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mRNA from alignment at Ecto-sp13_S_contig16446:598..3353+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16446.4647.1 ID=mRNA_Ecto-sp13_S_contig16446.4647.1|Name=mRNA_Ecto-sp13_S_contig16446.4647.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2756bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16446:598..3353+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCACGGCGTACCGCCAGCTGGTGCTGCGCCTACCGGACGGCCTGAA GGAGACGATGAGAGAAAGGGTGGCCGCGGACGCGGGGATGGAAGGGGTCG ACTTCACGCCGGAGAAGAAAGGGAGCAGAAGGTGGGGCGAGGGGGGGGGG GCTGCGCAGGTTATTTCCAACGGACGGCCCCACGGCAGGGTATGGGAGGG TAGAGCAGGGCAGGGCAGGGAGGGGTATACTCATAGCCATGCATGCCGTC GCCGTGAGACTGTTGGCCTCGCAGCCGAGACGGAGCACCAGCCAAACAAT AACTGCTGTGGCAGCTTCAATGTATCCTATTTGATGATGCGGTAGGTTTT GTTAGCGCGGGCGGTCTGTTTGTCCGCTCTTTACAACAAGAGTATTTTGG ATTTTTGTAAACGAAGGGTAATCCCGTCGAGCATCGTGGTCACCATTTCT ACAGGTTCACCTTCACCATGGATGGGAAGAAATACCCCGCCCGCTTGGTG GACATGCCGTGCGTACTAGAAACCCAGAAGACCTTGGACAAGAGGACCTT CTTCAAGAGCGGGGACGTCGGCCAGATGCTCATCGTCTACAAGGTGTGTC TCCCGTTTCTGGTCAGAGATCTCTCTGATGCCCTCGCTATCCACTGCTGT TAGTACGTCCGTGAAGCCGTAGGAGGACAAGGAAGACACAATAAAATGGG GTTGTTTTAGCACGTGGTTAGAATGACTCGGGGCATGTTTCCCGACCCCT CTCCGTTCATGACGCTACTCGCCGAACACCTCACGGCGCTCAACGCTTGG CGCAATCCGTCCTTGCCTGATCGCGGAACCACGACTAGCGATACACGTCC CTTAGTTCTTGTTCCCACGAGAGCCACAAGCACCACCAACATTGGGTTTG CCCCCCCCCCCTCCCCCCCCCTCCACATTTGAGTGTCCCCGCCTCACCCC TCAGCCACAGTTTTTATGATCCCCCCTGTCCTCTCTCGCGTTGATTTTCC GTACCCCCCCCAGGACGAGAACGCCTACAAGAAGGACGACGGGAACGCTT CCGGGGTCGGCCCGCAGCGCCTGTACCCGGATGGCCTGACCCCTCCCACC AAGAACATCGTAAGGAGGCGTTTCGTCAAGGCCCGGCCGGACAGGGGGAA GTTCGACCGAGCGGAGGTGCGAGCTGGGTTAGTGGTCGTGACGATGACGA CAGCGATGATGATGATGATGATGATGATGATGATGACAGCGATTTGGTTG TACGGTCGACCCCGCTCTAAGGACACCCATGTTGTTTTCCTTTTTCAAAG TGAACTTCTCGCGGGAAAGGGTCCTCAAGGCGGGTACCCCCCCCTCTATC TTGTGCATCTTGCGGGCACCCTGCTTCTGAGATTTGTTTCTGTCCTTAAA GCTGGGAATTGACTTAAGACGAGTGCCCTTATAGAGGGGACGACTGTAGT AGCAACGAATGAAGCGCGCACCGAGAGACACGAGAAATATCCCAAGCGAT GGAGGACAGTGTTTGGCACTTGGTTCCCACACCACAGGGGGGAGTGTGCA TTGGCCGCGTGAAACAGCTCCTATCATGACGTCAAGAAGTAGTGATTGTC TGCGTGGGTTGGTGCGCGAGGGGAGACGGCGCGAGGTGCAGGGCCTCGTG GTTGAGCCGCGTGGCGAGGAGATTGTGGGCCCGTCACACATGACAGCCAA CCTAGGATGTTTCCACCCGAGAAGGCGCAGCAAGGGGGAGGGTCAGCAGG CCTTATTCCGTGATCGACACACGCACCGGCAGCCCTGACAGACCTCCCAC CGCGACCCTCCCTTGCTTTCCGATAAAACAGGTAATTCGCGTGGAAAGCC AGGTGCTGAAGATGCAGCAGGATGTCCTCGAAGGCCCCGACAGGAGCAGG AAGGCAGGCTCAAGCGGAGGCGGAGGAATCACCGCGGGAGGGGGAATGTC GGGGAGTTCTTCGCGAGGGGGCTCCGCGGACGCGAGTGGGGGGGGTAGCA GCTCTTCGCGAAGTCGCACCTCGAGAAGTAGCGGGGGTGGTGGCGGCAGC AGCGGCGGCGGCGGGGGAGGCGGTGGCGAGGTCGACGGCGATGCCGTTAC CTTCGAGCACGAAGAGATCGTACCTTTCGAGCCGTGGATGGCCGACCCGA AGTTTGCCGCCCTAGGGCGCCTTGAAGGCATAACGCTCGAGGTGCCCCGT TTTTTCTTACTAATGTCTTTGGTGGAGAGATAACTCGGACATGCCTTTTC TACGTTATTTGAGTAGAGACACAAGTACAGAACACCAAAACGCTAAGCCG CTGTGGCCCTGTTTAGCTTTGTTTTTTGTCCGGGGATGCTCCCTTCAGAT ACTTGCGTCAAAAAGGGACGATCAATCAATACTCCAAGAACTCTGGGGCG ATCAAATGAAGAAAACGCCTCAGTCGACGTCGGCTAACTCATTGCCCACC CCGATGCAGCAGCAGCAACCGAGCACTGCCCCCCGTCCCTATCCGCAACC TGTATCGACCATCCCCCTTCGTCCTCTCGAGGACGCGTGGTTAATGGCCT AACCGCTTGGACATCTTTAACATGAGTTCCCCCCCCCCCCTCCCCCCCGC CGCCCGGGTTGTTAGATCACCGGAACGACGGAGAAGCCCGAGGCAGGCGC GGCTGGGGCGACCGGTGGCGGCGGCGGCGGGGAGGGGTCGACGGCACCGC GGCTCTTCGGCTCCGAGCTTCTCTACGAACACCCGGAGATCCTCCTCGCT GTGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16446:598..3353+

>mRNA_Ecto-sp13_S_contig16446.4647.1 ID=mRNA_Ecto-sp13_S_contig16446.4647.1|Name=mRNA_Ecto-sp13_S_contig16446.4647.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=924bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16446:598..3353+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCACGGCGTACCGCCAGCTGGTGCTGCGCCTACCGGACGGCCTGAA
GGAGACGATGAGAGAAAGGGTGGCCGCGGACGCGGGGATGGAAGGGGTCG
ACTTCACGCCGGAGAAGAAAGGGAGCAGAAGGTTCACCTTCACCATGGAT
GGGAAGAAATACCCCGCCCGCTTGGTGGACATGCCGTGCGTACTAGAAAC
CCAGAAGACCTTGGACAAGAGGACCTTCTTCAAGAGCGGGGACGTCGGCC
AGATGCTCATCGTCTACAAGGACGAGAACGCCTACAAGAAGGACGACGGG
AACGCTTCCGGGGTCGGCCCGCAGCGCCTGTACCCGGATGGCCTGACCCC
TCCCACCAAGAACATCGTAAGGAGGCGTTTCGTCAAGGCCCGGCCGGACA
GGGGGAAGTTCGACCGAGCGGAGGTAATTCGCGTGGAAAGCCAGGTGCTG
AAGATGCAGCAGGATGTCCTCGAAGGCCCCGACAGGAGCAGGAAGGCAGG
CTCAAGCGGAGGCGGAGGAATCACCGCGGGAGGGGGAATGTCGGGGAGTT
CTTCGCGAGGGGGCTCCGCGGACGCGAGTGGGGGGGGTAGCAGCTCTTCG
CGAAGTCGCACCTCGAGAAGTAGCGGGGGTGGTGGCGGCAGCAGCGGCGG
CGGCGGGGGAGGCGGTGGCGAGGTCGACGGCGATGCCGTTACCTTCGAGC
ACGAAGAGATCGTACCTTTCGAGCCGTGGATGGCCGACCCGAAGTTTGCC
GCCCTAGGGCGCCTTGAAGGCATAACGCTCGAGATCACCGGAACGACGGA
GAAGCCCGAGGCAGGCGCGGCTGGGGCGACCGGTGGCGGCGGCGGCGGGG
AGGGGTCGACGGCACCGCGGCTCTTCGGCTCCGAGCTTCTCTACGAACAC
CCGGAGATCCTCCTCGCTGTGGTA
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