prot_Ecto-sp13_S_contig16441.4645.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16441.4645.1
Unique Nameprot_Ecto-sp13_S_contig16441.4645.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length102
Homology
BLAST of mRNA_Ecto-sp13_S_contig16441.4645.1 vs. uniprot
Match: D7G468_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G468_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 4.230e-53
Identity = 93/101 (92.08%), Postives = 95/101 (94.06%), Query Frame = 0
Query:    1 MRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAKVRQGRAYRRKADQKTVDAGVLAAMTNPMLKAYLNAKFSLKKGDRPHEMIF 101
            MRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAK     + +RKADQKTVDAGVLAAMTNPMLKAYLNAKFSLKKGDRPHEMIF
Sbjct:   80 MRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAKSSTV-SDKRKADQKTVDAGVLAAMTNPMLKAYLNAKFSLKKGDRPHEMIF 179          
BLAST of mRNA_Ecto-sp13_S_contig16441.4645.1 vs. uniprot
Match: A0A835YT51_9STRA (60S ribosomal protein L6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT51_9STRA)

HSP 1 Score: 104 bits (259), Expect = 4.750e-26
Identity = 59/102 (57.84%), Postives = 73/102 (71.57%), Query Frame = 0
Query:    1 MRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAKVRQGRAYRRKADQKTVDAGVLAAMT-NPMLKAYLNAKFSLKKGDRPHEMIF 101
            +RRVNQAYVIATS  +DVSKV + A DD+YF R   A KT ED FF Q +K     + ++K DQ  VDA +LA ++ + +LKAYLNAKFSL K DRPHEM+F
Sbjct:   85 LRRVNQAYVIATSTKLDVSKVDVSAIDDAYFARAPEAKKTAEDAFFAQASK-ESVVSDQKKKDQDVVDASILAGLSKDKLLKAYLNAKFSLTKKDRPHEMVF 185          
BLAST of mRNA_Ecto-sp13_S_contig16441.4645.1 vs. uniprot
Match: A0A7S4V8G6_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4V8G6_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 7.260e-24
Identity = 55/102 (53.92%), Postives = 71/102 (69.61%), Query Frame = 0
Query:    1 MRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAKVRQGRAYRRKADQKTVDAGVLAAMTN-PMLKAYLNAKFSLKKGDRPHEMIF 101
            +RRV+QAYVIAT+ +VDVS + + A DD+YF R   + +  ED+FF   A      +  RKADQK VDA +L A+   PMLK YLNAKFSL KGD+PH+M+F
Sbjct:  121 LRRVHQAYVIATTTTVDVSAIDVSAIDDAYFARAASSGEEGEDEFFANDAAKPAVVSETRKADQKKVDAALLKAVEAVPMLKQYLNAKFSLSKGDKPHKMVF 222          
BLAST of mRNA_Ecto-sp13_S_contig16441.4645.1 vs. uniprot
Match: A0A7S1U5W8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5W8_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.120e-23
Identity = 57/104 (54.81%), Postives = 76/104 (73.08%), Query Frame = 0
Query:    1 MRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFF--EQGAKVRQGRAYRRKADQKTVDAGVLAAMTN-PMLKAYLNAKFSLKKGDRPHEMIF 101
            +RRVNQAYVIATS+ VD++ V++P  DD +F RE+  +KTDE+QFF  E  A V    +  RK  QK VDAG+LAA+   P+L+AYL A+FSL+ GD+PH+M F
Sbjct:  140 LRRVNQAYVIATSVVVDLAGVSLPDIDDEFFAREKKESKTDEEQFFSNEPTATVV---SQARKDAQKAVDAGILAAVKKVPLLQAYLGARFSLRNGDKPHKMKF 240          
BLAST of mRNA_Ecto-sp13_S_contig16441.4645.1 vs. uniprot
Match: B8CBR7_THAPS (60S ribosomal protein L6 (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBR7_THAPS)

HSP 1 Score: 94.0 bits (232), Expect = 4.620e-22
Identity = 53/102 (51.96%), Postives = 68/102 (66.67%), Query Frame = 0
Query:    1 MRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAKVRQGRAYRRKADQKTVDAGVLAAM-TNPMLKAYLNAKFSLKKGDRPHEMIF 101
            +RRVNQAYVIATS  VDVS   +   DD+YF R +  +   E++FF   A      + +RKADQK VDA +L A+ + P++K YL + FSLKK DRPHEMIF
Sbjct:   77 LRRVNQAYVIATSTKVDVSGADVSKIDDAYFARVKSDSAEGEEEFFANDAAKPAVVSDQRKADQKKVDAAILKAVESTPLMKNYLGSNFSLKKHDRPHEMIF 178          
BLAST of mRNA_Ecto-sp13_S_contig16441.4645.1 vs. uniprot
Match: G7J9R6_MEDTR (60S ribosomal L6-like protein n=6 Tax=Trifolieae TaxID=163742 RepID=G7J9R6_MEDTR)

HSP 1 Score: 94.0 bits (232), Expect = 1.580e-21
Identity = 52/103 (50.49%), Postives = 70/103 (67.96%), Query Frame = 0
Query:    1 MRRVNQAYVIATSMSVDVSKVTIPAADDSYFTRE-EVATKTDEDQFFEQGAKVRQGRAYRRKADQKTVDAGVLAAMTN-PMLKAYLNAKFSLKKGDRPHEMIF 101
            +RRVNQAYVI TS  VD+S V +   DD YF++E +  TK  E +FFE   + ++     +K DQKTVDAG+L A+ + P LK YL A+FSLK G +PHE++F
Sbjct:  131 LRRVNQAYVIGTSTKVDISSVNVDKFDDKYFSKESQKKTKKGESEFFEADKEDKKVLPQEKKDDQKTVDAGLLKAIDSVPDLKTYLGARFSLKAGVKPHELVF 233          
BLAST of mRNA_Ecto-sp13_S_contig16441.4645.1 vs. uniprot
Match: F6HLL3_VITVI (60S ribosomal protein L6 n=2 Tax=Vitis vinifera TaxID=29760 RepID=F6HLL3_VITVI)

HSP 1 Score: 93.6 bits (231), Expect = 2.130e-21
Identity = 50/102 (49.02%), Postives = 67/102 (65.69%), Query Frame = 0
Query:    1 MRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGAKVRQGRAYRRKADQKTVDAGVLAAMTN-PMLKAYLNAKFSLKKGDRPHEMIF 101
            +RRVNQAYVIATS  VD+SKV +   DD YF +E    K  E +FFE   + ++     +K DQK VDA ++A++   P LK YL A+FSLK G +PHE++F
Sbjct:  130 LRRVNQAYVIATSTKVDISKVNVEKFDDKYFAKEVQKKKKGEGEFFEAEKEEKKDLPQEKKDDQKAVDASLIASIEGVPELKVYLAARFSLKSGMKPHELVF 231          
BLAST of mRNA_Ecto-sp13_S_contig16441.4645.1 vs. uniprot
Match: A0A2G2ZW24_CAPAN (60S ribosomal protein L6 n=1 Tax=Capsicum annuum TaxID=4072 RepID=A0A2G2ZW24_CAPAN)

HSP 1 Score: 90.1 bits (222), Expect = 8.140e-21
Identity = 52/103 (50.49%), Postives = 69/103 (66.99%), Query Frame = 0
Query:    1 MRRVNQAYVIATSMSVDVSKVTIPAADDSYFTRE-EVATKTDEDQFFEQGAKVRQGRAYRRKADQKTVDAGVLAAMTN-PMLKAYLNAKFSLKKGDRPHEMIF 101
            +RRVNQAYVIATS  VDVS+V +   DD YF++E E   +  E +FFE+  + +      +K DQK VDA +L A+   P LKAYL+A+FSLK G +PHE +F
Sbjct:   52 LRRVNQAYVIATSTKVDVSRVNVDKIDDKYFSKEVEKKVEKGEGEFFEEKKEEKNVLPQEKKDDQKAVDAVLLKAIECVPELKAYLSARFSLKSGMKPHEFVF 154          
BLAST of mRNA_Ecto-sp13_S_contig16441.4645.1 vs. uniprot
Match: A0A2G3BWK5_CAPCH (60S ribosomal protein L6 n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3BWK5_CAPCH)

HSP 1 Score: 89.0 bits (219), Expect = 1.060e-20
Identity = 52/102 (50.98%), Postives = 68/102 (66.67%), Query Frame = 0
Query:    2 RRVNQAYVIATSMSVDVSKVTIPAADDSYFTRE-EVATKTDEDQFFEQGAKVRQGRAYRRKADQKTVDAGVLAAMTN-PMLKAYLNAKFSLKKGDRPHEMIF 101
            RRVNQAYVIATS  VDVS+V +   DD YF++E E   +  E +FFE+  + +      +K DQK VDA +L A+   P LKAYL+A+FSLK G +PHE +F
Sbjct:   23 RRVNQAYVIATSTKVDVSRVNVDKIDDKYFSKEVEKKVEKGEGEFFEEKKEEKNVVPQEKKDDQKAVDAVLLKAIKCVPELKAYLSARFSLKSGMKPHEFVF 124          
BLAST of mRNA_Ecto-sp13_S_contig16441.4645.1 vs. uniprot
Match: A0A2G2Y4M8_CAPAN (60S ribosomal protein L6 n=6 Tax=Capsicum TaxID=4071 RepID=A0A2G2Y4M8_CAPAN)

HSP 1 Score: 92.4 bits (228), Expect = 1.100e-20
Identity = 53/103 (51.46%), Postives = 68/103 (66.02%), Query Frame = 0
Query:    1 MRRVNQAYVIATSMSVDVSKVTIPAADDSYFTRE-EVATKTDEDQFFEQGAKVRQGRAYRRKADQKTVDAGVLAAMTN-PMLKAYLNAKFSLKKGDRPHEMIF 101
            +RRVNQAYVIATS  VDVS V +   DD YF +E E   K  E +FFE+  + +      +K DQK VDA +L A+ + P LKAYL A+FSLK G +PHE++F
Sbjct:  162 LRRVNQAYVIATSTKVDVSGVNVDKIDDKYFAKEVEKKVKKGEGEFFEEKKEEKNVIPQEKKDDQKAVDAALLKAIESVPELKAYLGARFSLKSGMKPHELVF 264          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16441.4645.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G468_ECTSI4.230e-5392.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YT51_9STRA4.750e-2657.8460S ribosomal protein L6 n=1 Tax=Tribonema minus T... [more]
A0A7S4V8G6_9STRA7.260e-2453.92Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1U5W8_9STRA2.120e-2354.81Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
B8CBR7_THAPS4.620e-2251.9660S ribosomal protein L6 (Fragment) n=1 Tax=Thalas... [more]
G7J9R6_MEDTR1.580e-2150.4960S ribosomal L6-like protein n=6 Tax=Trifolieae T... [more]
F6HLL3_VITVI2.130e-2149.0260S ribosomal protein L6 n=2 Tax=Vitis vinifera Ta... [more]
A0A2G2ZW24_CAPAN8.140e-2150.4960S ribosomal protein L6 n=1 Tax=Capsicum annuum T... [more]
A0A2G3BWK5_CAPCH1.060e-2050.9860S ribosomal protein L6 n=1 Tax=Capsicum chinense... [more]
A0A2G2Y4M8_CAPAN1.100e-2051.4660S ribosomal protein L6 n=6 Tax=Capsicum TaxID=40... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR00091560S ribosomal protein L6EPFAMPF01159Ribosomal_L6ecoord: 1..101
e-value: 3.5E-29
score: 101.6
IPR00091560S ribosomal protein L6EPANTHERPTHR1071560S RIBOSOMAL PROTEIN L6coord: 1..101
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 2..48

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16441contigEcto-sp13_S_contig16441:1027..2270 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16441.4645.1mRNA_Ecto-sp13_S_contig16441.4645.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16441 1027..2270 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16441.4645.1 ID=prot_Ecto-sp13_S_contig16441.4645.1|Name=mRNA_Ecto-sp13_S_contig16441.4645.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
MRRVNQAYVIATSMSVDVSKVTIPAADDSYFTREEVATKTDEDQFFEQGA
KVRQGRAYRRKADQKTVDAGVLAAMTNPMLKAYLNAKFSLKKGDRPHEMI
F*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR00091560S_ribosomal_L6E
IPR008991Translation_prot_SH3-like_sf