mRNA_Ecto-sp13_S_contig16430.4638.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16430.4638.1
Unique NamemRNA_Ecto-sp13_S_contig16430.4638.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16430.4638.1 vs. uniprot
Match: D8LJG1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG1_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 1.030e-64
Identity = 114/137 (83.21%), Postives = 119/137 (86.86%), Query Frame = 1 
Query:    1 LTQVMGGNRKVVRRLELEEKKGVLKWEVDALFGMKWERVKLSEARVVSNASLVKIGVVGKSDFFSFKACDDLEAGAVCKALVARANKHKVHGGDDVGASEADK*ASKVEDGGKKPEALPRKRSAGETAVTAAETLAS 411
            LTQVM GNRKVVRRLELE+KKGVLKWEVDALFGMKWE+VKL EARV+S  SLVKIGVVGKS+FFSF+ACDDLEAGAVCK LVA A KHK  G DD GASEADK A KVEDG KK E LPRK SAGETA TAAETLAS
Sbjct:  174 LTQVMRGNRKVVRRLELEKKKGVLKWEVDALFGMKWEKVKLPEARVMSTGSLVKIGVVGKSEFFSFEACDDLEAGAVCKTLVAHAMKHKEPGSDDGGASEADKEAQKVEDGAKKEETLPRKGSAGETAATAAETLAS 310
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BLAST of mRNA_Ecto-sp13_S_contig16430.4638.1 vs. uniprot
Match: A0A6H5KED6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KED6_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 4.140e-51
Identity = 88/102 (86.27%), Postives = 94/102 (92.16%), Query Frame = 1 
Query:    1 LTQVMGGNRKVVRRLELEEKKGVLKWEVDALFGMKWERVKLSEARVVSNASLVKIGVVGKSDFFSFKACDDLEAGAVCKALVARANKHKVHGGDDVGASEAD 306
            LTQV  GNR+VVRRLELEEKKGVLKWEVDALFGMKWE+VKL EARV+S+ +LVKIGVVGKSDFFSFKACDD+EAGAVCKALVARA KHKVHG D  GASEAD
Sbjct:  160 LTQVTWGNREVVRRLELEEKKGVLKWEVDALFGMKWEKVKLPEARVMSDGNLVKIGVVGKSDFFSFKACDDVEAGAVCKALVARAKKHKVHGSDYGGASEAD 261
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16430.4638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJG1_ECTSI1.030e-6483.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KED6_9PHAE4.140e-5186.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16430contigEcto-sp13_S_contig16430:81..1140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size411
Hectar predicted targeting categoryother localisation
Exons2
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462864.179481-UTR-Ecto-sp13_S_contig16430:80..921681462864.179481-UTR-Ecto-sp13_S_contig16430:80..92Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16430 81..92 +
1681462864.2116127-UTR-Ecto-sp13_S_contig16430:1041..11401681462864.2116127-UTR-Ecto-sp13_S_contig16430:1041..1140Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16430 1042..1140 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462864.1881459-CDS-Ecto-sp13_S_contig16430:92..2151681462864.1881459-CDS-Ecto-sp13_S_contig16430:92..215Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16430 93..215 +
1681462864.1979213-CDS-Ecto-sp13_S_contig16430:864..10411681462864.1979213-CDS-Ecto-sp13_S_contig16430:864..1041Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16430 865..1041 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16430.4638.1prot_Ecto-sp13_S_contig16430.4638.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16430 93..1041 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16430.4638.1

>prot_Ecto-sp13_S_contig16430.4638.1 ID=prot_Ecto-sp13_S_contig16430.4638.1|Name=mRNA_Ecto-sp13_S_contig16430.4638.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MGGNRKVVRRLELEEKKGVLKWEVDALFGMKWERVKLSEARVVSNASLVK
IGVVGKSDFFSFKACDDLEAGAVCKALVARANKHKVHGGDDVGASEADK*
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mRNA from alignment at Ecto-sp13_S_contig16430:81..1140+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16430.4638.1 ID=mRNA_Ecto-sp13_S_contig16430.4638.1|Name=mRNA_Ecto-sp13_S_contig16430.4638.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1060bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16430:81..1140+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTACCCAGGTGATGGGGGGAAACAGGAAGGTTGTCCGGCGGCTAGAACT
TGAGGAAAAGAAGGGGGTTCTCAAGTGGGAAGTGGATGCGCTCTTCGGCA
TGAAGTGGGAGAGGGTCAAGCTCTCGGAGGCTAGGGTGAGAACGAAAGAG
AAACTTGGGGACAATTTTGTTGTGCTGGCGAGAGTTGCCGAATCAGTTCG
TCGAGTGCCAGCAGTTGACATAATATGTAAACAAATGTGCTATGCTCACA
AGTATCGCCAAGTCAATGCAGCGAAGTGGTAGCACCTGACTTAGTACATA
CTACATGTGTGCCAAATTTGAGATGCCGAGTCAGTGCAGCGAGTGGTAGC
TGTTGGTGCGGTGGCTTGCCTTGATGGCATTGCTAGTATTTTGGTGGCAA
AAGCGTGCCCTCGAGGTGTCGTTGTTGGCGATGGTGAGTATAGGACAACC
CGCAGCAGAGTGTCTTCCACACGCAAGACACTCGAACTGCCTTCCTGACA
GTCACGGATTGGAACACGCCTGCACATGATCCTGTATCACACCCACACAG
AGCTTAGCAAGGCGCGTAAGGTGCTCTCCCTTGTCGTCTGGGTTTATCCA
AAGTAGATGTCTGGCGTGGGCGGGTCGATGTTTTCGGTGCGCACCCACCC
TTTCAGAGCAGGTTGCCATCGCTGAACGCAACCGTCATATCTTTCTGTAT
CAGAGAGGAGACCATATCATCTGTCGTCAATGCTCACCGTGGCTACTCGC
TCACCGTGACCCGACCCCCCTCCCCCCGTCGAAGGTGGTGTCAAACGCTA
GCCTGGTGAAGATCGGTGTTGTCGGCAAGAGCGATTTCTTTTCGTTCAAG
GCCTGCGACGACCTGGAAGCAGGGGCCGTCTGCAAGGCTCTCGTCGCCCG
CGCCAATAAGCACAAGGTTCACGGCGGCGATGACGTAGGGGCTAGCGAAG
CCGACAAGTAAGCCTCAAAAGTTGAGGACGGGGGAAAGAAGCCGGAGGCC
TTGCCCCGAAAGAGATCTGCTGGGGAGACCGCGGTCACGGCTGCCGAGAC
TTTGGCTTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16430:81..1140+

>mRNA_Ecto-sp13_S_contig16430.4638.1 ID=mRNA_Ecto-sp13_S_contig16430.4638.1|Name=mRNA_Ecto-sp13_S_contig16430.4638.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16430:81..1140+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGGAAACAGGAAGGTTGTCCGGCGGCTAGAACTTGAGGAAAAGAA
GGGGGTTCTCAAGTGGGAAGTGGATGCGCTCTTCGGCATGAAGTGGGAGA
GGGTCAAGCTCTCGGAGGCTAGGGTGGTGTCAAACGCTAGCCTGGTGAAG
ATCGGTGTTGTCGGCAAGAGCGATTTCTTTTCGTTCAAGGCCTGCGACGA
CCTGGAAGCAGGGGCCGTCTGCAAGGCTCTCGTCGCCCGCGCCAATAAGC
ACAAGGTTCACGGCGGCGATGACGTAGGGGCTAGCGAAGCCGACAAGTAA
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