mRNA_Ecto-sp13_S_contig16424.4634.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16424.4634.1
Unique NamemRNA_Ecto-sp13_S_contig16424.4634.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16424.4634.1 vs. uniprot
Match: D7G5M9_ECTSI (STI1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5M9_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 8.630e-15
Identity = 57/72 (79.17%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:    1 MGGAGGAVXXXXXXXXXXXXXXXMGDMIGKMMNNPKAMEAFQKAQSNPK--ASFFGVFQNGMSAMSKYPDDP 210
            MGG  GA XXXXXXXXXXXXXXX  DMIGKMMNNPKAMEAFQKAQSN    A+   V QNGMSAMSKY DDP
Sbjct:    1 MGGTSGAXXXXXXXXXXXXXXXXXXDMIGKMMNNPKAMEAFQKAQSNXXVMAAIQDVTQNGMSAMSKYQDDP 72
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BLAST of mRNA_Ecto-sp13_S_contig16424.4634.1 vs. uniprot
Match: D7G4D5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D5_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 2.590e-12
Identity = 37/47 (78.72%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:   76 DMIGKMMNNPKAMEAFQKAQSNPK--ASFFGVFQNGMSAMSKYPDDP 210
            DMIGKMMNNPKAMEAFQKAQSN    A+   V QNGMSAMSKY DDP
Sbjct:  828 DMIGKMMNNPKAMEAFQKAQSNXXVMAAIQDVTQNGMSAMSKYQDDP 874
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16424.4634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5M9_ECTSI8.630e-1579.17STI1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G4D5_ECTSI2.590e-1278.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16424contigEcto-sp13_S_contig16424:3035..3655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score72.0
Seed ortholog evalue1.5e-10
Seed eggNOG ortholog2880.D7G5M9
Model size250
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs2CYJN@1,2S4TD@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_009040.1
Cds size249
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462863.9669423-CDS-Ecto-sp13_S_contig16424:3034..31121681462863.9669423-CDS-Ecto-sp13_S_contig16424:3034..3112Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16424 3035..3112 -
1681462863.9783168-CDS-Ecto-sp13_S_contig16424:3484..36551681462863.9783168-CDS-Ecto-sp13_S_contig16424:3484..3655Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16424 3485..3655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16424.4634.1prot_Ecto-sp13_S_contig16424.4634.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16424 3035..3655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16424.4634.1

>prot_Ecto-sp13_S_contig16424.4634.1 ID=prot_Ecto-sp13_S_contig16424.4634.1|Name=mRNA_Ecto-sp13_S_contig16424.4634.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=83bp
MGGAGGAVGGGAPGGGAGGGMGGMGDMIGKMMNNPKAMEAFQKAQSNPKA
SFFGVFQNGMSAMSKYPDDPRDPGDHRGAQGLV
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mRNA from alignment at Ecto-sp13_S_contig16424:3035..3655-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16424.4634.1 ID=mRNA_Ecto-sp13_S_contig16424.4634.1|Name=mRNA_Ecto-sp13_S_contig16424.4634.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=621bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16424:3035..3655- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGGAGCAGGCGGTGCAGTGGGGGGCGGTGCGCCAGGAGGAGGGGC
GGGCGGAGGGATGGGAGGCATGGGTGACATGATCGGGAAGATGATGAACA
ACCCGAAGGCCATGGAGGCGTTCCAGAAGGCGCAGAGCAATCCGAAGGCA
AGCTTTTTTGGTGTGTTTCAGGTTGACGACACGAGGTCTTGGTTGTCTTG
CGAGAGAGAGAGAGAAATTGGGTTGGCTCACCGTGCACCCGCCTTCCCCC
AGGCGTAGGGCATGACCATGTATTGGTACTACCCTCTTCCGTTGATCAGA
TTCGCGATGACACTGTATGTTGAGGGGGTTACACGATTGTGGGAAAGGGG
GACTGAAAATGCGGTGATAACTCTTGATGATCCGCATACCGCGACATGTT
CCCTTGTCCCTCCCCGTGCATTCCAAATGTGGCAACCATTTTTTGTTGTT
GTTGCGTGTTTCCTCTACTCCTTTTTTGATATCCTGGTGCCGCTTGTACG
CGACGGCACGAAGGTCATGGCCGCAATCCAAGACGTTACCTAGAACGGCA
TGAGCGCCATGTCCAAGTACCCAGACGACCCCCGAGATCCTGGCGATCAT
CGTGGAGCTCAAGGGCTTGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16424:3035..3655-

>mRNA_Ecto-sp13_S_contig16424.4634.1 ID=mRNA_Ecto-sp13_S_contig16424.4634.1|Name=mRNA_Ecto-sp13_S_contig16424.4634.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=249bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16424:3035..3655- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGGAGCAGGCGGTGCAGTGGGGGGCGGTGCGCCAGGAGGAGGGGC
GGGCGGAGGGATGGGAGGCATGGGTGACATGATCGGGAAGATGATGAACA
ACCCGAAGGCCATGGAGGCGTTCCAGAAGGCGCAGAGCAATCCGAAGGCA
AGCTTTTTTGGTGTGTTTCAGAACGGCATGAGCGCCATGTCCAAGTACCC
AGACGACCCCCGAGATCCTGGCGATCATCGTGGAGCTCAAGGGCTTGTT
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