mRNA_Ecto-sp13_S_contig16417.4631.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16417.4631.1
Unique NamemRNA_Ecto-sp13_S_contig16417.4631.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16417.4631.1 vs. uniprot
Match: A0A6H5KTD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD4_9PHAE)

HSP 1 Score: 314 bits (805), Expect = 1.310e-102
Identity = 157/159 (98.74%), Postives = 157/159 (98.74%), Query Frame = 2 
Query:  470 EKNGGVLKLELGAVGVFKGTAEFSDNSIISTSIDESTEEEILRKGGAIHTKGSLTFEKDATFSGNLNDRLYYGSGPGGAISVHGKGSIYFMGKLTMTDNEADDYFGGAQGGAIFNRGDIVVDGEAEFTGNIGGSGGAIFQEKWATLVFNDFVTFTSNKC 946
            EKNGGVLKLELGAVGVFKGTAEFSDNSIISTSIDESTEEEILRKGGAIHTKGSLTFEKDATFSGNLNDRLYYGSGPGGAISVH KGSIYFMGKLTMTDNEADDYFGGAQGGAIFNRGDIVVDGEAEFTGNIGG GGAIFQEKWATLVFNDFVTFTSNKC
Sbjct:  101 EKNGGVLKLELGAVGVFKGTAEFSDNSIISTSIDESTEEEILRKGGAIHTKGSLTFEKDATFSGNLNDRLYYGSGPGGAISVHVKGSIYFMGKLTMTDNEADDYFGGAQGGAIFNRGDIVVDGEAEFTGNIGGRGGAIFQEKWATLVFNDFVTFTSNKC 259
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BLAST of mRNA_Ecto-sp13_S_contig16417.4631.1 vs. uniprot
Match: D7FLJ6_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ6_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 2.110e-33
Identity = 83/170 (48.82%), Postives = 101/170 (59.41%), Query Frame = 2 
Query:  467 QEKNGGVLKLELGAVGVFKGTAEFSDNSIISTSI------DESTE-----EEILRKGGAIHTKGSLTFEKDATFSGN-LNDRLYYGSGPGGAISVHGKGSIYFMGKLTMTDNEADDYFGGAQGGAIFNRGDIVVDGEAEFTGNIGGSGGAIFQEKWATLVFNDFVTFTSN 940
            Q KNGGVL +  GA   F GT+EFSDNS+    I      D  T        I++KGGAIH KG+LTFE DATF  N ++       G  GAIS  G G+I F  KLTM DNEAD +F G  GGAI+NRG+IVV+GE+ F+ N    GG I+Q    T+ FN   TF+ N
Sbjct:   98 QVKNGGVLSVAEGATATFMGTSEFSDNSVAVKQIGPVSCGDGCTRIGRGLSYIVKKGGAIHNKGTLTFEGDATFERNEVHTEDSVEQGKAGAISNTGSGTILFKSKLTMKDNEADGFFEGI-GGAIYNRGEIVVEGESLFSLNTSSDGGGIYQTSIGTMTFNGAATFSEN 266
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BLAST of mRNA_Ecto-sp13_S_contig16417.4631.1 vs. uniprot
Match: D8LJ44_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ44_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 4.110e-33
Identity = 79/170 (46.47%), Postives = 102/170 (60.00%), Query Frame = 2 
Query:  467 QEKNGGVLKLELGAVGVFKGTAEFSDNSII-----STSIDESTEEE------ILRKGGAIHTKGSLTFEKDATFSGN-LNDRLYYGSGPGGAISVHGKGSIYFMGKLTMTDNEADDYFGGAQGGAIFNRGDIVVDGEAEFTGNIGGSGGAIFQEKWATLVFNDFVTFTSN 940
            Q KNGGVL +  GA   F GT+EFSDNS+      + S  +  E        +++KGGAIH KG+LTFE DATF  N ++       G  GAIS  G G+I+F  KLTM DNEA+ +F G  GGAI+NRG+I+VDGE+ F+ N    GG I+Q     + FN   TF+ N
Sbjct:   98 QVKNGGVLSVAEGATSTFMGTSEFSDNSVAVKQLGAVSCGDGCERTGRGLSYVVKKGGAIHNKGTLTFEGDATFERNAVHTEDSVEQGKAGAISNTGSGTIWFKSKLTMKDNEAEGFFEGL-GGAIYNRGEIIVDGESLFSLNTASDGGGIYQTPIGKMTFNSMATFSEN 266
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BLAST of mRNA_Ecto-sp13_S_contig16417.4631.1 vs. uniprot
Match: D7FL58_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL58_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 6.560e-25
Identity = 69/151 (45.70%), Postives = 89/151 (58.94%), Query Frame = 2 
Query:  524 GTAEFSDNSIISTSI------DESTEEE-----ILRKGGAIHTKGSLTFEKDATFSGNL-NDRLYYGSGPGGAISVHGKGSIYFMGKLTMTDNEADDYFGGAQGGAIFNRGDIVVDGEAEFTGNIGGSGGAIFQEKWATLVFNDFVTFTSN 940
            GT+EFS+NS+           D  T  E     I++KGGAIH KG+LTF+ DATF  N+ +       G GGAIS  G G+I F  KLTM DN+AD  F G  GGAI+NRG+I+V+G + F+ N   +GG I Q    T+ FN   TF+ N
Sbjct:    2 GTSEFSNNSVAVKQFGRISCGDGCTRSERGLTYIVKKGGAIHNKGTLTFDGDATFERNVAHTESSNQRGNGGAISNTGSGTILFKSKLTMKDNQADANFAGL-GGAIYNRGEIIVEGASLFSLNHAAAGGGIHQTSIGTMTFNGMATFSEN 151
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BLAST of mRNA_Ecto-sp13_S_contig16417.4631.1 vs. uniprot
Match: D7FQG1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG1_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 2.760e-5
Identity = 27/62 (43.55%), Postives = 37/62 (59.68%), Query Frame = 2 
Query:  755 MTDNEADDYFGGAQGGAIFNRGDIVVDGEAEFTGNIGGSGGAIFQEKWATLVFNDFVTFTSN 940
            M +N+ D  +GG  GGAI+NRG+I V+GE+ F+ N    GG I+Q     + FN   TF  N
Sbjct:    1 MNENDTDGQYGGL-GGAIYNRGEITVEGESLFSENRSSDGGGIYQTSIGIMTFNSMATFFHN 61
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16417.4631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KTD4_9PHAE1.310e-10298.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FLJ6_ECTSI2.110e-3348.82Asn/thr-rich large protein family protein n=1 Tax=... [more]
D8LJ44_ECTSI4.110e-3346.47Asn/thr-rich large protein family protein n=1 Tax=... [more]
D7FL58_ECTSI6.560e-2545.70Asn/thr-rich large protein family protein n=1 Tax=... [more]
D7FQG1_ECTSI2.760e-543.55Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16417contigEcto-sp13_S_contig16417:577..3291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size947
Hectar predicted targeting categoryother localisation
Exons4
Cds size207
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462863.7212398-UTR-Ecto-sp13_S_contig16417:576..11981681462863.7212398-UTR-Ecto-sp13_S_contig16417:576..1198Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16417 577..1198 +
1681462863.7300582-UTR-Ecto-sp13_S_contig16417:1739..18561681462863.7300582-UTR-Ecto-sp13_S_contig16417:1739..1856Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16417 1740..1856 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462863.7385085-CDS-Ecto-sp13_S_contig16417:1856..18921681462863.7385085-CDS-Ecto-sp13_S_contig16417:1856..1892Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16417 1857..1892 +
1681462863.7507987-CDS-Ecto-sp13_S_contig16417:2406..24991681462863.7507987-CDS-Ecto-sp13_S_contig16417:2406..2499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16417 2407..2499 +
1681462863.7605193-CDS-Ecto-sp13_S_contig16417:3213..32911681462863.7605193-CDS-Ecto-sp13_S_contig16417:3213..3291Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16417 3214..3291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16417.4631.1prot_Ecto-sp13_S_contig16417.4631.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16417 1857..3291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16417.4631.1

>prot_Ecto-sp13_S_contig16417.4631.1 ID=prot_Ecto-sp13_S_contig16417.4631.1|Name=mRNA_Ecto-sp13_S_contig16417.4631.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
MGKLTMTDNEADDYFGGAQGGAIFNRGDIVVDGEAEFTGNIGGSGGAIFQ
EKWATLVFNDFVTFTSNKC
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mRNA from alignment at Ecto-sp13_S_contig16417:577..3291+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16417.4631.1 ID=mRNA_Ecto-sp13_S_contig16417.4631.1|Name=mRNA_Ecto-sp13_S_contig16417.4631.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2715bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16417:577..3291+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGATGACAACTGCGTATGACTTTGTTGATTTTCTGGTGCTTTCACTTCCA
GAGACAGTTGGAAGCGCTGTGTAACTGCCTCGAGGGTGCTTGACCAACTC
AGCACAACGTGGTGTGATTATCCCCCTTGCGCGAAGTGAAGGTTCTCGAC
CCCGCACAACATAATATACTCCACCACCATTCATGATTACCGCAAAAAAA
AACAAAGGGAAATGCAACGTAAGGGAGGGAATTCTTGCTACACGTTACGG
CCCTCTTGCTCTTGTCGATGCGATTGTGTCCTCACAGCGTAGGAGTTGTG
GAATTTCTGTTCTTCCCCCTCTGTGTACCCCTGTGTGGTAACTGCAACCG
AGGCCGTTGAAAGGCTCCGTTTCGAAGCGGTACCAGATGTGAAGCCAATG
GCGCGATGGGTATTTTCAGCCAAAGCAAACGATAACATTTCTAGCATGGA
ATCACGCCGTCGTTAACAGGAAAAGAACGGCGGCGTGTTGAAACTGGAGC
TCGGCGCCGTGGGTGTCTTCAAGGGCACGGCGGAGTTTTCCGACAACTCC
ATCATTTCGACCAGCATCGACGAAAGCACCGAAGAAGAGATATTGCGCAA
GGGTGGCGCAATCCACACCAAGGTACGTACGCAACGAATTAAAAATGTGC
GTTCGGTCGTGTCGTATAGTTCGGCGATGCATCGAGTGCTTACTTCTCTC
GAGCAGCGTGCTGTCATCTAACAAGCAGAATATACGTCAGACTTCGCGTG
TTTCGTTGCGTTTATTTACTACGCCCGAGAAGCACAAAGAAAGCCATGCG
CGTATCGAACAGCAAGATTCAATTATATAAATGATACACCATGTGCTAAC
AACGTTGCACGATATTTTGGTTCTCTTGACCTCTGCTCGTGAGGTAGGCG
GGCGATTCATAGAGTACGGCTCGTCGCGGAAGCCCGAGGTTAACACGTGA
AACGTCACTAACTCGTGCCAGCGGTTTCGTTTCAATGAATCGAAGCTCTT
TCAAGCTTTCGAGGACATCTACAGTAGCTACACACATAGACGCCGCCTCA
TGTGCCTTGGAGAACTCGTGTCATTGGCGTTGCAGATGATGTACGTGTAG
CGGTGTGAACAAAAATATCCAAAAACTACCTGGACTTATCATGTGTGTTG
TCGTTTTCTACAGGGAAGTCTCACCTTCGAGAAGGACGCCACCTTCAGTG
GAAACCTTAACGACAGGCTGTACTACGGCTCTGGGCCGGGCGGGGCAATA
TCCGTTCATGGCAAGGGAAGCATCTACTTCATGGGCAAGCTCACGATGAC
GGACAACGAAGCCGACGTGAGTCAATCTCCTGGAGACTTCCTGTTTCATG
TTCGGCTGATCTCAGCGTGCTGTGCAATCAAAGTGTTACGACATTCGGTC
GTAATTTTCTGATACCCCTCGTCGCAAATCCATGAGCCAACTTGTGACCG
TACTACAGCAGAAATGGCATCCCACACTGATGAGCCATCTACGTAGCGGA
GAGGTTGGCACTATGGCAGCGGCAGCGGCAACGGCATCAACTAACCCCCA
ACCACCGCCGAAAACAACAGAAAGACAAAGTTGAGTTCCACGAACTTTCT
CCGAAATTCTTACCATACGGCGGTACCGGGGATACTTGAGCTTCGACCCG
CTCGAAGTGTCAGGAAGATAGGGTTGCAGGAAACGTTTCGTACCGCGCCA
TGTGAATTCGACTGGTATCACCTGTGGCTTTGAGTGGACCAAAGCACACG
AGTATTCAGCATGACGAGTGTCTACCTTGTCTCACGCCAGGCAATCAATG
CTATGATGATATGATAATCTGCTCGTGCAGGACTACTTCGGTGGAGCCCA
GGGCGGGGCCATCTTCAACAGAGGTGATATCGTCGTGGACGGCGAGGCGG
AGTTCACGGGCAACATCGGGGGGGTGAGAGTCGTGCACTCGTAGATGCTG
TTTACGGTACCGCTTTTCGCTGCCTCTTGACAGTACGTCGGCTGTGATAG
AGACGGAGGACAGTGCCGGACCTTGTGTTGCCGTACCGTTGGAACATTTT
CCATTGAATATGAGATAACGGTGGGCTTGATTCCTGACCTTGGCTCAGTG
GTTTAGAGGCGGCACCGAATCATGGCGATGACAGTCATGGTGCCTTGTGC
TAGGCCCTAAAACCGGGGCGAAGTTGGGAGAGCGAGCACGGGGGGGGGGG
GACTCTTTTACCTTCCCAACTCAATTGTCTCGCTCCAAGTTCGACTCCTC
ACAATATGTTTGGTGTATTCCACATGTGGTCCGAGGTTGTCGTTGTCAAG
GAAGTTGACATCATGGTAAACTGTTCTTCGAGTGTACGACTACATGATGT
AGTGACGGCTGAATTGTACATGGCCGTCCGGCGCCTTCGTGGGTTGGGTA
GGACGTTACGGCACCGGCATGCCTCCGCCGCATCGACGTCAATCACATAC
ATAGCTGTGAAAAGTTTAATGCCATTTTTCGGTTTGATCTTTTGCTCCTC
TAGCTTAAAACATACCCGTCCCCAAGCTTTGACAGAGGAGGACATGCTGC
GCAATCTAGAACGGACTAGGCGGATGCATCTGTAATGGTTCCACCTGGTC
CTCTTGTCCATCCGTTCATGCCTTCACCGACTGGCAGAGCGGCGGCGCGA
TCTTCCAGGAGAAATGGGCAACGCTTGTGTTCAACGACTTCGTCACATTC
ACGTCCAACAAATGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16417:577..3291+

>mRNA_Ecto-sp13_S_contig16417.4631.1 ID=mRNA_Ecto-sp13_S_contig16417.4631.1|Name=mRNA_Ecto-sp13_S_contig16417.4631.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16417:577..3291+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCAAGCTCACGATGACGGACAACGAAGCCGACGACTACTTCGGTGG
AGCCCAGGGCGGGGCCATCTTCAACAGAGGTGATATCGTCGTGGACGGCG
AGGCGGAGTTCACGGGCAACATCGGGGGGAGCGGCGGCGCGATCTTCCAG
GAGAAATGGGCAACGCTTGTGTTCAACGACTTCGTCACATTCACGTCCAA
CAAATGC
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