mRNA_Ecto-sp13_S_contig1641.4627.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1641.4627.1
Unique NamemRNA_Ecto-sp13_S_contig1641.4627.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1641.4627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1641contigEcto-sp13_S_contig1641:1658..4949 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size259
Hectar predicted targeting categoryother localisation
Exons2
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462863.4874732-CDS-Ecto-sp13_S_contig1641:1657..18451681462863.4874732-CDS-Ecto-sp13_S_contig1641:1657..1845Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1641 1658..1845 +
1681462863.5057328-CDS-Ecto-sp13_S_contig1641:4879..49491681462863.5057328-CDS-Ecto-sp13_S_contig1641:4879..4949Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1641 4880..4949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1641.4627.1prot_Ecto-sp13_S_contig1641.4627.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1641 1658..4949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1641.4627.1

>prot_Ecto-sp13_S_contig1641.4627.1 ID=prot_Ecto-sp13_S_contig1641.4627.1|Name=mRNA_Ecto-sp13_S_contig1641.4627.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
MPTMPIANPPSSVFHRFSPLLHPEVSPFFYCLSHGFCGCGTLFDASSRGV
GGLAYAAIKGGQSRSVDVRFQCVKTRVRRCLVRWDE
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mRNA from alignment at Ecto-sp13_S_contig1641:1658..4949+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1641.4627.1 ID=mRNA_Ecto-sp13_S_contig1641.4627.1|Name=mRNA_Ecto-sp13_S_contig1641.4627.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3292bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1641:1658..4949+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCAACAATGCCAATTGCGAACCCCCCGTCCTCCGTATTTCACCGCTT
TTCACCATTGCTTCACCCCGAGGTGTCACCGTTTTTCTACTGCCTCAGCC
ACGGTTTCTGCGGTTGTGGCACTCTGTTCGACGCGTCATCTCGAGGTGTT
GGAGGTCTCGCCTACGCTGCCATCAAGGGCGGGCAAAGGTCGGTCGTCAG
TCGTTCTTGAGCAGACCAGCAGCAGCAGCAGTTCATAGATACCTGCTGGA
ATTTTCTGCAGCAGGTGAAATACACCGCTGACAGCGTGTTGAGCCACATT
TCGCCGTATGCTACCGCACGTGTATCACAGCCAACCGGTAGAGCGGTGCG
GTACGTCTCGCGGAAGGTGTCGGAGGTAAGAGGGGCCTAGAAATACCGCG
CGCGTGTGCAACACGGGCGAGCTTCTGCTGCTTGTCTGGATCTGTGTTAC
ATGCATGTTCGTTGAATCTTTTGGACGGAGATAGTATACACCTGGTGCTG
GGGAGTGCTGTGTGTGCTCCGTCTTCGGCACCTAGAAGGGCGAATTGAAT
AAAGACAAAGCGTTGCCAGCGCTCGCCCGCCGTCAATGTAAGACGAGTAG
GTGTAGCCTATTGGCGGCACATTTTAATTTTAACTACAGGGTAACGGGTT
TGTAGATCAACGCCTCTCCCCTTGGGCACAACAGTCCTTGACGTGTCGTA
TGGCAGTATCTCAGACGAGTGCCTTCTCAGCAGGGTACTGGTGTAGATTA
ACAGCAGCAGAGCAGAAGACGCGTCCCCACAGCAACAAGATGTACGTTGG
TTGCACCGCGTTTCTGATTGATTTGGTGTGTTCGCGATCGACCCTGCCCA
CCACGGCCGTTCTAATCCTTAACCCGCCTTCAAGGCCGGAGATGCGCTGC
GAAATGCTTCTTCGTGTGGTCTGTCTGTCTCTACTTCTCTACCTGTGCTT
GGGTACAGACTACCCAGGCTATTCAATCTACGAGTGCTGTAAATTTGTTA
TGGTCCGCTCCGCCCAGGGGGTTGTTCCAGAGACCGTTCCATTTCTGCCC
ACTTGGTTGGGACGTGTTTTTCGTACTGCTGTACAACGTAAGAGTTGATG
GGAGTTGGGTGGGCTGCTGCCTCGCTTGCGTCACCAAAGCATACACACAT
CTGCAGCATCAATCACCGTTTGAGTGACGCTACATGGTCGATCTCCGCTC
TCAGCGGTACCTAACTCACGTTCGGAGGGTGGCTGTGATAAGGCTACCCA
CCTATGCGTACAATCCCCCCTAGTCTCTAATCTCATCGGATCTGTAGGTA
GAAACAAAAAGTGTGACCCGTCGGATATATAGGATACACGGGCGCATTGG
ATTCGTGTCGCTTCTAAACTGCTGCTGCTGTTCTGTGGTCATAACGTCAT
CACAGGATTTTGGAACTAGAGCATCTGTAGGAAAAAACTGGAAAACGGAC
AAAACGAAAAAAAGCTGGAAAACACTCGTGGAGGACGAGGTCAAGTGCCG
ACACTCCTTCCTTCTCCCTGATCATTCGACGACTTATTGGTGCTGTTGGT
TGTGCCCCCCCGACTTGCACATGTTGAAGCTGCTGTCGGTGGCGCTAAAT
TAGAACTACGAGCAGAGGGTTCGGGGGACAGAGGTGCCCGGGCATTAATG
GCGTTTGTTGAATTATTGCTATATGATACAACTAATTGCCGGCGTGTTCT
AATGTTGGGGTGTATGCGCAGCCGTTGTGTGGGGATGTGAAACTGCATCC
TTATGAAGTGTATGTTATGTAGTGGTGACCTCACTAAGACGCGCGCGACG
GTTGTATACCAATGCAAACAGGGCGAGGGGACGGAAGTGCTAACATTAAA
TACATGTATGCATATGCACTTCTACAACTGATGCGGTAGCGAGTATGATT
GGAGGGAGTGTGAAATGCAACATGATAAATTTTAGCGTATGCTGCTGTAC
AATACAACAGCAAGCAGCCATTTCCGACCAAAGGGTTGAGAATATCGATA
TCCCCGTCGAAGAGGACGAATGTGAAGATTTGAATCAGCGTTACTCGTCA
GAGAGGATAGTGCAAGGGGCCTTGAATCCTGCAAGCTTCAGAGTAAACAG
CAGTAGTGATATGCGTATGTATGTAATACAAGACGAGGGGTGAACATGGC
GGCGCTATTGTAACAACACTCCCCCTGCAGCTCTAGGGCGATAGAGAAGT
CGGACAGAGGGCAAACCAGTACAGAGCAACGATGCTATACTAGCATGGGA
GAAACAGATCATGCAGATGCAATGCTGCTTGGTTGCATCTTCGAGCGTCC
TCTCTTGTACGGAAGGTAGTAGTTGAGAAGCAGTACACTAATATCATTCA
ACACTATCGTCCAACTCCCTCGCCCCCCCCTATCGGTATAATCCTTTGCC
CTTCGGCTAGAAACCGTGTTTTTTAGCCCACTAGCTGTATGCACAAGACG
GACGTATTGTAGTAAGCCAGCCGGTAAGTACCGTCGTTGTTGCATACTGT
AAATAATTTTTAAAAGGCCAAACACACAACTGCTGACAACTAATTGCGTA
CGCCTCAAGGAAGCTGCTGGTACCCATTTGTTTGTTGTAGGCAATCATGA
GTGTTTTTTACTCCGGTGGACGCTCGCCAAGCCCTGGGGTGAAGACCATA
CCCTTCCATAACCCGCTTTGCTGCTATTATTGTAGCGAATAACAGCTTGT
AGCGCGTCTTCGCGGGAATGGTACTGCATTAGACAACACACACTCACTTT
TTTTTTTCTTTCGACCTCTTCGCCCCGCTAGAATTCAATAGCCGACATGG
GATGACCTTGTCTTTGAACCCGACCAACGTGACAGGGAAATAAGCAAGGC
CGAGGTCTGAATTCTTTCTCGCTCATTTCCCAAGGCAAAGGCTGAAGACG
ATAATTCAACCTGATTTTTTTTGTTTATCTCCTCCATATTTCGCGAAAGC
ACTACGCTATTATTTAAAACAGCATGACGTAACTTGCTGTTGCAGCAGAC
ACCTGGGAGTAGCCATTTCCCCCACAAAAAAAGCCTGCCACCATGCTCAA
TTTATGCCATTCCCGACTTGTTGGCCACAATTACTCAAGGAGCACACGAA
AGCATCGAGCGCTACAGTACTGCTGTAATATAGTCCAGCAACCATATTTT
TGTGTCGAAACTGACGTACTATACCGTTCCACCGTACCTGTGAAACGGCT
GTGCTCTTTGTGTTTTCGGAAGCAGAAGCGTGGACGTCAGGTTCCAGTGC
GTCAAGACACGAGTCCGGCGGTGCTTGGTACGGTGGGACGAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1641:1658..4949+

>mRNA_Ecto-sp13_S_contig1641.4627.1 ID=mRNA_Ecto-sp13_S_contig1641.4627.1|Name=mRNA_Ecto-sp13_S_contig1641.4627.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1641:1658..4949+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCAACAATGCCAATTGCGAACCCCCCGTCCTCCGTATTTCACCGCTT
TTCACCATTGCTTCACCCCGAGGTGTCACCGTTTTTCTACTGCCTCAGCC
ACGGTTTCTGCGGTTGTGGCACTCTGTTCGACGCGTCATCTCGAGGTGTT
GGAGGTCTCGCCTACGCTGCCATCAAGGGCGGGCAAAGCAGAAGCGTGGA
CGTCAGGTTCCAGTGCGTCAAGACACGAGTCCGGCGGTGCTTGGTACGGT
GGGACGAA
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