mRNA_Ecto-sp13_S_contig16409.4626.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16409.4626.1
Unique NamemRNA_Ecto-sp13_S_contig16409.4626.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16409.4626.1 vs. uniprot
Match: A0A6H5J9P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9P1_9PHAE)

HSP 1 Score: 672 bits (1735), Expect = 1.540e-241
Identity = 350/401 (87.28%), Postives = 365/401 (91.02%), Query Frame = 1 
Query:    1 WTRSQENFGEATEAVRSRCNDIEDLSSTHVAENAKPLPFLESGEVKSPQPSIGNPPKQSESDYCENEHPTLDQI---EGSQNSLNSPPWRRAHDELPTQLSKRGSEAPELVNDRLATAGAEAADTNVDETGVRDMVPVGLYAENLVPDKSINARGGGGDELETLDARARTLLEECRQVLAPSSTITLDEVPSFTSSASQSNGPVIAALDDLPEELEKRAWMLL-HCEEPPLLPAYKEEVLPVPCSSKPPANDAQGDLVRLGEDDGKTAKVLLRRNPPRGAVARPLGEREGAYHLEQERGCQPRCSSDVRNLGDVKVDSIGRVCLTTTDSRYSNNERTWYSPVLNSSGVQERISSMRLATTPGEEYWFRQDPVLSALLRRHDEVETELKRRRALEPNGDLAS 1191
            WTRSQENFGEATEAVRSRCNDIED SSTHVAENAKPLPFLESGE KSPQPSIG+PPKQSESD CENE PTLDQI   EGSQ  LNSPP RRAHDELPTQLSKRGSEAPELVNDRLATA AEAADTNV ETGV DMVPVGL+AENLV +KSINAR GGGDEL+TLDARARTLL+ECRQVLAPSSTITLDEV SFT SASQSNGP+IAALDDLPEELEKRAWMLL HCEEPPLLPAY EEVL VPCSSKPPA DAQGDLVRLG+ DGKTAKVLLRRNPP GAVARPLGEREGAYHL+Q RGCQ RCSSDVRNL DV +DSIGRVC T  +SR+SN ERTWYSP L+SSGVQER+SSM +ATTPGEE WFRQDPVLSALLRRHDEVE ELKRRRALEPNG+L S
Sbjct:   41 WTRSQENFGEATEAVRSRCNDIEDRSSTHVAENAKPLPFLESGEGKSPQPSIGSPPKQSESDDCENERPTLDQIAVLEGSQPPLNSPPGRRAHDELPTQLSKRGSEAPELVNDRLATAEAEAADTNVHETGVHDMVPVGLHAENLVLNKSINARDGGGDELQTLDARARTLLQECRQVLAPSSTITLDEVASFTYSASQSNGPIIAALDDLPEELEKRAWMLLNHCEEPPLLPAYNEEVLAVPCSSKPPAIDAQGDLVRLGKYDGKTAKVLLRRNPPGGAVARPLGEREGAYHLDQGRGCQSRCSSDVRNLRDVNIDSIGRVCSTIAESRHSNRERTWYSPALDSSGVQERMSSMTVATTPGEEDWFRQDPVLSALLRRHDEVEAELKRRRALEPNGNLVS 441
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BLAST of mRNA_Ecto-sp13_S_contig16409.4626.1 vs. uniprot
Match: D8LE30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE30_ECTSI)

HSP 1 Score: 626 bits (1614), Expect = 3.760e-223
Identity = 333/401 (83.04%), Postives = 348/401 (86.78%), Query Frame = 1 
Query:    1 WTRSQENFGEATEAVRSRCNDIEDLSSTHVAENAKPLPFLESGEVKSPQPSIGNPPKQSESDYCENEHPTLDQI---EGSQNSLNSPPWRRAHDELPTQLSKRGSEAPELVNDRLATAGAEAADTNVDETGVRDMVPVGLYAENLVPDKSINARGGGGDELETLDARARTLLEECRQVLAPSSTITLDEVPSFTSSASQSNGPVIAALDDLPEELEKRAWMLLH-CEEPPLLPAYKEEVLPVPCSSKPPANDAQGDLVRLGEDDGKTAKVLLRRNPPRGAVARPLGEREGAYHLEQERGCQPRCSSDVRNLGDVKVDSIGRVCLTTTDSRYSNNERTWYSPVLNSSGVQERISSMRLATTPGEEYWFRQDPVLSALLRRHDEVETELKRRRALEPNGDLAS 1191
            WTRSQE FGEATEAVRSRCNDIEDL STHVAE  KP P+LESG+ KSPQPSIG+P KQSESD CEN+   LDQ+   EGSQ  LNSPP R AHDELPTQLS  GSEAPELVNDRLATA  EAADTNVDETGV   V +GL AE+LV DKSINA   GGDELETLD RARTLLEECRQVLAPSSTITLD+V SFTSSASQSNGP+IAALD+LPEELEKRAWMLL+ CEEPPLLP Y EEVL VPCSSKPPA D QGDLVRLGEDDGKTAKVLLRRNPP G VARP GEREGAYHL+QERG QP CSSDV NLGDV VDSIGRV  T TDSRYSNNERTWYSP L+SSGVQER+SSM LATTPGEE WFR+DPVLSALLRRHDEVETELKRRRALEPNGDL S
Sbjct:   41 WTRSQEKFGEATEAVRSRCNDIEDLPSTHVAEIVKPPPYLESGKGKSPQPSIGSPSKQSESDDCENKRRMLDQLAVLEGSQTPLNSPPGRPAHDELPTQLSTSGSEAPELVNDRLATAEVEAADTNVDETGVH--VSIGLDAESLVQDKSINACDRGGDELETLDVRARTLLEECRQVLAPSSTITLDQVRSFTSSASQSNGPIIAALDNLPEELEKRAWMLLNNCEEPPLLPTYNEEVLAVPCSSKPPALDTQGDLVRLGEDDGKTAKVLLRRNPPGGVVARPFGEREGAYHLDQERGWQPTCSSDVGNLGDVNVDSIGRVFPTITDSRYSNNERTWYSPALDSSGVQERMSSMTLATTPGEEDWFRRDPVLSALLRRHDEVETELKRRRALEPNGDLVS 439
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16409.4626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J9P1_9PHAE1.540e-24187.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LE30_ECTSI3.760e-22383.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16409contigEcto-sp13_S_contig16409:1624..3077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1194
Hectar predicted targeting categoryother localisation
Exons2
Cds size1194
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462863.4416318-CDS-Ecto-sp13_S_contig16409:1623..22591681462863.4416318-CDS-Ecto-sp13_S_contig16409:1623..2259Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16409 1624..2259 -
1681462863.450464-CDS-Ecto-sp13_S_contig16409:2519..30771681462863.450464-CDS-Ecto-sp13_S_contig16409:2519..3077Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16409 2520..3077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16409.4626.1prot_Ecto-sp13_S_contig16409.4626.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16409 1624..3077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16409.4626.1

>prot_Ecto-sp13_S_contig16409.4626.1 ID=prot_Ecto-sp13_S_contig16409.4626.1|Name=mRNA_Ecto-sp13_S_contig16409.4626.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=398bp
WTRSQENFGEATEAVRSRCNDIEDLSSTHVAENAKPLPFLESGEVKSPQP
SIGNPPKQSESDYCENEHPTLDQIEGSQNSLNSPPWRRAHDELPTQLSKR
GSEAPELVNDRLATAGAEAADTNVDETGVRDMVPVGLYAENLVPDKSINA
RGGGGDELETLDARARTLLEECRQVLAPSSTITLDEVPSFTSSASQSNGP
VIAALDDLPEELEKRAWMLLHCEEPPLLPAYKEEVLPVPCSSKPPANDAQ
GDLVRLGEDDGKTAKVLLRRNPPRGAVARPLGEREGAYHLEQERGCQPRC
SSDVRNLGDVKVDSIGRVCLTTTDSRYSNNERTWYSPVLNSSGVQERISS
MRLATTPGEEYWFRQDPVLSALLRRHDEVETELKRRRALEPNGDLAS*
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mRNA from alignment at Ecto-sp13_S_contig16409:1624..3077-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16409.4626.1 ID=mRNA_Ecto-sp13_S_contig16409.4626.1|Name=mRNA_Ecto-sp13_S_contig16409.4626.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1454bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16409:1624..3077- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGACGCGATCTCAAGAGAACTTTGGTGAGGCCACTGAAGCGGTGCGATC
GAGGTGCAACGATATCGAAGACCTGTCAAGCACCCACGTCGCAGAAAACG
CGAAACCTCTTCCCTTCCTGGAATCGGGCGAAGTCAAATCCCCTCAACCC
AGCATCGGAAACCCTCCGAAGCAAAGCGAATCTGATTATTGCGAGAATGA
GCACCCAACGCTCGACCAGATTGAGGGATCACAAAACTCCCTCAACTCAC
CTCCATGGCGTCGGGCCCATGATGAATTGCCCACACAACTTTCCAAGAGG
GGGTCGGAGGCACCTGAGCTCGTGAATGACAGACTGGCGACGGCAGGGGC
GGAGGCGGCGGATACAAATGTAGACGAGACGGGAGTACGCGATATGGTGC
CAGTTGGTCTTTACGCTGAAAACTTGGTACCGGACAAATCTATCAATGCG
CGTGGCGGAGGAGGTGACGAGCTTGAGACTCTAGACGCCCGCGCCCGCAC
TCTGCTGGAAGAATGCCGGCAGGTACTCGCACCGTCATCAACCATCACAT
TAGATGAGGTGCGAAGGGATTGTTTCGGTTAAGGCCATTGAACGGGCACG
AGGCGCTCAACGCAACGCGTGTCCGACAAGGCAGTATTAGCTTGTTTGCC
GTCGGGCTCGCAACTTGCCGTTCGTGGTGACTTGCAAGAATAACGTGTTT
TTATTTGTAGGTCCAACGCCCCAACCAAATTTTCGGCGAGTCTGCAGGAC
GGAAGCTACGCTTGCCCGAAGTGGGATACGCTCTCTAAAAGATTGATAAA
CTGGTTGGATGTGTGCAGGTGCCGTCGTTTACATCTTCTGCATCTCAAAG
CAACGGGCCAGTCATCGCCGCGTTGGATGACCTCCCAGAAGAGCTAGAGA
AACGCGCGTGGATGCTTTTACACTGCGAGGAACCGCCACTGCTGCCAGCG
TACAAAGAGGAGGTTCTACCAGTGCCTTGCAGCAGCAAACCTCCTGCTAA
TGATGCACAGGGCGATCTCGTCCGCCTGGGTGAGGACGACGGAAAAACAG
CAAAGGTGCTCCTTCGCAGGAACCCTCCGAGGGGCGCCGTCGCTAGACCC
TTAGGCGAAAGGGAAGGCGCGTACCACTTGGAACAAGAACGTGGCTGCCA
ACCAAGATGTTCGAGCGATGTTCGAAACTTAGGCGATGTTAAAGTCGACT
CAATAGGGCGTGTTTGCCTCACAACTACGGACTCAAGATATTCGAACAAC
GAGCGCACCTGGTACAGCCCAGTGTTGAACAGCAGTGGTGTTCAAGAACG
AATATCGTCAATGAGGCTTGCAACGACCCCAGGGGAGGAATACTGGTTTC
GCCAAGATCCTGTACTCTCGGCATTGCTGCGGCGCCATGATGAGGTCGAG
ACGGAGCTCAAGAGGCGGCGAGCGCTCGAACCAAACGGCGATTTGGCGTC
ATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16409:1624..3077-

>mRNA_Ecto-sp13_S_contig16409.4626.1 ID=mRNA_Ecto-sp13_S_contig16409.4626.1|Name=mRNA_Ecto-sp13_S_contig16409.4626.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1194bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16409:1624..3077- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGACGCGATCTCAAGAGAACTTTGGTGAGGCCACTGAAGCGGTGCGATC
GAGGTGCAACGATATCGAAGACCTGTCAAGCACCCACGTCGCAGAAAACG
CGAAACCTCTTCCCTTCCTGGAATCGGGCGAAGTCAAATCCCCTCAACCC
AGCATCGGAAACCCTCCGAAGCAAAGCGAATCTGATTATTGCGAGAATGA
GCACCCAACGCTCGACCAGATTGAGGGATCACAAAACTCCCTCAACTCAC
CTCCATGGCGTCGGGCCCATGATGAATTGCCCACACAACTTTCCAAGAGG
GGGTCGGAGGCACCTGAGCTCGTGAATGACAGACTGGCGACGGCAGGGGC
GGAGGCGGCGGATACAAATGTAGACGAGACGGGAGTACGCGATATGGTGC
CAGTTGGTCTTTACGCTGAAAACTTGGTACCGGACAAATCTATCAATGCG
CGTGGCGGAGGAGGTGACGAGCTTGAGACTCTAGACGCCCGCGCCCGCAC
TCTGCTGGAAGAATGCCGGCAGGTACTCGCACCGTCATCAACCATCACAT
TAGATGAGGTGCCGTCGTTTACATCTTCTGCATCTCAAAGCAACGGGCCA
GTCATCGCCGCGTTGGATGACCTCCCAGAAGAGCTAGAGAAACGCGCGTG
GATGCTTTTACACTGCGAGGAACCGCCACTGCTGCCAGCGTACAAAGAGG
AGGTTCTACCAGTGCCTTGCAGCAGCAAACCTCCTGCTAATGATGCACAG
GGCGATCTCGTCCGCCTGGGTGAGGACGACGGAAAAACAGCAAAGGTGCT
CCTTCGCAGGAACCCTCCGAGGGGCGCCGTCGCTAGACCCTTAGGCGAAA
GGGAAGGCGCGTACCACTTGGAACAAGAACGTGGCTGCCAACCAAGATGT
TCGAGCGATGTTCGAAACTTAGGCGATGTTAAAGTCGACTCAATAGGGCG
TGTTTGCCTCACAACTACGGACTCAAGATATTCGAACAACGAGCGCACCT
GGTACAGCCCAGTGTTGAACAGCAGTGGTGTTCAAGAACGAATATCGTCA
ATGAGGCTTGCAACGACCCCAGGGGAGGAATACTGGTTTCGCCAAGATCC
TGTACTCTCGGCATTGCTGCGGCGCCATGATGAGGTCGAGACGGAGCTCA
AGAGGCGGCGAGCGCTCGAACCAAACGGCGATTTGGCGTCATAG
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