mRNA_Ecto-sp13_S_contig16409.4625.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16409.4625.1
Unique NamemRNA_Ecto-sp13_S_contig16409.4625.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16409.4625.1 vs. uniprot
Match: A0A7S2FF76_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FF76_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.370e-16
Identity = 31/60 (51.67%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    1 VPRACVLDLWEAFNDVAEGFGLTIIEFREMLQCSLKEYLGFTDNRLTEVADAVFSTFDDD 180
            +P+A V DLW+ FND++EGFGLT  EF E+L+C LK+YL +++ +L  +  AVF  +DDD
Sbjct:   20 LPKASVYDLWDGFNDISEGFGLTCDEFLEILRCCLKDYLNYSEKKLDNIGKAVFIIYDDD 79          
BLAST of mRNA_Ecto-sp13_S_contig16409.4625.1 vs. uniprot
Match: A0A482S2R5_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S2R5_9ARCH)

HSP 1 Score: 72.8 bits (177), Expect = 2.890e-15
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query:    1 VPRACVLDLWEAFNDVAEGFGLTIIEFREMLQCSLKEYLGFTDNRLTEVADAVFSTFDDD 180
            VP+ CV DLWEAFND+AEGFGLTI EF E+L+ +  E+L  T+  L    DA+F   DDD
Sbjct:   27 VPKRCVFDLWEAFNDIAEGFGLTIEEFAEILKSATMEFLQATEKNLGPDIDALFRLLDDD 86          
BLAST of mRNA_Ecto-sp13_S_contig16409.4625.1 vs. uniprot
Match: A0A7S2KZJ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KZJ6_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 8.050e-15
Identity = 30/60 (50.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    1 VPRACVLDLWEAFNDVAEGFGLTIIEFREMLQCSLKEYLGFTDNRLTEVADAVFSTFDDD 180
            +P   V +LWEAFNDVAEGFGL I EF++M++ S+K++ G +D RL  +++ +F  +DDD
Sbjct:   20 LPHKTVQELWEAFNDVAEGFGLNIDEFQDMIRLSVKDFTGISDKRLNALSEVLFRVYDDD 79          
BLAST of mRNA_Ecto-sp13_S_contig16409.4625.1 vs. uniprot
Match: A0A7S3JVR1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JVR1_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 4.800e-12
Identity = 30/60 (50.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:    1 VPRACVLDLWEAFNDVAEGFGLTIIEFREMLQCSLKEYLGFTDNRLTEVADAVFSTFDDD 180
            +P  C+ +LW+AFNDVAEGFGLT  E  E+L+ +L+E+LG+T+ +L  ++  +FS  DDD
Sbjct:   20 LPCRCIHELWKAFNDVAEGFGLTREEMIEILRVALREFLGYTEKKLENLSRELFSILDDD 79          
BLAST of mRNA_Ecto-sp13_S_contig16409.4625.1 vs. uniprot
Match: D8LE31_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE31_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 7.510e-11
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 1
Query:   88 MLQCSLKEYLGFTDNRLTEVADAVFSTFDDD 180
            MLQCSLKEYLGFTD+RLTEVADAVFSTFDDD
Sbjct:    1 MLQCSLKEYLGFTDSRLTEVADAVFSTFDDD 31          
BLAST of mRNA_Ecto-sp13_S_contig16409.4625.1 vs. uniprot
Match: A0A8J2SIX3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SIX3_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 8.710e-9
Identity = 28/60 (46.67%), Postives = 40/60 (66.67%), Query Frame = 1
Query:    1 VPRACVLDLWEAFNDVAEGFGLTIIEFREMLQCSLKEYLGFTDNRLTEVADAVFSTFDDD 180
            VP A V  LW+AFND+AEG GLT  E  E+L+  LK+ LG+ + +L  ++ ++F   DDD
Sbjct:   20 VPSASVHHLWDAFNDIAEGMGLTSDETCEILRVCLKDVLGYAEKKLDALSRSLFVALDDD 79          
BLAST of mRNA_Ecto-sp13_S_contig16409.4625.1 vs. uniprot
Match: A0A835ZKM6_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKM6_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 3.340e-6
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 1
Query:    1 VPRACVLDLWEAFNDVAEGFGLTIIEFREMLQCSLKEYL 117
            +P+  V DLWEAFNDVAEGFGL+  E R+ML  +L+ +L
Sbjct:   21 LPKPRVYDLWEAFNDVAEGFGLSPEEVRDMLHAALRAHL 59          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16409.4625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7S2FF76_9STRA2.370e-1651.67Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A482S2R5_9ARCH2.890e-1556.67Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2KZJ6_9STRA8.050e-1550.00Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S3JVR1_9STRA4.800e-1250.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
D8LE31_ECTSI7.510e-1196.77EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A8J2SIX3_9STRA8.710e-946.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A835ZKM6_9STRA3.340e-658.97WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16409contigEcto-sp13_S_contig16409:47..226 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size180
Hectar predicted targeting categoryother localisation
Exons1
Cds size180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462863.4072528-CDS-Ecto-sp13_S_contig16409:46..2261681462863.4072528-CDS-Ecto-sp13_S_contig16409:46..226Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16409 47..226 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16409.4625.1prot_Ecto-sp13_S_contig16409.4625.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16409 47..226 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16409.4625.1

>prot_Ecto-sp13_S_contig16409.4625.1 ID=prot_Ecto-sp13_S_contig16409.4625.1|Name=mRNA_Ecto-sp13_S_contig16409.4625.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
VPRACVLDLWEAFNDVAEGFGLTIIEFREMLQCSLKEYLGFTDNRLTEVA
DAVFSTFDDD
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mRNA from alignment at Ecto-sp13_S_contig16409:47..226-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16409.4625.1 ID=mRNA_Ecto-sp13_S_contig16409.4625.1|Name=mRNA_Ecto-sp13_S_contig16409.4625.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16409:47..226- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCCAAGGGCGTGTGTGCTAGATTTATGGGAGGCTTTTAACGACGTCGC CGAAGGCTTTGGCTTGACCATCATCGAGTTCAGAGAAATGCTACAGTGCT CGCTCAAGGAGTACTTGGGGTTTACTGACAACCGACTGACGGAGGTGGCA GATGCGGTTTTCAGTACTTTCGACGACGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16409:47..226-

>mRNA_Ecto-sp13_S_contig16409.4625.1 ID=mRNA_Ecto-sp13_S_contig16409.4625.1|Name=mRNA_Ecto-sp13_S_contig16409.4625.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16409:47..226- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGCCAAGGGCGTGTGTGCTAGATTTATGGGAGGCTTTTAACGACGTCGC
CGAAGGCTTTGGCTTGACCATCATCGAGTTCAGAGAAATGCTACAGTGCT
CGCTCAAGGAGTACTTGGGGTTTACTGACAACCGACTGACGGAGGTGGCA
GATGCGGTTTTCAGTACTTTCGACGACGAC
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