mRNA_Ecto-sp13_S_contig16408.4624.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16408.4624.1
Unique NamemRNA_Ecto-sp13_S_contig16408.4624.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16408.4624.1 vs. uniprot
Match: A0A6H5KIJ4_9PHAE (MazG domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIJ4_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 1.400e-46
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 1
Query:    1 DRNWQKFHTPRNICLALMGEAGELSELFQFKDEDTCCQGLPLWSRDDRDKLSQEMADVFIYITRLADLCGVDLCA 225
            +RNWQKFHTPRNICLALMGEAGELSELFQFKDEDTCCQGLP WSRDDRDKLSQEMADVFIY+TRLADLCGVDLCA
Sbjct:  190 ERNWQKFHTPRNICLALMGEAGELSELFQFKDEDTCCQGLPSWSRDDRDKLSQEMADVFIYVTRLADLCGVDLCA 264          
BLAST of mRNA_Ecto-sp13_S_contig16408.4624.1 vs. uniprot
Match: D7FVS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS0_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 2.780e-30
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 1
Query:    1 DRNWQKFHTPRNICLALMGEAGELSELFQFKDEDTCCQGLPLWSRDDRDKLSQ 159
            +RNWQKFHTPRNICLALMGE GELSELFQFKDEDTCCQGLP WSRDDRDKLSQ
Sbjct:  146 ERNWQKFHTPRNICLALMGETGELSELFQFKDEDTCCQGLPAWSRDDRDKLSQ 198          
BLAST of mRNA_Ecto-sp13_S_contig16408.4624.1 vs. uniprot
Match: C1N020_MICPC (Xtp3a-related NTP pyrophosphatase n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N020_MICPC)

HSP 1 Score: 104 bits (260), Expect = 1.090e-24
Identity = 44/74 (59.46%), Postives = 59/74 (79.73%), Query Frame = 1
Query:    4 RNWQKFHTPRNICLALMGEAGELSELFQFKDEDTCCQGLPLWSRDDRDKLSQEMADVFIYITRLADLCGVDLCA 225
            R+W +FH+PRN+ LA++GE GE+SELFQ++ +D C  GLP WSR+DR +L  E+ADV +Y+ RLAD CGVDL A
Sbjct:  181 RDWDQFHSPRNVLLAMVGEVGEVSELFQWRGDDDCATGLPSWSREDRARLEDELADVQLYLVRLADRCGVDLAA 254          
BLAST of mRNA_Ecto-sp13_S_contig16408.4624.1 vs. uniprot
Match: A0A5J4YZL8_PORPP (dCTP pyrophosphatase 1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZL8_PORPP)

HSP 1 Score: 97.1 bits (240), Expect = 3.940e-24
Identity = 43/73 (58.90%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    1 DRNWQKFHTPRNICLALMGEAGELSELFQFKDEDTCCQGLPLWSRDDRDKLSQEMADVFIYITRLADLCGVDL 219
            +R W++FHTPRN+ LAL+GE GEL+ELFQ+K +  C  GLP WS  +R+ L +EM+DV IY+ RLAD CGV L
Sbjct:   31 EREWEQFHTPRNLLLALVGEVGELAELFQWKGDAGCGPGLPGWSDAEREHLGEEMSDVLIYLIRLADRCGVSL 103          
BLAST of mRNA_Ecto-sp13_S_contig16408.4624.1 vs. uniprot
Match: A0A6J1C5G1_MOMCH (dCTP pyrophosphatase 1 n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1C5G1_MOMCH)

HSP 1 Score: 95.9 bits (237), Expect = 6.150e-24
Identity = 42/72 (58.33%), Postives = 56/72 (77.78%), Query Frame = 1
Query:    4 RNWQKFHTPRNICLALMGEAGELSELFQFKDEDTCCQGLPLWSRDDRDKLSQEMADVFIYITRLADLCGVDL 219
            R W K HTPRN+ LAL+GE GELSE+FQ+K E    +GLP WS DD++ L +E++DV +Y+ RLAD+CG+DL
Sbjct:   27 RGWDKHHTPRNLLLALVGEVGELSEIFQWKGE--VARGLPNWSADDKEHLEEELSDVLLYLVRLADVCGLDL 96          
BLAST of mRNA_Ecto-sp13_S_contig16408.4624.1 vs. uniprot
Match: A0A1Y3B9U1_EURMA (dCTP pyrophosphatase 1 n=1 Tax=Euroglyphus maynei TaxID=6958 RepID=A0A1Y3B9U1_EURMA)

HSP 1 Score: 95.1 bits (235), Expect = 1.080e-23
Identity = 41/73 (56.16%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    1 DRNWQKFHTPRNICLALMGEAGELSELFQFKDEDTCCQGLPLWSRDDRDKLSQEMADVFIYITRLADLCGVDL 219
            +RNWQ+FH PRNI LAL+GE GE+SE FQ+K +  C  GLP W+  +R  L+ E++DVFIY+ RLAD C +D+
Sbjct:   36 ERNWQQFHQPRNILLALIGELGEISEHFQWKPDSDCDHGLPKWTEHERIALADELSDVFIYLIRLADRCRIDV 108          
BLAST of mRNA_Ecto-sp13_S_contig16408.4624.1 vs. uniprot
Match: UPI001CC55F24 (dCTP pyrophosphatase 1-like n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC55F24)

HSP 1 Score: 95.1 bits (235), Expect = 1.350e-23
Identity = 41/72 (56.94%), Postives = 57/72 (79.17%), Query Frame = 1
Query:    4 RNWQKFHTPRNICLALMGEAGELSELFQFKDEDTCCQGLPLWSRDDRDKLSQEMADVFIYITRLADLCGVDL 219
            R W +FH+PRN+ LAL+GE GELSE+FQ+K E    +GLP WS DD++ L +E++DV +Y+ RLAD+CG+DL
Sbjct:   37 RGWDQFHSPRNLLLALVGEVGELSEIFQWKGE--VAKGLPNWSSDDKEHLEEEISDVLLYLVRLADVCGLDL 106          
BLAST of mRNA_Ecto-sp13_S_contig16408.4624.1 vs. uniprot
Match: A0A1S3UPR7_VIGRR (dCTP pyrophosphatase 1 n=8 Tax=Phaseoleae TaxID=163735 RepID=A0A1S3UPR7_VIGRR)

HSP 1 Score: 95.1 bits (235), Expect = 1.500e-23
Identity = 40/72 (55.56%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    4 RNWQKFHTPRNICLALMGEAGELSELFQFKDEDTCCQGLPLWSRDDRDKLSQEMADVFIYITRLADLCGVDL 219
            R W+++H+PRN+ LAL+GE GELSE+FQ+K E    +GLP WS DD++ L +E++DV +Y+ RLAD+CG+DL
Sbjct:   29 RGWEQYHSPRNLLLALVGEVGELSEIFQWKGE--VAKGLPNWSSDDKEHLEEELSDVLLYLVRLADVCGLDL 98          
BLAST of mRNA_Ecto-sp13_S_contig16408.4624.1 vs. uniprot
Match: UPI0010A515C4 (dCTP pyrophosphatase 1-like n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A515C4)

HSP 1 Score: 95.1 bits (235), Expect = 1.500e-23
Identity = 41/72 (56.94%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    4 RNWQKFHTPRNICLALMGEAGELSELFQFKDEDTCCQGLPLWSRDDRDKLSQEMADVFIYITRLADLCGVDL 219
            R W ++H+PRN+ LAL+GE GELSE+FQ+K E    +GLP WSRDD++ L +E++DV +Y+ RLAD+CG+DL
Sbjct:   31 RGWDQYHSPRNLLLALVGEVGELSEIFQWKGEVE--KGLPNWSRDDKEHLEEELSDVLLYLVRLADVCGLDL 100          
BLAST of mRNA_Ecto-sp13_S_contig16408.4624.1 vs. uniprot
Match: A0A067K5B3_JATCU (dCTP pyrophosphatase 1 n=2 Tax=Jatropha curcas TaxID=180498 RepID=A0A067K5B3_JATCU)

HSP 1 Score: 94.7 bits (234), Expect = 1.660e-23
Identity = 40/72 (55.56%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    4 RNWQKFHTPRNICLALMGEAGELSELFQFKDEDTCCQGLPLWSRDDRDKLSQEMADVFIYITRLADLCGVDL 219
            R W+++H+PRN+ LAL+GE GELSE+FQ+K E    +GLP WS DD++ L +E++DV +Y+ RLAD+CG+DL
Sbjct:   30 RGWEQYHSPRNLLLALVGEVGELSEIFQWKGE--VAKGLPNWSSDDKEHLEEELSDVLLYLIRLADVCGLDL 99          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16408.4624.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIJ4_9PHAE1.400e-4696.00MazG domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FVS0_ECTSI2.780e-3094.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
C1N020_MICPC1.090e-2459.46Xtp3a-related NTP pyrophosphatase n=1 Tax=Micromon... [more]
A0A5J4YZL8_PORPP3.940e-2458.90dCTP pyrophosphatase 1 n=1 Tax=Porphyridium purpur... [more]
A0A6J1C5G1_MOMCH6.150e-2458.33dCTP pyrophosphatase 1 n=1 Tax=Momordica charantia... [more]
A0A1Y3B9U1_EURMA1.080e-2356.16dCTP pyrophosphatase 1 n=1 Tax=Euroglyphus maynei ... [more]
UPI001CC55F241.350e-2356.94dCTP pyrophosphatase 1-like n=1 Tax=Telopea specio... [more]
A0A1S3UPR7_VIGRR1.500e-2355.56dCTP pyrophosphatase 1 n=8 Tax=Phaseoleae TaxID=16... [more]
UPI0010A515C41.500e-2356.94dCTP pyrophosphatase 1-like n=1 Tax=Prosopis alba ... [more]
A0A067K5B3_JATCU1.660e-2355.56dCTP pyrophosphatase 1 n=2 Tax=Jatropha curcas Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16408contigEcto-sp13_S_contig16408:3300..3654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop0
Start0
Seed ortholog score105.9
Seed ortholog evalue8.2e-21
Seed eggNOG ortholog38833.XP_003061319.1
Preferred nameXTP3A
Model size225
KEGG rclassRC00002
KEGG koko:K16904
KEGG ReactionR01667,R01668
KEGG Pathwayko00240,ko01100,map00240,map01100
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.MazG-like family
EggNOG OGs2S210@2759,34MAP@3041,37UWM@33090,COG1694@1
EC3.6.1.12
Cds size225
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462863.3420813-CDS-Ecto-sp13_S_contig16408:3299..33651681462863.3420813-CDS-Ecto-sp13_S_contig16408:3299..3365Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16408 3300..3365 -
1681462863.3572295-CDS-Ecto-sp13_S_contig16408:3495..36541681462863.3572295-CDS-Ecto-sp13_S_contig16408:3495..3654Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16408 3496..3654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16408.4624.1prot_Ecto-sp13_S_contig16408.4624.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16408 3300..3654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16408.4624.1

>prot_Ecto-sp13_S_contig16408.4624.1 ID=prot_Ecto-sp13_S_contig16408.4624.1|Name=mRNA_Ecto-sp13_S_contig16408.4624.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
DRNWQKFHTPRNICLALMGEAGELSELFQFKDEDTCCQGLPLWSRDDRDK
LSQEMADVFIYITRLADLCGVDLCA
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mRNA from alignment at Ecto-sp13_S_contig16408:3300..3654-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16408.4624.1 ID=mRNA_Ecto-sp13_S_contig16408.4624.1|Name=mRNA_Ecto-sp13_S_contig16408.4624.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=355bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16408:3300..3654- (Ectocarpus species13 EcNAP12_S_4_19m)
GACAGGAACTGGCAGAAGTTCCACACTCCGCGAAACATCTGTTTAGCATT AATGGGAGAGGCGGGAGAATTGTCGGAGCTGTTCCAGTTTAAGGACGAAG ACACTTGCTGCCAAGGCTTGCCTTTGTGGAGTCGGGATGATCGCGACAAA CTCTCACAGGTGTGATGGAGGGTTTTACTCAGTTACATGAAGATTTCCCT CATTTCCCCAGCCGACCGATTCAAATTATTGTCCATGGTACAAACACGCA GCACGTTTTTCCCTCTGCTCGTAAATTGTGTTTGTCCAGGAAATGGCGGA TGTTTTCATCTATATCACTCGTCTCGCTGATTTGTGTGGCGTTGATCTAT GTGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16408:3300..3654-

>mRNA_Ecto-sp13_S_contig16408.4624.1 ID=mRNA_Ecto-sp13_S_contig16408.4624.1|Name=mRNA_Ecto-sp13_S_contig16408.4624.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16408:3300..3654- (Ectocarpus species13 EcNAP12_S_4_19m)
GACAGGAACTGGCAGAAGTTCCACACTCCGCGAAACATCTGTTTAGCATT
AATGGGAGAGGCGGGAGAATTGTCGGAGCTGTTCCAGTTTAAGGACGAAG
ACACTTGCTGCCAAGGCTTGCCTTTGTGGAGTCGGGATGATCGCGACAAA
CTCTCACAGGAAATGGCGGATGTTTTCATCTATATCACTCGTCTCGCTGA
TTTGTGTGGCGTTGATCTATGTGCG
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