mRNA_Ecto-sp13_S_contig16404.4623.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16404.4623.1
Unique NamemRNA_Ecto-sp13_S_contig16404.4623.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16404.4623.1 vs. uniprot
Match: A0A6H5K792_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K792_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 6.370e-55
Identity = 136/159 (85.53%), Postives = 139/159 (87.42%), Query Frame = 1 
Query:    7 RVTMRRREKLAESEGRSLPGQGKAARRKKGKGNKKTLAEIDGRQGGARKSGXXXXXXXXXXX-GSAFVSLSGESPSDDHDAGPSSTSRNYYNKDIANAHANPALVRRRPNWQPSSXXXXXXXXXXXXXXXXXXXXXXXXKARSSTEPGWAGADRAAGWG 480
            RVTMRRREKLAESEGRSLPGQG+ A  K+GKGNKKT A+I  RQGGARKSG            GSAFVSLSGESPSDDHDAGPSSTSRNYYNKDIANAHANPALV RRPN QPSSXXXXXXXXXXXXXXXXXXXXXXXXKARSSTEPGWAGADRAAGWG
Sbjct:  203 RVTMRRREKLAESEGRSLPGQGRGATGKQGKGNKKTPAKIHERQGGARKSGVARAAAAAATTAGSAFVSLSGESPSDDHDAGPSSTSRNYYNKDIANAHANPALVGRRPNGQPSSXXXXXXXXXXXXXXXXXXXXXXXXKARSSTEPGWAGADRAAGWG 361
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BLAST of mRNA_Ecto-sp13_S_contig16404.4623.1 vs. uniprot
Match: D8LIN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIN2_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 9.050e-23
Identity = 65/77 (84.42%), Postives = 68/77 (88.31%), Query Frame = 1 
Query:    7 RVTMRRREKLAESEGRSLPGQGKAARRKKGKGNKKTLAEIDGRQGGARKSGXXXXXXXXXXXGSAFVSLSGESPSDD 237
            RVTMRRREKLAESEGRSLPGQGKAARRK+GKGNKK  A+IDGRQGGARK+G    XXXXXXX   FVSLSGESPSDD
Sbjct:  100 RVTMRRREKLAESEGRSLPGQGKAARRKEGKGNKKNPADIDGRQGGARKNGAARAXXXXXXXXXXFVSLSGESPSDD 176
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16404.4623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K792_9PHAE6.370e-5585.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIN2_ECTSI9.050e-2384.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16404contigEcto-sp13_S_contig16404:2003..3732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size480
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_004510.1
Cds size465
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462863.273837-CDS-Ecto-sp13_S_contig16404:2002..22161681462863.273837-CDS-Ecto-sp13_S_contig16404:2002..2216Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16404 2003..2216 -
1681462863.285014-CDS-Ecto-sp13_S_contig16404:3057..31851681462863.285014-CDS-Ecto-sp13_S_contig16404:3057..3185Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16404 3058..3185 -
1681462863.2955518-CDS-Ecto-sp13_S_contig16404:3594..37171681462863.2955518-CDS-Ecto-sp13_S_contig16404:3594..3717Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16404 3595..3717 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462863.3043754-UTR-Ecto-sp13_S_contig16404:3717..37321681462863.3043754-UTR-Ecto-sp13_S_contig16404:3717..3732Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16404 3718..3732 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16404.4623.1prot_Ecto-sp13_S_contig16404.4623.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16404 2003..3717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16404.4623.1

>prot_Ecto-sp13_S_contig16404.4623.1 ID=prot_Ecto-sp13_S_contig16404.4623.1|Name=mRNA_Ecto-sp13_S_contig16404.4623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=155bp
MRRREKLAESEGRSLPGQGKAARRKKGKGNKKTLAEIDGRQGGARKSGAA
RAAAAAATAGSAFVSLSGESPSDDHDAGPSSTSRNYYNKDIANAHANPAL
VRRRPNWQPSSSSAAAAAAANNTKTSEKGSGSGGGKARSSTEPGWAGADR
AAGWG
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mRNA from alignment at Ecto-sp13_S_contig16404:2003..3732-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16404.4623.1 ID=mRNA_Ecto-sp13_S_contig16404.4623.1|Name=mRNA_Ecto-sp13_S_contig16404.4623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1730bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16404:2003..3732- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCGTAGAGTGACGATGAGGAGGAGGGAGAAATTGGCTGAGTCGGAAGG
GCGGTCTCTGCCAGGCCAAGGCAAAGCCGCAAGAAGGAAGAAGGGCAAGG
GCAACAAGAAGACGCTCGCGGAAATCGACGGGCGACAGGTAAGGAGGGTT
GGAGAAACGGAGACAGGATACGGCGACGGGGAAAGGGTGGGAGAGGAAAA
AAAAAAGTGACAAGAAGAGAGGAGTGGCGGTGGGAGAGAGATGGCGAGAC
GGGGAGAGGGAGAGGTGGCGAGACGGGGAGAGGGAGAGGTGGCGAGACGG
GGAGAGGAAGAGGTGGCGACACAGATTCAGAGTCGGAGGGAGAGGGGCGG
TCGGGCAGATGGAGACAGAACGAGCTTGAAGCTGTCACTATGGTTATCTG
CTGATGTCCTTAGAATGGTGGCCAGTAATTCCAGTCGTTTCATTTTGCTG
TGTAACTTCATCGGCACTCCTTCTCCTCCACCTCCCGCCGGCCCATCTCG
GCTCGCGTGTTGGGTCTTGGCTTGCCTGTGTGTTGTAGGCGCCGCAGGGA
GGGGCACGGAAGAGCGGGGCAGCGCGAGCCGCCGCCGCCGCCGCCACAGC
CGGCTCCGCGTTCGTATCGCTGTCGGGGGAATCTCCTAGCGATGACCACG
ACGCGGGACCAAGCAGCACAAGCAGGTACATACCGTATACAACGACAGGT
TATGTTCCGGTTACATCTTGGTGTTGGATTTTTTCTGGCATCCTGCGATT
TATGGGGTTCTGCTGACTGCCTACACCTTGTTGAGAGAAGGCAAGACGCG
ATGTTGTCGTGGGCTCCTCGAGATGATCACAGAGCGCGAGGCTGCGGGAT
TTGTGTGCGTGTGTCGTCCAAATTTCTCTGGGCTTAAAGTCTTGACGCCT
TTCCTCGTGTCTTCTACGCGCATCAACCGGGATCACACCGGAGCAAGGCC
ACACAGGACTTTATTTTCTTGTGTCGTGAGTCTGCCATTTTTTTTGGGGG
TGGGGGCGGGGATCGTGCGCGACGGCGCTAGCCGATGTAGAGATGTCACT
GACTCATGGTCAGACAACCCTCCATGGGTCGTGTTGACACGGACACGGTT
GGTTGTCCTCCGCAGGAACAGCAGTGTCGGCCGAGATTCGCTGTCTCCGC
GTCATTTTTCAGCGGCGACGCGAAATCGGAAGTTCGGATACGGGGTGGCC
TAACCCGGGCAACCACCACTCAGTTATTGTTCATTGCGTGCGTAGGAAAT
AGTGGATGTCATCGTGCTTGCTTGCCATCCACGGCGAAAACGAAATGGAG
GTCAGGGCTAGAGCGAGAAGAGCATCCGAAAAATACGAAAGTCAGTCTCA
ACAACTATTATCATTAGTCGCGAGTACGAAATCCCTTCCCCCCCCCCCAC
CCCCCTCTCGCGTATCGGAGCCTCCGGAAAGCCAGCCTCAAACTCCAAAT
ACTTTATTCGAGGGTACTGAATATCGTTCACCCCCCCTCCAACAACCTCA
CGCAATCCCTCGCCAGAAATTACTATAACAAGGACATTGCCAACGCTCAC
GCCAACCCCGCGCTGGTAAGACGGCGACCAAACTGGCAGCCGTCATCATC
ATCAGCAGCAGCGGCAGCGGCAGCCAACAACACCAAAACCAGCGAAAAAG
GAAGCGGCAGCGGCGGCGGCAAGGCACGCAGCAGCACCGAGCCTGGGTGG
GCCGGCGCCGACCGCGCCGCGGGCTGGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16404:2003..3732-

>mRNA_Ecto-sp13_S_contig16404.4623.1 ID=mRNA_Ecto-sp13_S_contig16404.4623.1|Name=mRNA_Ecto-sp13_S_contig16404.4623.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=465bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16404:2003..3732- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGAGGAGGGAGAAATTGGCTGAGTCGGAAGGGCGGTCTCTGCCAGG
CCAAGGCAAAGCCGCAAGAAGGAAGAAGGGCAAGGGCAACAAGAAGACGC
TCGCGGAAATCGACGGGCGACAGGGAGGGGCACGGAAGAGCGGGGCAGCG
CGAGCCGCCGCCGCCGCCGCCACAGCCGGCTCCGCGTTCGTATCGCTGTC
GGGGGAATCTCCTAGCGATGACCACGACGCGGGACCAAGCAGCACAAGCA
GAAATTACTATAACAAGGACATTGCCAACGCTCACGCCAACCCCGCGCTG
GTAAGACGGCGACCAAACTGGCAGCCGTCATCATCATCAGCAGCAGCGGC
AGCGGCAGCCAACAACACCAAAACCAGCGAAAAAGGAAGCGGCAGCGGCG
GCGGCAAGGCACGCAGCAGCACCGAGCCTGGGTGGGCCGGCGCCGACCGC
GCCGCGGGCTGGGGC
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