prot_Ecto-sp13_S_contig1640.4619.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1640.4619.1
Unique Nameprot_Ecto-sp13_S_contig1640.4619.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length311
Homology
BLAST of mRNA_Ecto-sp13_S_contig1640.4619.1 vs. uniprot
Match: A0A6H5KYY4_9PHAE (NPC1_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYY4_9PHAE)

HSP 1 Score: 585 bits (1508), Expect = 2.480e-210
Identity = 290/311 (93.25%), Postives = 294/311 (94.53%), Query Frame = 0
Query:    1 MPIGAGNGMGSLGRGGDKAIAVLSGVCVKIENANGTASSTQGGECRQPGRRWQRNRKTSSSSSSCERPLPTSKHALLMSMLMLTVMLTITSGRTHGGGAWCSCLVVCSFVVLRAVRMLRVFGCCRLLSFFGDMGTAAVLVHLGGVLLLLLPTVDAGQCAFTQECFQFGLDTDCTPIPAEGDTAVSFPMDSSHGFGVFHDKVWDGSVEDPSTGLCDEGRPDSDGRCIVDFVAPKGLKDVAPIVCPQYQDSGCCSWQQNYALYQNLGLLVESFGSTTGCLACAVNLVNFWCALVCSPDQGAFASMHDPPFDQA 311
            MPIGAGNGMGSLG  GDKAIAVL G  VKIENANGTAS  QG ECRQPGRRWQRNRKTSSSSS C+RP+P SKHALLMS LML VMLTITSGR HGGGAWCSCLVVCSFVVLRAVRMLRV G CRLL FFGDMGTAAVL HLGGVLLLLLPTVDAGQCAFTQECFQFGLDTDCTPIPAEGDTAVSFPMDSSHGFGVFHDKVWDGSVEDPSTGLCDEGRPDSDGRCIVDFVAPKGLKDVAPI+CPQY+DSGCCSWQQNYALYQNLGLLVESFGSTTGCLACAVNLVNFWCALVCSPDQGAFASMHDPPFDQA
Sbjct:    1 MPIGAGNGMGSLGSEGDKAIAVLYGSRVKIENANGTASLMQGEECRQPGRRWQRNRKTSSSSS-CKRPIPRSKHALLMSTLMLMVMLTITSGRMHGGGAWCSCLVVCSFVVLRAVRMLRVLGYCRLLRFFGDMGTAAVLAHLGGVLLLLLPTVDAGQCAFTQECFQFGLDTDCTPIPAEGDTAVSFPMDSSHGFGVFHDKVWDGSVEDPSTGLCDEGRPDSDGRCIVDFVAPKGLKDVAPIICPQYKDSGCCSWQQNYALYQNLGLLVESFGSTTGCLACAVNLVNFWCALVCSPDQGAFASMHDPPFDQA 310          
BLAST of mRNA_Ecto-sp13_S_contig1640.4619.1 vs. uniprot
Match: D7FMI8_ECTSI (NPC1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMI8_ECTSI)

HSP 1 Score: 406 bits (1044), Expect = 2.620e-138
Identity = 189/194 (97.42%), Postives = 191/194 (98.45%), Query Frame = 0
Query:  117 MLRVFGCCRLLSFFGDMGTAAVLVHLGGVLLLLLPTVDAGQCAFTQECFQFGLDTDCTPIPAEGDTAVSFPMDSSHGFGVFHDKVWDGSVEDPSTGLCDEGRPDSDGRCIVDFVAPKGLKDVAPIVCPQYQDSGCCSWQQNYALYQNLGLLVESFGSTTGCLACAVNLVNFWCALVCSPDQGAFASMHDPPFDQ 310
            MLR FGCCRLL FFGDMGTAAVL HLGGVLLLLLPTVDAGQCAFTQECFQFGLDTDCTPIPAEGDTAVSFPMDSSHGFGVFHDKVWDGSVE+PSTGLCDEGRPDSDGRCIVDFVAPKGLKDVAPIVCPQY+DSGCCSWQQNYALYQNLGLLVESFGSTTGCLACAVNLVNFWCALVCSPDQGAFASMHDPPFDQ
Sbjct:    1 MLRAFGCCRLLRFFGDMGTAAVLTHLGGVLLLLLPTVDAGQCAFTQECFQFGLDTDCTPIPAEGDTAVSFPMDSSHGFGVFHDKVWDGSVENPSTGLCDEGRPDSDGRCIVDFVAPKGLKDVAPIVCPQYKDSGCCSWQQNYALYQNLGLLVESFGSTTGCLACAVNLVNFWCALVCSPDQGAFASMHDPPFDQ 194          
BLAST of mRNA_Ecto-sp13_S_contig1640.4619.1 vs. uniprot
Match: A0A835YTW9_9STRA (NPC1_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTW9_9STRA)

HSP 1 Score: 210 bits (534), Expect = 4.940e-62
Identity = 94/155 (60.65%), Postives = 116/155 (74.84%), Query Frame = 0
Query:  154 DAGQCAFTQECFQFGLDTDCTPIP-AEGDTAVSFPMDSSHGFGVFHDKVWDGSVEDPSTGLCDEGRPDSDGRCIVDFVAPKGLKDVAPIVCPQYQDSGCCSWQQNYALYQNLGLLVESFGSTTGCLACAVNLVNFWCALVCSPDQGAFASMHDPP 307
            D  QC FTQ+CFQ G+DT CTP    + +++  FPM+++HGF V HD +WDGS+ D S+GLC  GRPD  GRCI  + A   L  VAPI+CPQY  +GCC+WQQNYAL+QNL  LV+SFG  TGCLACA NLVN WCALVCSP QG++ ++HDPP
Sbjct:    7 DQNQCTFTQDCFQNGVDTACTPREYTDRESSAPFPMNAAHGFNVAHDTIWDGSMADASSGLCARGRPDVQGRCIQSWDA--SLAAVAPIMCPQYAGAGCCTWQQNYALFQNLRTLVDSFGGATGCLACAANLVNLWCALVCSPQQGSYVTLHDPP 159          
BLAST of mRNA_Ecto-sp13_S_contig1640.4619.1 vs. uniprot
Match: K3X0G1_GLOUD (NPC1_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0G1_GLOUD)

HSP 1 Score: 96.7 bits (239), Expect = 4.120e-19
Identity = 64/172 (37.21%), Postives = 82/172 (47.67%), Query Frame = 0
Query:  140 VHLGGVLLLLLPTVDAGQCAFTQECFQFGLDTD---CTPIPAEGDTAVSFPMDSSHGFGVFHDKVWDGSVEDPSTGLCDEGRPDSDGRCIVDFVAPKGLKDVAPIVCPQYQDSGCCSWQQNYALYQNLGLLVESFGSTTG--CLACAVNLVNFWCALVCSPDQGAFASMHDP 306
            V L  +  LL   VDA +CA TQ C   G   D   C P  A    A   PM  +    V       G  +  S G C  G       C+ D +      ++  I CP+Y+D+ CCSWQQN A+ +N  +L  +F +  G  C ACAVNL+N WC L+CSP Q  F  MH P
Sbjct:   13 VALAALCALLTERVDA-KCAMTQTCVNPGNVPDYDACIP-EAHAVPADPQPMRGASWANVTGGGACKGDSDCNSKGSCTNGAC----ACLNDGIVAGAHCELFAIQCPEYKDAACCSWQQNQAMAENFKVLANTFANNDGGGCDACAVNLLNLWCGLMCSPHQADFMRMHLP 178          
BLAST of mRNA_Ecto-sp13_S_contig1640.4619.1 vs. uniprot
Match: A0A024U1M0_9STRA (NPC1_N domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U1M0_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.630e-15
Identity = 45/96 (46.88%), Postives = 51/96 (53.12%), Query Frame = 0
Query:  212 GLCDEGRPDSDGRCIVDFVAPKGLKDVAPIVCPQYQDSGCCSWQQNYALYQNLGLLVESFGSTTG-CLACAVNLVNFWCALVCSPDQGAFASMHDP 306
            G C        G C+    A     D A I CP+Y+D  CCSWQQN AL  N  L+   FGS  G C ACAVN++  WC LVCSP Q  F  MH P
Sbjct:   43 GACSTDADCHKGTCVDGVTAGAHCDDFA-IQCPEYKDDACCSWQQNRALAANFKLISSFFGSDGGGCDACAVNIMQLWCGLVCSPFQADFMQMHMP 137          
BLAST of mRNA_Ecto-sp13_S_contig1640.4619.1 vs. uniprot
Match: A0A8K1CL61_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CL61_PYTOL)

HSP 1 Score: 85.9 bits (211), Expect = 2.390e-15
Identity = 42/88 (47.73%), Postives = 51/88 (57.95%), Query Frame = 0
Query:  223 GRCI--VDFVAPKGLKDVAPIVCPQYQDSGCCSWQQNYALYQNLGLLVESFG--STTGCLACAVNLVNFWCALVCSPDQGAFASMHDP 306
            G C+  VD +      D   I CP+Y+D+ CCSWQQN AL QN  L+   FG  S  GC ACA NL+  WC ++CSP Q  F  MH P
Sbjct:   88 GNCVCQVDGMTAGAHCDDFAIQCPEYKDAACCSWQQNQALAQNFKLVTTIFGKNSVGGCDACATNLLELWCGMICSPRQSEFMKMHLP 175          
BLAST of mRNA_Ecto-sp13_S_contig1640.4619.1 vs. uniprot
Match: A0A3R7GWX8_9STRA (NPC1_N domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GWX8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.120e-14
Identity = 62/172 (36.05%), Postives = 80/172 (46.51%), Query Frame = 0
Query:  145 VLLLLL------PTVDAGQCAFTQECFQFGLDTD---CTPIPAEGDTAVSFPMDSSHGFGVFHDKVWDGSVEDPSTGLCDEGRPDSDGRCIV--DFVAPKGLKDVAPIVCPQYQDSGCCSWQQNYALYQNLGLLVESFG--STTGCLACAVNLVNFWCALVCSPDQGAFASM 303
            +LLLLL      PT+   +C  TQ C   G   D   C P  A  +     PM      G +   V  G+     T   D+G+     +C+   D +      +   I CP Y+D+ CCSWQQN A+ +N  LL   F   S  GC ACA NL+N WC LVCSP+Q  F  M
Sbjct:    6 LLLLLLAAYTHAPTLVEAKCVMTQTCVNPGNVPDYDACIP-EAHKEPVNPEPMTG----GEWPSVVGGGNCSSAKTDCNDKGQC-VHNKCVCRQDGMTAGPHCNQFAIQCPAYRDNACCSWQQNQAMAENFQLLANVFAKNSAGGCDACAANLMNLWCGLVCSPEQDKFMQM 171          
BLAST of mRNA_Ecto-sp13_S_contig1640.4619.1 vs. uniprot
Match: A0A1V9YTF7_9STRA (NPC1_N domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YTF7_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 3.850e-14
Identity = 55/175 (31.43%), Postives = 76/175 (43.43%), Query Frame = 0
Query:  145 VLLLLLPTVDAGQCAFTQECFQFGLDTD---CTPIPAEGDTAVSFPMDSSHGFGVFHDKVWDGSVEDPSTGLCDEGRPDSDGRCIVD--------FVAPKGLKDVAPIVCPQYQDSGCCSWQQNYALYQNLGLLVESFGSTT--GCLACAVNLVNFWCALVCSPDQGAFASMHDP 306
            ++ L + +V    C  TQ+C   G   D   C P  A+       PM              +G       G C+  +   +G C+ +                D A I CP+Y+DS CC+WQQN AL  N  L+   FG+    GC ACA N++  WC +VCSP+Q  F  MH P
Sbjct:   13 MIFLSISSVYGRGCVMTQDCLNPGNIPDYDDCIP-KAQASIVPPQPMQG------------EGWANVTGGGSCNTDKDCHNGACVDNACVCRKDGITGGSHCGDFA-IQCPEYKDSACCTWQQNRALADNFKLIATMFGNNKVGGCDACAANMMQMWCGIVCSPNQADFMKMHLP 173          
BLAST of mRNA_Ecto-sp13_S_contig1640.4619.1 vs. uniprot
Match: A0A2P4Y027_9STRA (NPC1_N domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y027_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 9.320e-14
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 0
Query:  241 IVCPQYQDSGCCSWQQNYALYQNLGLLVESFG--STTGCLACAVNLVNFWCALVCSPDQGAFASM 303
            I CP Y+D+ CCSWQQN A+ +N  L+   FG  S  GC ACA NL+N WC LVCSP+Q  F  M
Sbjct:  103 IQCPAYKDNACCSWQQNQAMAENFKLVASVFGKNSAGGCDACAANLMNLWCGLVCSPEQDQFLQM 167          
BLAST of mRNA_Ecto-sp13_S_contig1640.4619.1 vs. uniprot
Match: H3H0H3_PHYRM (NPC1_N domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H0H3_PHYRM)

HSP 1 Score: 80.1 bits (196), Expect = 1.040e-13
Identity = 36/68 (52.94%), Postives = 42/68 (61.76%), Query Frame = 0
Query:  241 IVCPQYQDSGCCSWQQNYALYQNLGLLVESFG--STTGCLACAVNLVNFWCALVCSPDQGAFASMHDP 306
            I CP Y+D  CCSWQQN A+ +N  L+   F   S  GC ACA NL+N WC LVCSP+Q  F  M  P
Sbjct:  104 IQCPAYKDDACCSWQQNQAMAENFKLVASVFAKNSAGGCDACAANLMNLWCGLVCSPEQDQFMQMAHP 171          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1640.4619.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5KYY4_9PHAE2.480e-21093.25NPC1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FMI8_ECTSI2.620e-13897.42NPC1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YTW9_9STRA4.940e-6260.65NPC1_N domain-containing protein n=1 Tax=Tribonema... [more]
K3X0G1_GLOUD4.120e-1937.21NPC1_N domain-containing protein n=1 Tax=Globispor... [more]
A0A024U1M0_9STRA1.630e-1546.88NPC1_N domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A8K1CL61_PYTOL2.390e-1547.73Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3R7GWX8_9STRA1.120e-1436.05NPC1_N domain-containing protein n=3 Tax=Phytophth... [more]
A0A1V9YTF7_9STRA3.850e-1431.43NPC1_N domain-containing protein n=1 Tax=Thraustot... [more]
A0A2P4Y027_9STRA9.320e-1455.38NPC1_N domain-containing protein n=1 Tax=Phytophth... [more]
H3H0H3_PHYRM1.040e-1352.94NPC1_N domain-containing protein n=1 Tax=Phytophth... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032190Niemann-Pick C1, N-terminalPFAMPF16414NPC1_Ncoord: 242..303
e-value: 4.6E-8
score: 32.9
NoneNo IPR availablePANTHERPTHR45727FAMILY NOT NAMEDcoord: 238..303
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 74..91
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 97..115
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 92..96
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 127..150
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 151..311
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..73
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 116..126
NoneNo IPR availableTMHMMTMhelixcoord: 96..115
NoneNo IPR availableTMHMMTMhelixcoord: 128..150

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1640contigEcto-sp13_S_contig1640:8223..11072 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1640.4619.1mRNA_Ecto-sp13_S_contig1640.4619.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1640 7386..11072 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1640.4619.1 ID=prot_Ecto-sp13_S_contig1640.4619.1|Name=mRNA_Ecto-sp13_S_contig1640.4619.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=311bp
MPIGAGNGMGSLGRGGDKAIAVLSGVCVKIENANGTASSTQGGECRQPGR
RWQRNRKTSSSSSSCERPLPTSKHALLMSMLMLTVMLTITSGRTHGGGAW
CSCLVVCSFVVLRAVRMLRVFGCCRLLSFFGDMGTAAVLVHLGGVLLLLL
PTVDAGQCAFTQECFQFGLDTDCTPIPAEGDTAVSFPMDSSHGFGVFHDK
VWDGSVEDPSTGLCDEGRPDSDGRCIVDFVAPKGLKDVAPIVCPQYQDSG
CCSWQQNYALYQNLGLLVESFGSTTGCLACAVNLVNFWCALVCSPDQGAF
ASMHDPPFDQA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032190NPC1_N