mRNA_Ecto-sp13_S_contig1640.4619.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1640.4619.1
Unique NamemRNA_Ecto-sp13_S_contig1640.4619.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1640.4619.1 vs. uniprot
Match: A0A6H5KYY4_9PHAE (NPC1_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYY4_9PHAE)

HSP 1 Score: 586 bits (1511), Expect = 3.610e-206
Identity = 290/311 (93.25%), Postives = 294/311 (94.53%), Query Frame = 1 
Query:  838 MPIGAGNGMGSLGRGGDKAIAVLSGVCVKIENANGTASSTQGGECRQPGRRWQRNRKTSSSSSSCERPLPTSKHALLMSMLMLTVMLTITSGRTHGGGAWCSCLVVCSFVVLRAVRMLRVFGCCRLLSFFGDMGTAAVLVHLGGVLLLLLPTVDAGQCAFTQECFQFGLDTDCTPIPAEGDTAVSFPMDSSHGFGVFHDKVWDGSVEDPSTGLCDEGRPDSDGRCIVDFVAPKGLKDVAPIVCPQYQDSGCCSWQQNYALYQNLGLLVESFGSTTGCLACAVNLVNFWCALVCSPDQGAFASMHDPPFDQA 1770
            MPIGAGNGMGSLG  GDKAIAVL G  VKIENANGTAS  QG ECRQPGRRWQRNRKTSSSSS C+RP+P SKHALLMS LML VMLTITSGR HGGGAWCSCLVVCSFVVLRAVRMLRV G CRLL FFGDMGTAAVL HLGGVLLLLLPTVDAGQCAFTQECFQFGLDTDCTPIPAEGDTAVSFPMDSSHGFGVFHDKVWDGSVEDPSTGLCDEGRPDSDGRCIVDFVAPKGLKDVAPI+CPQY+DSGCCSWQQNYALYQNLGLLVESFGSTTGCLACAVNLVNFWCALVCSPDQGAFASMHDPPFDQA
Sbjct:    1 MPIGAGNGMGSLGSEGDKAIAVLYGSRVKIENANGTASLMQGEECRQPGRRWQRNRKTSSSSS-CKRPIPRSKHALLMSTLMLMVMLTITSGRMHGGGAWCSCLVVCSFVVLRAVRMLRVLGYCRLLRFFGDMGTAAVLAHLGGVLLLLLPTVDAGQCAFTQECFQFGLDTDCTPIPAEGDTAVSFPMDSSHGFGVFHDKVWDGSVEDPSTGLCDEGRPDSDGRCIVDFVAPKGLKDVAPIICPQYKDSGCCSWQQNYALYQNLGLLVESFGSTTGCLACAVNLVNFWCALVCSPDQGAFASMHDPPFDQA 310
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1640.4619.1 vs. uniprot
Match: D7FMI8_ECTSI (NPC1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMI8_ECTSI)

HSP 1 Score: 406 bits (1044), Expect = 4.850e-134
Identity = 189/194 (97.42%), Postives = 191/194 (98.45%), Query Frame = 1 
Query: 1186 MLRVFGCCRLLSFFGDMGTAAVLVHLGGVLLLLLPTVDAGQCAFTQECFQFGLDTDCTPIPAEGDTAVSFPMDSSHGFGVFHDKVWDGSVEDPSTGLCDEGRPDSDGRCIVDFVAPKGLKDVAPIVCPQYQDSGCCSWQQNYALYQNLGLLVESFGSTTGCLACAVNLVNFWCALVCSPDQGAFASMHDPPFDQ 1767
            MLR FGCCRLL FFGDMGTAAVL HLGGVLLLLLPTVDAGQCAFTQECFQFGLDTDCTPIPAEGDTAVSFPMDSSHGFGVFHDKVWDGSVE+PSTGLCDEGRPDSDGRCIVDFVAPKGLKDVAPIVCPQY+DSGCCSWQQNYALYQNLGLLVESFGSTTGCLACAVNLVNFWCALVCSPDQGAFASMHDPPFDQ
Sbjct:    1 MLRAFGCCRLLRFFGDMGTAAVLTHLGGVLLLLLPTVDAGQCAFTQECFQFGLDTDCTPIPAEGDTAVSFPMDSSHGFGVFHDKVWDGSVENPSTGLCDEGRPDSDGRCIVDFVAPKGLKDVAPIVCPQYKDSGCCSWQQNYALYQNLGLLVESFGSTTGCLACAVNLVNFWCALVCSPDQGAFASMHDPPFDQ 194
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1640.4619.1 vs. uniprot
Match: A0A835YTW9_9STRA (NPC1_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTW9_9STRA)

HSP 1 Score: 210 bits (534), Expect = 7.700e-59
Identity = 94/155 (60.65%), Postives = 116/155 (74.84%), Query Frame = 1 
Query: 1297 DAGQCAFTQECFQFGLDTDCTPIP-AEGDTAVSFPMDSSHGFGVFHDKVWDGSVEDPSTGLCDEGRPDSDGRCIVDFVAPKGLKDVAPIVCPQYQDSGCCSWQQNYALYQNLGLLVESFGSTTGCLACAVNLVNFWCALVCSPDQGAFASMHDPP 1758
            D  QC FTQ+CFQ G+DT CTP    + +++  FPM+++HGF V HD +WDGS+ D S+GLC  GRPD  GRCI  + A   L  VAPI+CPQY  +GCC+WQQNYAL+QNL  LV+SFG  TGCLACA NLVN WCALVCSP QG++ ++HDPP
Sbjct:    7 DQNQCTFTQDCFQNGVDTACTPREYTDRESSAPFPMNAAHGFNVAHDTIWDGSMADASSGLCARGRPDVQGRCIQSWDA--SLAAVAPIMCPQYAGAGCCTWQQNYALFQNLRTLVDSFGGATGCLACAANLVNLWCALVCSPQQGSYVTLHDPP 159
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1640.4619.1 vs. uniprot
Match: K3X0G1_GLOUD (NPC1_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0G1_GLOUD)

HSP 1 Score: 96.7 bits (239), Expect = 5.560e-18
Identity = 64/172 (37.21%), Postives = 82/172 (47.67%), Query Frame = 1 
Query: 1255 VHLGGVLLLLLPTVDAGQCAFTQECFQFGLDTD---CTPIPAEGDTAVSFPMDSSHGFGVFHDKVWDGSVEDPSTGLCDEGRPDSDGRCIVDFVAPKGLKDVAPIVCPQYQDSGCCSWQQNYALYQNLGLLVESFGSTTG--CLACAVNLVNFWCALVCSPDQGAFASMHDP 1755
            V L  +  LL   VDA +CA TQ C   G   D   C P  A    A   PM  +    V       G  +  S G C  G       C+ D +      ++  I CP+Y+D+ CCSWQQN A+ +N  +L  +F +  G  C ACAVNL+N WC L+CSP Q  F  MH P
Sbjct:   13 VALAALCALLTERVDA-KCAMTQTCVNPGNVPDYDACIP-EAHAVPADPQPMRGASWANVTGGGACKGDSDCNSKGSCTNGAC----ACLNDGIVAGAHCELFAIQCPEYKDAACCSWQQNQAMAENFKVLANTFANNDGGGCDACAVNLLNLWCGLMCSPHQADFMRMHLP 178
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1640.4619.1 vs. uniprot
Match: A0A024U1M0_9STRA (NPC1_N domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U1M0_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 1.220e-14
Identity = 45/96 (46.88%), Postives = 51/96 (53.12%), Query Frame = 1 
Query: 1471 GLCDEGRPDSDGRCIVDFVAPKGLKDVAPIVCPQYQDSGCCSWQQNYALYQNLGLLVESFGSTTG-CLACAVNLVNFWCALVCSPDQGAFASMHDP 1755
            G C        G C+    A     D A I CP+Y+D  CCSWQQN AL  N  L+   FGS  G C ACAVN++  WC LVCSP Q  F  MH P
Sbjct:   43 GACSTDADCHKGTCVDGVTAGAHCDDFA-IQCPEYKDDACCSWQQNRALAANFKLISSFFGSDGGGCDACAVNIMQLWCGLVCSPFQADFMQMHMP 137
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1640.4619.1 vs. uniprot
Match: A0A8K1CL61_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CL61_PYTOL)

HSP 1 Score: 85.9 bits (211), Expect = 1.890e-14
Identity = 42/88 (47.73%), Postives = 51/88 (57.95%), Query Frame = 1 
Query: 1504 GRCI--VDFVAPKGLKDVAPIVCPQYQDSGCCSWQQNYALYQNLGLLVESFG--STTGCLACAVNLVNFWCALVCSPDQGAFASMHDP 1755
            G C+  VD +      D   I CP+Y+D+ CCSWQQN AL QN  L+   FG  S  GC ACA NL+  WC ++CSP Q  F  MH P
Sbjct:   88 GNCVCQVDGMTAGAHCDDFAIQCPEYKDAACCSWQQNQALAQNFKLVTTIFGKNSVGGCDACATNLLELWCGMICSPRQSEFMKMHLP 175
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1640.4619.1 vs. uniprot
Match: A0A3R7GWX8_9STRA (NPC1_N domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GWX8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 8.130e-14
Identity = 62/172 (36.05%), Postives = 80/172 (46.51%), Query Frame = 1 
Query: 1270 VLLLLL------PTVDAGQCAFTQECFQFGLDTD---CTPIPAEGDTAVSFPMDSSHGFGVFHDKVWDGSVEDPSTGLCDEGRPDSDGRCIV--DFVAPKGLKDVAPIVCPQYQDSGCCSWQQNYALYQNLGLLVESFG--STTGCLACAVNLVNFWCALVCSPDQGAFASM 1746
            +LLLLL      PT+   +C  TQ C   G   D   C P  A  +     PM      G +   V  G+     T   D+G+     +C+   D +      +   I CP Y+D+ CCSWQQN A+ +N  LL   F   S  GC ACA NL+N WC LVCSP+Q  F  M
Sbjct:    6 LLLLLLAAYTHAPTLVEAKCVMTQTCVNPGNVPDYDACIP-EAHKEPVNPEPMTG----GEWPSVVGGGNCSSAKTDCNDKGQC-VHNKCVCRQDGMTAGPHCNQFAIQCPAYRDNACCSWQQNQAMAENFQLLANVFAKNSAGGCDACAANLMNLWCGLVCSPEQDKFMQM 171
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1640.4619.1 vs. uniprot
Match: A0A1V9YTF7_9STRA (NPC1_N domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YTF7_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.630e-13
Identity = 55/175 (31.43%), Postives = 76/175 (43.43%), Query Frame = 1 
Query: 1270 VLLLLLPTVDAGQCAFTQECFQFGLDTD---CTPIPAEGDTAVSFPMDSSHGFGVFHDKVWDGSVEDPSTGLCDEGRPDSDGRCIVD--------FVAPKGLKDVAPIVCPQYQDSGCCSWQQNYALYQNLGLLVESFGSTT--GCLACAVNLVNFWCALVCSPDQGAFASMHDP 1755
            ++ L + +V    C  TQ+C   G   D   C P  A+       PM              +G       G C+  +   +G C+ +                D A I CP+Y+DS CC+WQQN AL  N  L+   FG+    GC ACA N++  WC +VCSP+Q  F  MH P
Sbjct:   13 MIFLSISSVYGRGCVMTQDCLNPGNIPDYDDCIP-KAQASIVPPQPMQG------------EGWANVTGGGSCNTDKDCHNGACVDNACVCRKDGITGGSHCGDFA-IQCPEYKDSACCTWQQNRALADNFKLIATMFGNNKVGGCDACAANMMQMWCGIVCSPNQADFMKMHLP 173
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1640.4619.1 vs. uniprot
Match: H3H0H3_PHYRM (NPC1_N domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H0H3_PHYRM)

HSP 1 Score: 80.1 bits (196), Expect = 5.660e-13
Identity = 36/68 (52.94%), Postives = 42/68 (61.76%), Query Frame = 1 
Query: 1558 IVCPQYQDSGCCSWQQNYALYQNLGLLVESFG--STTGCLACAVNLVNFWCALVCSPDQGAFASMHDP 1755
            I CP Y+D  CCSWQQN A+ +N  L+   F   S  GC ACA NL+N WC LVCSP+Q  F  M  P
Sbjct:  104 IQCPAYKDDACCSWQQNQAMAENFKLVASVFAKNSAGGCDACAANLMNLWCGLVCSPEQDQFMQMAHP 171
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1640.4619.1 vs. uniprot
Match: A0A2P4Y027_9STRA (NPC1_N domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y027_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 6.020e-13
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 1 
Query: 1558 IVCPQYQDSGCCSWQQNYALYQNLGLLVESFG--STTGCLACAVNLVNFWCALVCSPDQGAFASM 1746
            I CP Y+D+ CCSWQQN A+ +N  L+   FG  S  GC ACA NL+N WC LVCSP+Q  F  M
Sbjct:  103 IQCPAYKDNACCSWQQNQAMAENFKLVASVFGKNSAGGCDACAANLMNLWCGLVCSPEQDQFLQM 167
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1640.4619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5KYY4_9PHAE3.610e-20693.25NPC1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FMI8_ECTSI4.850e-13497.42NPC1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YTW9_9STRA7.700e-5960.65NPC1_N domain-containing protein n=1 Tax=Tribonema... [more]
K3X0G1_GLOUD5.560e-1837.21NPC1_N domain-containing protein n=1 Tax=Globispor... [more]
A0A024U1M0_9STRA1.220e-1446.88NPC1_N domain-containing protein n=1 Tax=Aphanomyc... [more]
A0A8K1CL61_PYTOL1.890e-1447.73Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3R7GWX8_9STRA8.130e-1436.05NPC1_N domain-containing protein n=3 Tax=Phytophth... [more]
A0A1V9YTF7_9STRA2.630e-1331.43NPC1_N domain-containing protein n=1 Tax=Thraustot... [more]
H3H0H3_PHYRM5.660e-1352.94NPC1_N domain-containing protein n=1 Tax=Phytophth... [more]
A0A2P4Y027_9STRA6.020e-1355.38NPC1_N domain-containing protein n=1 Tax=Phytophth... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1640contigEcto-sp13_S_contig1640:7386..11072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score407.9
Seed ortholog evalue4.2e-111
Seed eggNOG ortholog2880.D7FMI8
Model size1771
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Niemann-Pick C1 N terminus
EggNOG OGs28I52@1,2QQFF@2759
Cds size933
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462862.9911907-UTR-Ecto-sp13_S_contig1640:7385..82221681462862.9911907-UTR-Ecto-sp13_S_contig1640:7385..8222Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1640 7386..8222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462863.0053387-CDS-Ecto-sp13_S_contig1640:8222..87081681462863.0053387-CDS-Ecto-sp13_S_contig1640:8222..8708Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1640 8223..8708 +
1681462863.019607-CDS-Ecto-sp13_S_contig1640:9180..93651681462863.019607-CDS-Ecto-sp13_S_contig1640:9180..9365Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1640 9181..9365 +
1681462863.028606-CDS-Ecto-sp13_S_contig1640:10167..103051681462863.028606-CDS-Ecto-sp13_S_contig1640:10167..10305Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1640 10168..10305 +
1681462863.0380962-CDS-Ecto-sp13_S_contig1640:10948..110721681462863.0380962-CDS-Ecto-sp13_S_contig1640:10948..11072Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1640 10949..11072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1640.4619.1prot_Ecto-sp13_S_contig1640.4619.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1640 8223..11072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1640.4619.1

>prot_Ecto-sp13_S_contig1640.4619.1 ID=prot_Ecto-sp13_S_contig1640.4619.1|Name=mRNA_Ecto-sp13_S_contig1640.4619.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=311bp
MPIGAGNGMGSLGRGGDKAIAVLSGVCVKIENANGTASSTQGGECRQPGR
RWQRNRKTSSSSSSCERPLPTSKHALLMSMLMLTVMLTITSGRTHGGGAW
CSCLVVCSFVVLRAVRMLRVFGCCRLLSFFGDMGTAAVLVHLGGVLLLLL
PTVDAGQCAFTQECFQFGLDTDCTPIPAEGDTAVSFPMDSSHGFGVFHDK
VWDGSVEDPSTGLCDEGRPDSDGRCIVDFVAPKGLKDVAPIVCPQYQDSG
CCSWQQNYALYQNLGLLVESFGSTTGCLACAVNLVNFWCALVCSPDQGAF
ASMHDPPFDQA
back to top

mRNA from alignment at Ecto-sp13_S_contig1640:7386..11072+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1640.4619.1 ID=mRNA_Ecto-sp13_S_contig1640.4619.1|Name=mRNA_Ecto-sp13_S_contig1640.4619.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3687bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1640:7386..11072+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATACCCCTTTTTTGTCCAGGGGTGACGCTCCTCCCTCCGACTGCCAAAA
TGGCAAACAACAATCAACCGTAGATCATACGTAGGTGTGGCGACAGAAAA
TGTTGGGGTATAGTGGTCTGCGGTACAATTTGCAGGTTTCGCGGTCTGCG
GCGCGGCAAGAAGACTAACAATGTTGAGGTATCCTGGACTGCGGTCCAAC
AAACAGGCTTTGTTGCGGTCTGCGGCGAGGCAAGGAGATAGCAGATACAG
AGATATGGTGGTCTGCGGTTGATTGTTGGTTGCCGTTTTGGCAGTTCGCA
GGAACGTCAACACTTCACACCAGGGGTATGCCTTGAACAGTATGGGGTAC
GTTTGTGAACAAAATGGACTACGATATAAAACTTTTGGCAGACATGGGGA
TGTACCCCGCGGTTTCGTGAACAAAATGGGGTCCTCCAACAACCTCAAGT
CTCAAACGCCCTGGTTAACCGTGTTCCTGTGGGTGATAATAAACAAAGAT
GGGCGTCCTTCCTAAGAATCTGGCGCATAGAGCTGAAGCGCTACAAGGCG
GTCAAAGGAGCCTACCCGGCGTCAGGCGTTGCGCCCCACACCGAAAAAGG
AATACCCCGTCTTGTGCCCAAACACTTGGGGCAAACCTCATTTTGTCAAT
TGCCCTTTAGTATTTACATCTCGCTGCCTAGCCTCCCAGCCATCGTGTTC
ACCAGATAATGCATCAAAAATCTCGAGTTTCGATGCACTAAAACTTTGAC
GTTTGGTCTGTTCGGAAGACGAGGGCTGGGCGGCTCGAGCCGTGACGATC
ACGCTGTTGTTGTCAGAGGCAGAGTACACTGACAAGCATGCCGATTGGGG
CGGGCAACGGCATGGGATCGCTGGGAAGAGGAGGTGATAAGGCGATAGCT
GTGCTTTCTGGGGTTTGTGTCAAGATCGAAAACGCGAACGGCACTGCTAG
CTCAACGCAGGGAGGGGAATGCCGGCAACCAGGAAGACGCTGGCAGAGGA
ACCGCAAGACGTCATCATCATCATCATCATGCGAGCGGCCATTACCAACA
TCAAAACACGCCTTGTTGATGTCAATGTTGATGCTGACGGTCATGCTGAC
GATAACTTCCGGTCGAACGCACGGGGGAGGAGCATGGTGTTCGTGTCTAG
TCGTCTGTTCGTTTGTGGTGTTGAGAGCCGTGAGGATGCTCAGGGTGTTC
GGCTGTTGCCGTCTGCTGAGCTTCTTCGGCGACATGGGGACAGCGGCGGT
TTTGGTTCATCTCGGGGGCGTCCTCCTACTGCTGCTGCCTACGGTGGACG
CCGGACAATGCGCCTTTACGCAGGTAGGACTTAGGATTAATGAGAACACG
TTGGTGGTGGTATCACAGGAGAGCTCGAAGTTGGTGTTAGCTCCGACGCG
CCAAACCAAGCACGGATACACGCGGTTTTCTCTCGAAATATCCACCGAAA
AGTGGCACGAACACAAGAGTTCCCCAGGGGAAGAAAACAGGAGGGGGGGA
AAGAATAACGAATGAACCAATAGGACACGCCGACGTTTTATGCCTGGGAG
CGGCATACGGAACAGACGCATACGTGTGTTCGCTTCGAAGGATTCGTGTG
TTGGCGCAGATCCTCAGCAAGAACACATTCTCCCGTGAACATGTTTTGTC
TTAAGACACCGATGCAATGGTCCTGATTAGAGAGAATGACCGGCAGCGCT
TGTTTTTCCTTGCACCCAGTCGGTGGAGGGTGTGCCTCCGAACCGTGATG
TCTCGAGCCATCTCTTACTTGCTTCCTCGGCTAATTTTGGCACAGGAGTG
CTTTCAGTTCGGGCTCGACACCGACTGCACCCCCATCCCAGCGGAAGGGG
ACACGGCCGTATCGTTTCCCATGGATAGCTCTCACGGCTTCGGCGTTTTT
CACGACAAAGTCTGGGACGGGTCTGTTGAAGACCCATCGACTGGCCTATG
CGACGAAGGAAGGCCAGATTCAGACGGAAGGTTCGTCCGACCTTGTCATT
GGTTTGGCCAGGCTACTCAATCGCTCCCGCACTAATTTCGCTGCTTACTT
TGTGTTGCGCCCTTCGCTTTTGACACGAGGAGATGGCCCATGCTACTTTG
CGCCCGCCTAGGCTAGTTGTTGTTTCCTCCCCCCTCCGTCCGTCCTCCTG
CCCAACCGCAGAACGACATAATCCCCTGTCTTGCTAAATAGTAGTGATGC
TGCAAACACTGCTGTCGTACAATGTAATCTAACCTATTGATTGACTCAAA
CGATAACAAAAAATCAATTACATACGGACGCACGTCTTTTCATGCGGCTC
TGAGCTACCTCGCGTAAGTAGCAACAAGAAAAATTATCCATATACATACC
TGACCCAGGCCATGCCATGCACACAATGCAGACGCTAAGAACTGGACGCG
GCCGTCAGCGCTGCGGTTGGTGATGTAGCACTGGTGGTGGTGTTGCTTCT
AGCACTACCAATAGTATCGCATGCAAGAGTGCAGCAAGTGCTATCCAAGC
GCTTGTCACACCGCAGTTCATCTCAAGCAACGCGTTTAGCTACGTACGAC
ATATTCACCTATCAACTGCAGCAATGTGTAACCACACCAATAGTGCTGAT
CCAATACGTGACGCTGAAAGATCGCTGCTGATTCATTCGTTTGTTAGTCT
GGCCACGCCACGCGGTAGCAGTAGCTTCGACGAAAAGTGTGGCATATCGA
ACGCCGGACGCATCAGCGGTTTCGACTCCTCTTTTACTCGATGAAGAGAA
CTGATGCTACACTCCATTTATCCTGATGACAGGTGCATCGTGGACTTCGT
CGCTCCAAAGGGCCTGAAAGACGTGGCGCCCATCGTCTGCCCACAATATC
AAGATAGCGGATGCTGCAGCTGGCAACAGAACTACGCCCTCTACCAGAAC
CTGGGTTTGCTCGTGGAGAGGTACGTAGCATAGGAGGGTCAAGATGGGAA
TGACAGCATCGATGCTGTACTATTACTAGCAGGGCAGGCAGCGCACCCAC
GGAGATATAGCGACACTTGTATACTCCGAAGATAAGGCGATCAGTATCGC
AGGTTACCTTTCTAGGCGGACGTGTTGAAGCGTCGTGTGTGCCACATTCG
CATGCTTGGCAGAAAAGGTGTCCATCTGGCAAAGTGTTTTCCCATGTGGC
GTTTGGTGTGAACGGGTTCCCTCGGGTGAGAGAAGAGCGTTCATGCTTTG
TCCCTCCGTACGTGTGGTCGCCCGGGATGTCAGCGTAACTGATTAAACAT
TTGCTTCAAGACGACCGTGTGGATATTCCTCGAATTTTCGCTCCTAACCT
TACTGTGTAAACGCGAGCTTTTGAGTGTTGACGTATTTCATTGCGTCGTT
CGTTTCCGGTCTTTTTCATATTCAGATCATGCTGTTGCTTCTTGCTGCCT
TCTCACAGGATAAAGTGTCTTTTGGGCACTATCGCTCTCTGCGGCGTGCC
GTTGGACTGCCGCTTACAGCTAGCTATGCACTTATCACGCTGCTGCTACT
GCTGGCAAATCTCACCTTGGTCCGCCGCCTCCACTCTTCGCCCCCTCCTT
GCCTTTCTTACAGCTTCGGGTCTACGACAGGCTGCCTGGCCTGTGCCGTT
AACTTGGTCAACTTTTGGTGCGCTTTGGTTTGCTCACCGGACCAAGGGGC
CTTCGCTTCCATGCATGACCCACCCTTCGATCAGGCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1640:7386..11072+

>mRNA_Ecto-sp13_S_contig1640.4619.1 ID=mRNA_Ecto-sp13_S_contig1640.4619.1|Name=mRNA_Ecto-sp13_S_contig1640.4619.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=933bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1640:7386..11072+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGATTGGGGCGGGCAACGGCATGGGATCGCTGGGAAGAGGAGGTGA
TAAGGCGATAGCTGTGCTTTCTGGGGTTTGTGTCAAGATCGAAAACGCGA
ACGGCACTGCTAGCTCAACGCAGGGAGGGGAATGCCGGCAACCAGGAAGA
CGCTGGCAGAGGAACCGCAAGACGTCATCATCATCATCATCATGCGAGCG
GCCATTACCAACATCAAAACACGCCTTGTTGATGTCAATGTTGATGCTGA
CGGTCATGCTGACGATAACTTCCGGTCGAACGCACGGGGGAGGAGCATGG
TGTTCGTGTCTAGTCGTCTGTTCGTTTGTGGTGTTGAGAGCCGTGAGGAT
GCTCAGGGTGTTCGGCTGTTGCCGTCTGCTGAGCTTCTTCGGCGACATGG
GGACAGCGGCGGTTTTGGTTCATCTCGGGGGCGTCCTCCTACTGCTGCTG
CCTACGGTGGACGCCGGACAATGCGCCTTTACGCAGGAGTGCTTTCAGTT
CGGGCTCGACACCGACTGCACCCCCATCCCAGCGGAAGGGGACACGGCCG
TATCGTTTCCCATGGATAGCTCTCACGGCTTCGGCGTTTTTCACGACAAA
GTCTGGGACGGGTCTGTTGAAGACCCATCGACTGGCCTATGCGACGAAGG
AAGGCCAGATTCAGACGGAAGGTGCATCGTGGACTTCGTCGCTCCAAAGG
GCCTGAAAGACGTGGCGCCCATCGTCTGCCCACAATATCAAGATAGCGGA
TGCTGCAGCTGGCAACAGAACTACGCCCTCTACCAGAACCTGGGTTTGCT
CGTGGAGAGCTTCGGGTCTACGACAGGCTGCCTGGCCTGTGCCGTTAACT
TGGTCAACTTTTGGTGCGCTTTGGTTTGCTCACCGGACCAAGGGGCCTTC
GCTTCCATGCATGACCCACCCTTCGATCAGGCG
back to top