mRNA_Ecto-sp13_S_contig164.4613.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig164.4613.1 vs. uniprot
Match: A0A6H5JS08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS08_9PHAE) HSP 1 Score: 887 bits (2291), Expect = 0.000e+0 Identity = 450/500 (90.00%), Postives = 460/500 (92.00%), Query Frame = 1
Query: 1 MGRNKELNKLRKRNNSDRXXXXXXXXXXXXXXXXXXXXXXXXXXXKRGKFRKLLTFIAAYPFVAITLAAVLPRAALPSMKWMRLRSGLMGPVVEVHEEKQVLIVGSLGSGTSEISAALTRLGLEVGHETSDSKNERCRDGTISWAHGIRFLSGTPNLSLLCAAPRRHAFSSTMFQPSSECSYLFRSWDQCWEDECREVTKREYGCALRQRARDAEAKAEKELEARERGKQSPATLGRSSSKGKRRRKGRDQWDMEAMIESGDWPDGESAWQEGGEEAQECGTNFRRHLLQVRHPLQTIAWLVYKSAGKNKEGVGTDCRAGRQHLVTASSLLTNKFIRTQLGAGGNGAFSDFDWARVANSCVQTWAWYWVVYNRAMLQGVDKWYRVEDTPASQIAAMAGFSSLTIAEALQDFESAPDDEAGVGQVMTSNPTGFEITWEDIASFPGGLLQEVSDLAVELGYEAAPGLAREAEKISAGDGGSGEGGVRDGRAKRGWRGLFGKR 1500
MGRNKELNKLRKRNN +R KRG FRKLLTFIAAYPFVAITLAAVLPRAALPSMKWMRLRSGLMGPVVEVHEEKQVLIVGSLGSGTSEISAALTRLGLEVGHETSDSKNERCRDGTISWAHGIRFLSGTPNLSLLCAAPRR AFSSTMFQPSSECSYLFRSWDQCW DECREVTKREYGCALRQRA DAEAKAEKELEARERGKQSPATLGRSSS+GKRRRK RDQWDMEAMIESGDWPDGESAWQEGGEEAQECGT FRRHLLQVRHPLQTIAWLVYKSAGKNKEGVG DCRAGRQHL+TASSLLTNKFIRTQLGAGGNGAFSDFDWARVANSCV+TWAWYWVVYNRAMLQGVDKWYRVEDTPASQIAAMAGFSS+TIAE+LQ+ ESAPD+EAGVGQVMTSNPTGFE+TWE+IASFPGGLLQEVSDLAVELGYEAAPGLAREAEK S DGGSGEGGVRDG AKRGWRGLFGKR
Sbjct: 1 MGRNKELNKLRKRNNLERNGSSSNGRSSVIAATSDTAGGSARGEEKRGNFRKLLTFIAAYPFVAITLAAVLPRAALPSMKWMRLRSGLMGPVVEVHEEKQVLIVGSLGSGTSEISAALTRLGLEVGHETSDSKNERCRDGTISWAHGIRFLSGTPNLSLLCAAPRRQAFSSTMFQPSSECSYLFRSWDQCWVDECREVTKREYGCALRQRATDAEAKAEKELEARERGKQSPATLGRSSSRGKRRRKERDQWDMEAMIESGDWPDGESAWQEGGEEAQECGTTFRRHLLQVRHPLQTIAWLVYKSAGKNKEGVGNDCRAGRQHLITASSLLTNKFIRTQLGAGGNGAFSDFDWARVANSCVETWAWYWVVYNRAMLQGVDKWYRVEDTPASQIAAMAGFSSVTIAESLQNSESAPDEEAGVGQVMTSNPTGFEVTWEEIASFPGGLLQEVSDLAVELGYEAAPGLAREAEKTSTIDGGSGEGGVRDGGAKRGWRGLFGKR 500
BLAST of mRNA_Ecto-sp13_S_contig164.4613.1 vs. uniprot
Match: D7G4U5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4U5_ECTSI) HSP 1 Score: 622 bits (1603), Expect = 1.400e-215 Identity = 308/328 (93.90%), Postives = 316/328 (96.34%), Query Frame = 1
Query: 517 MFQPSSECSYLFRSWDQCWEDECREVTKREYGCALRQRARDAEAKAEKELEARERGKQSPATLGRSSSKGKRRRKGRDQWDMEAMIESGDWPDGESAWQEGGEEAQECGTNFRRHLLQVRHPLQTIAWLVYKSAGKNKEGVGTDCRAGRQHLVTASSLLTNKFIRTQLGAGGNGAFSDFDWARVANSCVQTWAWYWVVYNRAMLQGVDKWYRVEDTPASQIAAMAGFSSLTIAEALQDFESAPDDEAGVGQVMTSNPTGFEITWEDIASFPGGLLQEVSDLAVELGYEAAPGLAREAEKISAGDGGSGEGGVRDGRAKRGWRGLFGKR 1500
MFQPSSECSYLFR WDQCWEDECREVTKREYGCALRQRARDA+AKAE ELEARERGKQS TLGRSSS+GKRRRK RDQWDMEAMIESGDWPDGESAWQEGGEEAQECGT FRRHLLQVRHPLQTIAWLVYKSAGKNKEGVGTDC AGRQHL+TASSLLTNKFIRTQLGAGGNGAFSDFDWARVA+SCVQTWAWYWVVYNRAMLQGVDKWYRVEDTPASQIAAMAGFSS+TIAEALQ+ ESAPDDEAGVGQVMTSNPTGFE+TW +IASFPGGLLQEVSDLAVELGYEAAPGLAREAEK SA DGGSGEGGVRDG AKRGWRGLFGKR
Sbjct: 1 MFQPSSECSYLFRFWDQCWEDECREVTKREYGCALRQRARDADAKAENELEARERGKQSTGTLGRSSSRGKRRRKERDQWDMEAMIESGDWPDGESAWQEGGEEAQECGTTFRRHLLQVRHPLQTIAWLVYKSAGKNKEGVGTDCGAGRQHLITASSLLTNKFIRTQLGAGGNGAFSDFDWARVASSCVQTWAWYWVVYNRAMLQGVDKWYRVEDTPASQIAAMAGFSSVTIAEALQESESAPDDEAGVGQVMTSNPTGFEVTWAEIASFPGGLLQEVSDLAVELGYEAAPGLAREAEKTSASDGGSGEGGVRDGGAKRGWRGLFGKR 328
BLAST of mRNA_Ecto-sp13_S_contig164.4613.1 vs. uniprot
Match: D7G4U6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4U6_ECTSI) HSP 1 Score: 202 bits (514), Expect = 1.850e-57 Identity = 101/106 (95.28%), Postives = 103/106 (97.17%), Query Frame = 1
Query: 136 KRGKFRKLLTFIAAYPFVAITLAAVLPRAALPSMKWMRLRSGLMGPVVEVHEEKQVLIVGSLGSGTSEISAALTRLGLEVGHETSDSKNERCRDGTISWAHGIRFL 453
KRGKFRKL TFIAAYPFVAITLAAVLPRA LPSMKWMRLRSGLM PVVEVHE+KQVLIVGSLGSGTS+ISAALTRLGLEVGHETSDSKNERCRDGTISWAHGIRFL
Sbjct: 14 KRGKFRKLFTFIAAYPFVAITLAAVLPRAVLPSMKWMRLRSGLMRPVVEVHEKKQVLIVGSLGSGTSDISAALTRLGLEVGHETSDSKNERCRDGTISWAHGIRFL 119
BLAST of mRNA_Ecto-sp13_S_contig164.4613.1 vs. uniprot
Match: A0A8J5XST6_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XST6_DIALT) HSP 1 Score: 130 bits (327), Expect = 3.920e-29 Identity = 69/153 (45.10%), Postives = 91/153 (59.48%), Query Frame = 1
Query: 175 AYPFVAITLAAVLPRAALPSMKWMRLRSGLMGPVVEVHEEKQVLIVGSLGSGTSEISAALTRLGLEVGHETSDSKNERCRDGTISWAHGIRFLSGTP---NLSLLCAAPRRH-AFSSTMFQPSSECSYLFRSWDQCWEDECREVTKREYGCAL 621
A A+TL +P A + W+ L SG + P V E +Q+LIVGS SGT + SA+L LG EV HE SD+ CRDGT+SW HGIRFL G ++ L+CA R+ F F+ S+ CSY R+WD CW EC E+ + E+GCA+
Sbjct: 40 ARDLTALTLLIAVPYAVYSAYLWVHLESGWLRPPVGHGESRQLLIVGSQSSGTVQTSASLATLGFEVAHEASDASTTFCRDGTVSWFHGIRFLPGIAPDESVELICARSLRNMGFHPAGFRRSTSCSYR-RTWDACWARECGEIIRSEWGCAI 191
BLAST of mRNA_Ecto-sp13_S_contig164.4613.1 vs. uniprot
Match: A0A5J4YQS4_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YQS4_PORPP) HSP 1 Score: 126 bits (316), Expect = 1.730e-27 Identity = 81/256 (31.64%), Postives = 110/256 (42.97%), Query Frame = 1
Query: 187 VAITLAAVLPRAALPSMKWMRLRSGLMGPVVEVHEEKQVLIVGSLGSGTSEISAALTRLGLEVGHETSDSKNERCRDGTISWAHGIRFL----SGTPNLSLLCAAPRRHAFSSTMFQPSSECSYLFRS-WDQCWEDECREVTKREYGCALRQRARDAEAKAEKELEARERGKQSPATLGRSSSKGKRRRKGRDQWDMEAMIESGDWPDGESAWQEGGEEAQECGTNFRRHLLQVRHPLQTIAWLVYK---SAGKNK 930
V IT V P + +W+ L+SG + P +EV +QVLI G GSGT++ +A L LG+EV HE+SD+KN CRDGT+SW HG+ L ++ +LC PR + ST F+P E R W CW EC V + +GC LR +C T F +LLQ+RHPL+ IA LV K +AGK++
Sbjct: 44 VLITALVVGPYVGMRGYEWVHLKSGWVRPALEVGHARQVLIFGVQGSGTTQTTARLVHLGIEVAHESSDAKNTYCRDGTVSWVHGMMALPPPSDHEKSVKVLCEKPRPNILHSTQFEPPDEAKCSTRVLWSTCWRQECERVMRLYHGCLLR---------------------------------------------------------------------NDCPTRFSSYLLQIRHPLKNIASLVVKFCKTAGKHE 230
BLAST of mRNA_Ecto-sp13_S_contig164.4613.1 vs. uniprot
Match: C1N5B0_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N5B0_MICPC) HSP 1 Score: 125 bits (313), Expect = 7.610e-27 Identity = 70/161 (43.48%), Postives = 95/161 (59.01%), Query Frame = 1
Query: 151 RKLLTFIAAYPFVAITLAAVLPRAALPSMKWMRLRSGLMGPVVEVHEEKQVLIVGSLGSGTSEISAALTRLGLEVGHETSDSKNERCRDGTISWAHGIRFLSGTPNLSL---LCAAPRRH-AFSSTMFQPSS-ECSYLFRSWDQCWEDECREVTKREYGCA 618
R+ + A F ITL P A S W+RL+SGL+ V V + VLIVG+ SGT+++SA L ++GLEV HETSD++ E RDGTISW H +RF+ G +L+ C+ RR F MF P CSY ++WD CW +C + +RE+GCA
Sbjct: 82 RRFVALAAWKRFALITLVVAGPYALYVSYLWIRLQSGLLRAPVRVATPRAVLIVGTQSSGTTQMSAELGKIGLEVAHETSDAQWEFARDGTISWLHALRFMPGRADLAFTTAFCSRFRRSMGFHPAMFGPPELGCSYR-KTWDDCWRTQCGVIARREWGCA 241
BLAST of mRNA_Ecto-sp13_S_contig164.4613.1 vs. uniprot
Match: A0A7S1SKM8_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SKM8_9CHLO) HSP 1 Score: 123 bits (308), Expect = 1.650e-26 Identity = 59/145 (40.69%), Postives = 83/145 (57.24%), Query Frame = 1
Query: 193 ITLAAVLPRAALPSMKWMRLRSGLMGPVVEVHEEKQVLIVGSLGSGTSEISAALTRLGLEVGHETSDSKNERCRDGTISWAHGIRFLSGTPNLS----LLCAAPRRHAFSSTMFQPSSECSYLFRSWDQCWEDECREVTKREYGC 615
+T ++PRA + L +G P V + EE+ +LIVG++ SGT ++ L RLG+E+GHE SD+ + RDGT+SW HG+RFL +C PR + F TMF+PS+ CSY F W CW EC + E+GC
Sbjct: 60 LTAVVLVPRACVVGYYHACLHAGWDRPAVALEEERPLLIVGTMASGTKQMVVELGRLGIEMGHENSDTTSHFARDGTVSWTHGLRFLPTAERSDDATRRMCRHPRFNCFHPTMFRPSANCSYRFTLWSDCWRRECAALWDAEFGC 204
BLAST of mRNA_Ecto-sp13_S_contig164.4613.1 vs. uniprot
Match: A0A7S4B6C3_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B6C3_CHRCT) HSP 1 Score: 123 bits (308), Expect = 1.960e-26 Identity = 103/354 (29.10%), Postives = 153/354 (43.22%), Query Frame = 1
Query: 190 AITLAAVLPRAALPSMKWMRLRSGLMGPVVEVHEEKQVLIVGSLGSGTSEISAALTRLGLEVGHETSDSKNERCRDGTISWAHGIRFLSGTP---NLSLLCAAPRRH-AFSSTMFQPS-SECSYLFRSWDQCWEDECREVTKREYGCALRQRARDAEAKAEKELEARERGKQSPATLG-----RSSSKGKRRRKGRDQWDMEAMIESGDWPDGESAWQEGGEEAQECGTNFRRHLLQVRHPLQTIAWLVYKSAGKNKEGVGTDCRAGRQHLVTASSLLTNKFIRTQLGAGGNGAFSDFDWARVANSCVQTWAWYWVVYNRAMLQG-----VDKWYRVEDTPASQIAAMAGFSSL 1206
AIT+A LP + ++ L+SG + P + + + + +L+VG+ SGT+ I+A L LGLEVGHE SD+ RDGT+SW HG+RFL G ++ ++C RR+ F MF+P CSY WD CW EC + E+GCA R D E E L ++ +L R+++K A +G + A + GE A G + R GR H + L T L S F W + C T W+W++Y R+ML+ +D Y++E+ +IAA AGF ++
Sbjct: 13 AITVAVTLPYVLWLAYLYIHLQSGWLRPPLAITDSRPLLVVGTQSSGTNSITAELKALGLEVGHEVSDTVWSFSRDGTVSWLHGLRFLPGNAPQRSIEIMCEQSRRNMGFHPAMFRPPHGGCSYR-SEWDDCWRSECASLLASEWGCAARG---DCETPFETSLLQLRHPLRTAESLAVKFCARATAK--------------AAKSAGKGAPAKGAGKGAGESAXXXXXXXXXXXXXXXXXXXXXXXATSTERG--------EARLGRPHGYLVAFL-------TSLWP------SHFGWE--THGCADTVGWFWLLYTRSMLEAKERGLIDGDYKIEEASPCEIAARAGFGAV 325
BLAST of mRNA_Ecto-sp13_S_contig164.4613.1 vs. uniprot
Match: C1FI65_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FI65_MICCC) HSP 1 Score: 121 bits (303), Expect = 1.180e-25 Identity = 68/149 (45.64%), Postives = 89/149 (59.73%), Query Frame = 1
Query: 193 ITLAAVLPRAALPSMKWMRLRSGLMGPVVEVHEEKQVLIVGSLGSGTSEISAALTRLGLEVGHETSDSKNERCRDGTISWAHGIRFLSGTP---NLSLLCAAPRRH-AFSSTMFQ-PSSECSYLFRSWDQCWEDECREVTKREYGCALR 624
ITL V P A W L+SGL+ P V V + VLIVG+ SGT+++S L R+GLEVGHETSD+ + RDGTISW HG+RF+ G ++ LC RR+ F+ P+ CSY +WD+CW EC + RE+GCA R
Sbjct: 69 ITLVVVGPYVAWVCYLWFHLQSGLLRPRVPVDHPRPVLIVGTQSSGTTQMSHQLARIGLEVGHETSDATWDFARDGTISWLHGMRFMPGRAPPATIAQLCRRFRRNMGLHPAQFRSPALGCSYR-STWDKCWSAECAGIVTREWGCAAR 216
BLAST of mRNA_Ecto-sp13_S_contig164.4613.1 vs. uniprot
Match: A0A7S0NKU6_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NKU6_MICPS) HSP 1 Score: 118 bits (296), Expect = 1.650e-25 Identity = 66/149 (44.30%), Postives = 88/149 (59.06%), Query Frame = 1
Query: 193 ITLAAVLPRAALPSMKWMRLRSGLMGPVVEVHEEKQVLIVGSLGSGTSEISAALTRLGLEVGHETSDSKNERCRDGTISWAHGIRFLSGTP---NLSLLCAAPRRH-AFSSTMFQ-PSSECSYLFRSWDQCWEDECREVTKREYGCALR 624
ITL P A W L+SGL+ P V V + VLIVG+ SGT+++S L R+GLEVGHETSD+ + RDGTISW HG+RF+ G ++ +C RR+ + F+ P+ CSY +WD CW EC + RE+GCA R
Sbjct: 10 ITLVVAGPYVAWVCYLWFHLQSGLLRPRVAVDHPRPVLIVGTQSSGTTQMSHQLARIGLEVGHETSDATWDFARDGTISWLHGMRFMPGRAPPATIASMCRRFRRNMGWHPAQFRAPALGCSYR-STWDACWSAECAGIVTREWGCATR 157 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig164.4613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig164.4613.1 >prot_Ecto-sp13_S_contig164.4613.1 ID=prot_Ecto-sp13_S_contig164.4613.1|Name=mRNA_Ecto-sp13_S_contig164.4613.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=501bp MGRNKELNKLRKRNNSDRNGSSSNGRSSVTAAASDTAGGSNRGEEKRGKFback to top mRNA from alignment at Ecto-sp13_S_contig164:531..10679- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig164.4613.1 ID=mRNA_Ecto-sp13_S_contig164.4613.1|Name=mRNA_Ecto-sp13_S_contig164.4613.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=10149bp|location=Sequence derived from alignment at Ecto-sp13_S_contig164:531..10679- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig164:531..10679- >mRNA_Ecto-sp13_S_contig164.4613.1 ID=mRNA_Ecto-sp13_S_contig164.4613.1|Name=mRNA_Ecto-sp13_S_contig164.4613.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1503bp|location=Sequence derived from alignment at Ecto-sp13_S_contig164:531..10679- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |