mRNA_Ecto-sp13_S_contig16399.4612.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16399.4612.1
Unique NamemRNA_Ecto-sp13_S_contig16399.4612.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16399.4612.1 vs. uniprot
Match: D7FSU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSU6_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 4.470e-6
Identity = 25/39 (64.10%), Postives = 32/39 (82.05%), Query Frame = 3 
Query:  120 FSREAQANAPFYAGMVVVIMPEASS-RPQILKKSSKSWG 233
            F REAQA AP +AGM+V+IMPEASS +  + ++SSKSWG
Sbjct:  138 FLREAQAKAPLFAGMIVIIMPEASSGQVDMTERSSKSWG 176
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16399.4612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSU6_ECTSI4.470e-664.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16399contigEcto-sp13_S_contig16399:37..269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size233
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-19_001990.1
Cds size210
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462862.2900422-UTR-Ecto-sp13_S_contig16399:36..591681462862.2900422-UTR-Ecto-sp13_S_contig16399:36..59Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16399 37..59 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462862.2988143-CDS-Ecto-sp13_S_contig16399:59..2691681462862.2988143-CDS-Ecto-sp13_S_contig16399:59..269Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16399 60..269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16399.4612.1prot_Ecto-sp13_S_contig16399.4612.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16399 60..269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16399.4612.1

>prot_Ecto-sp13_S_contig16399.4612.1 ID=prot_Ecto-sp13_S_contig16399.4612.1|Name=mRNA_Ecto-sp13_S_contig16399.4612.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
MPTQAIKLPFQQQEVWPGHREQLCLQHDVGTGEPVPTIHDFPGKPKLTLP
SMLAWWSLSCRRPHHGRKY*
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mRNA from alignment at Ecto-sp13_S_contig16399:37..269-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16399.4612.1 ID=mRNA_Ecto-sp13_S_contig16399.4612.1|Name=mRNA_Ecto-sp13_S_contig16399.4612.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=233bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16399:37..269- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCACTCAGGCGATCAAGCTCCCGTTTCAGCAGCAGGAGGTGTGGCC
AGGGCATCGGGAACAGCTCTGCCTACAGCACGATGTTGGCACTGGCGAGC
CCGTTCCAACAATTCATGATTTTCCAGGGAAGCCCAAGCTAACGCTCCCT
TCTATGCTGGCATGGTGGTCGTTATCATGCCGGAGGCCTCATCACGGCCG
CAAATATTGAAGAAGTCGTCCAAGTCGTGGGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16399:37..269-

>mRNA_Ecto-sp13_S_contig16399.4612.1 ID=mRNA_Ecto-sp13_S_contig16399.4612.1|Name=mRNA_Ecto-sp13_S_contig16399.4612.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16399:37..269- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCACTCAGGCGATCAAGCTCCCGTTTCAGCAGCAGGAGGTGTGGCC
AGGGCATCGGGAACAGCTCTGCCTACAGCACGATGTTGGCACTGGCGAGC
CCGTTCCAACAATTCATGATTTTCCAGGGAAGCCCAAGCTAACGCTCCCT
TCTATGCTGGCATGGTGGTCGTTATCATGCCGGAGGCCTCATCACGGCCG
CAAATATTGA
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