mRNA_Ecto-sp13_S_contig16374.4602.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16374.4602.1
Unique NamemRNA_Ecto-sp13_S_contig16374.4602.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16374.4602.1 vs. uniprot
Match: D8LL49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL49_ECTSI)

HSP 1 Score: 416 bits (1070), Expect = 6.830e-145
Identity = 209/215 (97.21%), Postives = 213/215 (99.07%), Query Frame = 1
Query:   13 DQALIQRVTEEVEAESGVELDQLINPAKVINLERDLVKLRAALEDGPGSDRTAIEEEIAKKESTLVKEKRMYMQGWLKKVFVGQAVITTILGGLMASDQVPFFPHVDISVQVLGFWFVWLFTVPSLRARKPGASEKVALDIAFLATPVVSFAMPFVTKEPVPIYWANIATLVACYGYGFTVGKPDDGEGGASKSQPKWLKFIFKSLDFGSGQERG 657
            DQALIQRVT+EVEAESGVELDQLINPAKVINLERDLVKLRAALED PG+DR AIEEEIAKKESTLVKEKRMYMQGWLKKVFVGQAVITTILGGLMASDQVPFFPHVDIS+QVLGFWFVWLFTVPSLRARKPGASEKVALDIAFLATPVVSFAMPF+TKEPVPIYWANIATLVACYGYGFTVGKPDDGEGGASKSQPKWLKFIFKSLDFGSGQERG
Sbjct:  106 DQALIQRVTQEVEAESGVELDQLINPAKVINLERDLVKLRAALEDEPGTDREAIEEEIAKKESTLVKEKRMYMQGWLKKVFVGQAVITTILGGLMASDQVPFFPHVDISIQVLGFWFVWLFTVPSLRARKPGASEKVALDIAFLATPVVSFAMPFITKEPVPIYWANIATLVACYGYGFTVGKPDDGEGGASKSQPKWLKFIFKSLDFGSGQERG 320          
BLAST of mRNA_Ecto-sp13_S_contig16374.4602.1 vs. uniprot
Match: A0A6H5JI21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI21_9PHAE)

HSP 1 Score: 399 bits (1025), Expect = 3.640e-138
Identity = 201/204 (98.53%), Postives = 203/204 (99.51%), Query Frame = 1
Query:   13 DQALIQRVTEEVEAESGVELDQLINPAKVINLERDLVKLRAALEDGPGSDRTAIEEEIAKKESTLVKEKRMYMQGWLKKVFVGQAVITTILGGLMASDQVPFFPHVDISVQVLGFWFVWLFTVPSLRARKPGASEKVALDIAFLATPVVSFAMPFVTKEPVPIYWANIATLVACYGYGFTVGKPDDGEGGASKSQPKWLKFIFK 624
            DQALIQRVTEEVEAESGVELDQLINPAKVINLERDLVKLRAALEDGPG+DR AIEEEIAKKESTLVKEKRMYMQGWLKKVFVGQAVITTILGGLMASDQVPFFPHVDIS+QVLGFWFVWLFTVPSLRARKPGASEKVALDIAFLATPVVSFAMPFVTKEPVPIYWANIATLVACYGYGFTVGKPDDGEGGASKSQPKWLKFIFK
Sbjct:  110 DQALIQRVTEEVEAESGVELDQLINPAKVINLERDLVKLRAALEDGPGNDRKAIEEEIAKKESTLVKEKRMYMQGWLKKVFVGQAVITTILGGLMASDQVPFFPHVDISIQVLGFWFVWLFTVPSLRARKPGASEKVALDIAFLATPVVSFAMPFVTKEPVPIYWANIATLVACYGYGFTVGKPDDGEGGASKSQPKWLKFIFK 313          
BLAST of mRNA_Ecto-sp13_S_contig16374.4602.1 vs. uniprot
Match: A0A835YV04_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV04_9STRA)

HSP 1 Score: 251 bits (641), Expect = 1.130e-80
Identity = 127/216 (58.80%), Postives = 159/216 (73.61%), Query Frame = 1
Query:   13 DQALIQRVTEEVEAESGVELDQLINPAKVINLERDLVKLRAALEDGPGSDRTAIEEEIAKKESTLVKEKRMYMQGWLKKVFVGQAVITTILGGLMASDQVPFFPHVDISVQVLGFWFVWLFTVPSLRARKP-GASEKVALDIAFLATPVVSFAMPFVTKEPVPIYWANIATLVACYGYGFTVGKPDDGEGGASKSQPKWLKFIFKSLDFGSGQERG 657
            DQALI RV  EVE ESGV LDQLINP+KVINLERDLVKLRA LE   G   + + + I  KE+ L  EKR  MQ WLK++FVGQA ++ I+ G M  D+VP F HVD+S++VLGFW +WLF +PSLRARKP   +EK AL+IAF+A+P+VS A+P +TK+PV IYWAN+A   A Y YGF  G   + +      QP+W++FIFK+LDFGSG+ERG
Sbjct:   66 DQALIARVAAEVERESGVALDQLINPSKVINLERDLVKLRATLETATGDSASELRKTIDGKEAKLATEKRAVMQDWLKQIFVGQAALSVIIAGAMVYDRVPGFEHVDLSIRVLGFWVIWLFAIPSLRARKPTNPAEKTALNIAFVASPLVSLALPAITKDPVSIYWANLAVCAASYVYGFASGGQSEED---EAKQPQWVRFIFKALDFGSGRERG 278          
BLAST of mRNA_Ecto-sp13_S_contig16374.4602.1 vs. uniprot
Match: A0A6S9FX91_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FX91_HETAK)

HSP 1 Score: 229 bits (584), Expect = 5.320e-72
Identity = 117/216 (54.17%), Postives = 154/216 (71.30%), Query Frame = 1
Query:   13 DQALIQRVTEEVEAESGVELDQLINPAKVINLERDLVKLRAALEDGPGSDRTA-IEEEIAKKESTLVKEKRMYMQGWLKKVFVGQAVITTILGGLMASDQVPFFPHVDISVQVLGFWFVWLFTVPSLRARKPGASEKVALDIAFLATPVVSFAMPFVTKEPVPIYWANIATLVACYGYGFTVGKPDDGEGGASKSQPKWLKFIFKSLDFGSGQERG 657
            D  +I+R+ +EV   SGVEL+QL++PAKV+NLER++ +L+  LE      R A IEEEIA K++    EKRMY+QGWLK +FVGQ+V++ ++ G ++   VPF   VDISV+VLGFWF+WLFT+PSLRARKP A EK AL+ AF  TP+ +   PFVTK+PV IYWAN+    ACYGYG  + KP D    A  + P W+K   K+LD+GSG+ERG
Sbjct:   67 DALIIKRLEDEVMEISGVELEQLLSPAKVVNLEREIFQLKKELETTSNQARAAEIEEEIATKQTKANGEKRMYVQGWLKTLFVGQSVLSVVVAGFLSYGIVPFVEDVDISVRVLGFWFIWLFTIPSLRARKPAAGEKEALNWAFGLTPLTNLLAPFVTKDPVLIYWANLVVTAACYGYGLLLWKPSDAPAEADTT-PGWVKDALKALDYGSGRERG 281          
BLAST of mRNA_Ecto-sp13_S_contig16374.4602.1 vs. uniprot
Match: A0A7S2UZ01_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ01_9STRA)

HSP 1 Score: 229 bits (583), Expect = 1.130e-71
Identity = 122/220 (55.45%), Postives = 152/220 (69.09%), Query Frame = 1
Query:   13 DQALIQRVTEEVEAESGVELDQLINPAKVINLERDLVKLRAALEDGPGSDRTA-IEEEIAKKESTLVKEKRMYMQGWLKKVFVGQAVITTILGGLMASDQVPFFPHVDISVQVLGFWFVWLFTVPSLRARKPGASEKVALDIAFLATPVVSFAMPFVTKEPVPIYWANIATLVACYGYGFTVGKPDDGEGGAS----KSQPKWLKFIFKSLDFGSGQERG 657
            D AL+ R+ +EVE  +GVELDQL+NP KV+NLERDL+KL   LE    S R   I +E+ +K   L  EKRM +QGWLK +FVGQAVI+T   GLM  D VPF  H+D+SV+VLGFW +WLFTVPSLRARKP A EK AL+IAF ATP+ + A+PF TK+PV IYWAN+A L   Y YGFT+G               + P +LK   ++LD+GSG+ERG
Sbjct:   75 DAALVARLAKEVEEANGVELDQLLNPGKVVNLERDLLKLSKELEICQDSTRIEEINKEMEQKTKKLNVEKRMVVQGWLKNLFVGQAVISTFAAGLMVYDAVPFVDHLDLSVRVLGFWVIWLFTVPSLRARKPAADEKTALNIAFGATPLTNLALPFFTKDPVTIYWANMAVLGLSYAYGFTLGSXXXXXXXXXXXXXSNLPDFLKAAIRALDYGSGRERG 294          
BLAST of mRNA_Ecto-sp13_S_contig16374.4602.1 vs. uniprot
Match: W7TZ94_9STRA (Resistance to phytophthora 1 protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZ94_9STRA)

HSP 1 Score: 208 bits (529), Expect = 1.570e-63
Identity = 106/224 (47.32%), Postives = 149/224 (66.52%), Query Frame = 1
Query:   13 DQALIQRVTEEVEAESGVELDQLINPAKVINLERDLVKLR---AALEDGPGSDRTAIEEEIAKKESTLVKEKRMYMQGWLKKVFVGQAVITTILGGLMASDQVPFFPHVDISVQVLGFWFVWLFTVPSLRARKPGASEKVALDIAFLATPVVSFAMPFVTKEPVPIYWANIATLVACYGYGFTV---GKPDDGEGGASKSQ---PKWLKFIFKSLDFGSGQERG 657
            D  ++QR+ E+V  E+GV+LDQL+NP+KV+NLE +L+ LR   AA   G G     +E +I KKE+ L  EKR+ M+GWLK +F+GQ+++  +L G++A D +P F H+ + ++   FW  W+FT+PSLRAR+PGA EK ALD+AFL TPVVS  MPF+T++   I+WAN       YGY F     G+  +GE G S+     P  LK   K+LD+GSG+ERG
Sbjct:   70 DDPMVQRIREDVRRETGVDLDQLLNPSKVVNLEFELINLRNERAAATQGGGKALAKLEAQIEKKETQLATEKRLVMRGWLKNLFLGQSLLAVVLSGVVAYDALPGFEHLPLPIRAFAFWSFWMFTIPSLRARRPGAVEKKALDVAFLLTPVVSLGMPFLTQDVPTIWWANAVATGVSYGYAFAFQGKGERGEGEDGGSEEDETLPGPLKAALKALDWGSGRERG 293          
BLAST of mRNA_Ecto-sp13_S_contig16374.4602.1 vs. uniprot
Match: A0A7S2FLN3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FLN3_9STRA)

HSP 1 Score: 198 bits (503), Expect = 2.810e-59
Identity = 102/206 (49.51%), Postives = 138/206 (66.99%), Query Frame = 1
Query:   64 VELDQLINPAKVINLERDLVKLRAALE--DGPGSDRTAIEEEIAKKESTLVKEKRMYMQGWLKKVFVGQAVITTILGGLMASDQVPFFPHVDISVQVLGFWFVWLFTVPSLRARKPGA------SEKVALDIAFLATPVVSFAMPFVTKEPVPIYWANIATLVACYGYGFTVGKPDDGEGGASKSQPKWLKFIFKSLDFGSGQERG 657
            V L QL+NP+KV+NLE+D+  LRA+L   D   + R  I ++IAKKE     E R  M+ WLK VFVGQ+V++  + GL++ D +PF P++D++V+VLGFW +WLFT+PSLR+RKPG       +EK ALDIAFL TP+ +   PF TK P  I+W N+  L ACY Y FTV   +     A  S PK +KF+  +LDFG+G+ERG
Sbjct:   87 VGLTQLLNPSKVVNLEKDIDALRASLAAPDLDSAVREEIIDQIAKKEFKKSNEMRGVMRDWLKAVFVGQSVLSVAICGLVSYDALPFLPNLDLAVRVLGFWGIWLFTIPSLRSRKPGGVWGMSNAEKNALDIAFLVTPLANLLAPFATKNPPDIFWLNMVVLSACYAYSFTVSPQESSGASADASLPKPIKFVLTALDFGAGRERG 292          
BLAST of mRNA_Ecto-sp13_S_contig16374.4602.1 vs. uniprot
Match: A0A6S8YSX9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A6S8YSX9_9STRA)

HSP 1 Score: 196 bits (499), Expect = 1.290e-58
Identity = 110/246 (44.72%), Postives = 147/246 (59.76%), Query Frame = 1
Query:   13 DQALIQRVTEEVEAESGVELDQLINPAKVINLERDLVKLRAALED---------------------GPGSDRTAIEEEIAKKESTLVKEKRMYMQGWLKKVFVGQAVITTILGGLMASDQVPFFP---------HVDISVQVLGFWFVWLFTVPSLRARKPGASEKVALDIAFLATPVVSFAMPFVTKEPVPIYWANIATLVACYGYGF-TVGKPDDGEGGASKSQPKWLKFIFKSLDFGSGQERG 657
            D   ++R+ E+++ ESGV+LDQL+NPAKV+NLERDLV LR+ L D                     G G D   + ++I+KKE  L+ E+R   +GWLK +F+GQA+++  L  +M +D    F           +DIS+QVLGFW   LF VPSLR+R+P   EK ALDIAFLATP+VS   P  TK+   I+ AN A     Y + + T  K  DG+       P+WLKFI+KSLDFGSG+ERG
Sbjct:   82 DDPFVRRINEQIQEESGVDLDQLLNPAKVVNLERDLVNLRSQLADLTGITGIDNFIGITTEEIDNGGGGEDADKLRKKISKKEKDLLIERRSVFRGWLKNIFLGQAILSLGLSWIMVTDPSILFGGFDWFNNTNSIDISIQVLGFWXXXLFIVPSLRSRRPKGFEKKALDIAFLATPLVSLLAPVATKDTAEIWIANFAVTAGAYAFAYLTFDK--DGDNNDGSKDPEWLKFIYKSLDFGSGRERG 325          
BLAST of mRNA_Ecto-sp13_S_contig16374.4602.1 vs. uniprot
Match: A0A7S1GGE3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GGE3_CYCTE)

HSP 1 Score: 190 bits (482), Expect = 5.080e-57
Identity = 107/244 (43.85%), Postives = 150/244 (61.48%), Query Frame = 1
Query:   13 DQALIQRVTEEVEAESGVELDQLINPAKVINLERDLVKLRAALE------------------DGPGSDRTA--IEEEIAKKESTLVKEKRMYMQGWLKKVFVGQAVITTILGGLMASDQVPFFP--------HVDISVQVLGFWFVWLFTVPSLRARKPGASEKVALDIAFLATPVVSFAMPFVTKEPVPIYWANIATLVACYGYGF-TVGKPDDGEGGASKSQPKWLKFIFKSLDFGSGQERG 657
            D   ++ +   ++AE GV LD+L+NPAKV+NLERDL  LR  L                   DG G    A  I ++IAKKE  +  E+R   +GWLK VF+ QAV++ +L  +MAS+    F         ++D+S++VLGFW   LF VPSLR+R+P  +EK ALDIAFL TP++S   P +TK+   I+ AN+  + A Y + F T G+ DD + G++  QP+WLKFI+KSLDFG+G+ERG
Sbjct:    7 DDPFVKSIDASIQAEVGVSLDELLNPAKVVNLERDLFNLRTELATLTGKVDLDIAGLPTDECDGGGGGEAADEIRQKIAKKEKDVALERRSVFRGWLKNVFLAQAVLSFVLSWIMASNPAQLFGGFDWFYSYNMDVSIKVLGFWXXXLFVVPSLRSRRPKGAEKKALDIAFLGTPLISIVAPALTKDTELIWGANLLVVAASYAFAFLTDGEDDDDDSGSN--QPEWLKFIYKSLDFGTGRERG 248          
BLAST of mRNA_Ecto-sp13_S_contig16374.4602.1 vs. uniprot
Match: A0A448Z3P0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z3P0_9STRA)

HSP 1 Score: 189 bits (479), Expect = 1.840e-55
Identity = 105/225 (46.67%), Postives = 143/225 (63.56%), Query Frame = 1
Query:   13 DQALIQRVTEEVEAESGVELDQLINPAKVINLERDLVKLRAALEDGPGSDRT--AIEEEIAKKESTLVKEKRMYMQGWLKKVFVGQAVITTILGGLMASDQVPFFP--------HVDISVQVLGFWFVWLFTVPSLRARKPGASEKVALDIAFLATPVVSFAMPFVTKEPVPIYWANIATLVACYGYGFTVGKPDDGEGGASKSQPKWLKFIFKSLDFGSGQERG 657
            D   +Q +   +  + GV LD L+NPAKV+NLER+L +LR  LE G   + T  +I + I KKE  L  E+R   +GWLK +FVGQAVI+  +  +MA++    F          +DIS+QVLG+WF WLF VPSLR+R+P   EK ALDIAFL TP+VS A P +TK+   I++AN   +   YG+ +     DD +   S ++P WLKF++KSLDFGSG+ERG
Sbjct:  116 DDPFVQNIDAGIREDFGVGLDDLLNPAKVVNLERELYQLREELE-GTTDESTIQSITKSIEKKEGKLAIERRSVFRGWLKNIFVGQAVISFGISYVMATNPSSLFGGFDWYYYNSMDISIQVLGYWFWWLFIVPSLRSRRPRGFEKEALDIAFLGTPLVSLAAPVLTKDTGLIWFANFVIVAGAYGFAYLTDGDDDSDDSDS-NKPAWLKFVYKSLDFGSGRERG 338          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16374.4602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL49_ECTSI6.830e-14597.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JI21_9PHAE3.640e-13898.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YV04_9STRA1.130e-8058.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6S9FX91_HETAK5.320e-7254.17Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2UZ01_9STRA1.130e-7155.45Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7TZ94_9STRA1.570e-6347.32Resistance to phytophthora 1 protein n=3 Tax=Monod... [more]
A0A7S2FLN3_9STRA2.810e-5949.51Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6S8YSX9_9STRA1.290e-5844.72Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1GGE3_CYCTE5.080e-5743.85Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A448Z3P0_9STRA1.840e-5546.67Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16374contigEcto-sp13_S_contig16374:3..3327 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score420.2
Seed ortholog evalue5.8e-115
Seed eggNOG ortholog2880.D8LL49
Model size657
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs2BZA5@1,2QSK6@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-25_000030.1
Cds size657
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16374.4602.1prot_Ecto-sp13_S_contig16374.4602.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16374 3..3327 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462861.4789796-CDS-Ecto-sp13_S_contig16374:2..351681462861.4789796-CDS-Ecto-sp13_S_contig16374:2..35Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16374 3..35 -
1681462861.4936967-CDS-Ecto-sp13_S_contig16374:773..9111681462861.4936967-CDS-Ecto-sp13_S_contig16374:773..911Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16374 774..911 -
1681462861.504843-CDS-Ecto-sp13_S_contig16374:1278..14671681462861.504843-CDS-Ecto-sp13_S_contig16374:1278..1467Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16374 1279..1467 -
1681462861.5128996-CDS-Ecto-sp13_S_contig16374:2084..22011681462861.5128996-CDS-Ecto-sp13_S_contig16374:2084..2201Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16374 2085..2201 -
1681462861.5215435-CDS-Ecto-sp13_S_contig16374:2804..28881681462861.5215435-CDS-Ecto-sp13_S_contig16374:2804..2888Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16374 2805..2888 -
1681462861.531592-CDS-Ecto-sp13_S_contig16374:3231..33271681462861.531592-CDS-Ecto-sp13_S_contig16374:3231..3327Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16374 3232..3327 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16374.4602.1

>prot_Ecto-sp13_S_contig16374.4602.1 ID=prot_Ecto-sp13_S_contig16374.4602.1|Name=mRNA_Ecto-sp13_S_contig16374.4602.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=219bp
MSHGDQALIQRVTEEVEAESGVELDQLINPAKVINLERDLVKLRAALEDG
PGSDRTAIEEEIAKKESTLVKEKRMYMQGWLKKVFVGQAVITTILGGLMA
SDQVPFFPHVDISVQVLGFWFVWLFTVPSLRARKPGASEKVALDIAFLAT
PVVSFAMPFVTKEPVPIYWANIATLVACYGYGFTVGKPDDGEGGASKSQP
KWLKFIFKSLDFGSGQERG
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mRNA from alignment at Ecto-sp13_S_contig16374:3..3327-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16374.4602.1 ID=mRNA_Ecto-sp13_S_contig16374.4602.1|Name=mRNA_Ecto-sp13_S_contig16374.4602.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3325bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16374:3..3327- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCCACGGTGATCAGGCATTGATCCAACGAGTGACGGAGGAGGTGGA GGCAGAGTCCGGGGTGGAACTGGACCAGCTCATCAATCCCGCCAAGGTAA AACGTAATCAGAATCAGAACAATGACATCTTTCTTGCGGTGAGGGAGCGA TGCATTCACTCCAAGTCAGAATAACGACACAAAAGTACAGTAGCCGTGTA CAACGCCCAGCGTCCAGTGGGACAATCGTCCAAGGAAAGTGGCTTTGACA GTACTTTCTGCTTCAAGTAGTCATTATCATGACAGGGATAGGGTAGGCAT CTGCACTTCACGCGGTTTAACATGTAGAGAATGGGATGGCGAGGCTGCCA AGAGCCTCGAATGCCAACCCTAACCCTTGCCTCAGCAGCAGTGTCAAACG AGTGGCTCACACTAGCGTCCACTATGTACTGCTCCCCAGGTGATCAATCT AGAGAGGGATCTTGTCAAGCTTCGTGCTGCATTGGAAGACGGACCTGGCA GCGATCGAACGGCGATCGAGGAGGTAGGTACAGTATACAGTGGTGTAGAT TTGCGACCCTTGGTTATTGTGCGACGGTGGATCCAACCAAGTTTGTAAAT TGTAAACTGTCGGCAACGAAAACTGTAAACTGTCGGCAGAGCATTGATCC GTCATTTCTACCCCCCGCCCACACACCCCTTTCGGAGAAATGGCGTCCAC GCCGCAGTCTCGCTTGCCTCAGGGTTAGGGTTAGGGGTGGTGCCTCGTTT CTTGCTTTCTTTCGGTGGTGAGAGCAGCCGCAACGCCGTCACTGAGGCGT TTGGGTTGGTTGTGAAGTTTTTGTGCCGTATAGATTGCCGACAGTGACCG CCAGCTATCGTGCGAGATGTCCTAGAAGGCAAGGGATGTACTGTAATTGC AAAGGTATTGGCTTTGTTTTCGTGCGGGAAGGTTCGTTTCTTGCGGCTGT CGCTTATCGAGGCGCGTCGTGCAAGACAAGCGCCGTGTGCCGCTGGTTGC ATCGTTGATTCTGACTCTCAAAGCGTACAGGAGTAGTCTTGACACTGGGA AAGAAAATTTTACTGTCCGAACCTGGCTGTTGGTCGTGGTGGATGCGAAC TGAACAAACTGTCTTGTGACGTGCAGGAGATCGCGAAGAAGGAGTCCACT TTGGTGAAGGAAAAACGCATGTACATGCAGGGCTGGCTCAAGAAGGTGTT CGTTGGGCAGGCCGTGATCACGACCATCTTGGGAGGCTTGATGGTGAGCC GTCGCATTTACTTGGAGTATACCAGCGCGGGCGAGTCTTGTCATGGATGT GCCCAATCCTAATGCGATTTCGTCTTCGTCTCCTCGAAGCTGATATGGTT GGCCGCATCGTTCTCCCCCCGATGTTCTCATCTCTGAGGAACCTATACGT AGCACCTGCGCACATAAAGCGCCCCCTCGTGCTAGGCGACACGCTATTAT CCCGAAGCAGTACTCATCTTTCGCGCACAGGGGAAAATGCACACATATAG ACTAAGTTTGATTTATAACCCTAGCAAATACTATTCCCATTCACGTTGTC ATCAATAATATCACCCTTACCAATCTTACTAAGTATTTCCAACCTCGTGA ACCTCGTCACCTTTTTACCCACGATAATAACATAACAGCACTCTGACGAC TATATTGTTCGCACATCGTTCGTTTGGTCAAGAACATCTTGCACTGCTGC ACTCAACCGTTGTCAACAACCTAATACTTAGTCCAAACGCCTGTTCCACG GTTACTCTCGCGAGGCATACGCCGTCCGTAATCTGTTCATGGGGCGTGTT GCCAGCTTTGAAAAGAAGGCTTGGACTTGAGTGCTGGTTTTCGGCGTGTT TTTTCAACAGGCTAGCGACCAGGTGCCTTTCTTCCCTCACGTGGATATTT CCGTCCAAGTGCTGGGGTTCTGGTTCGTGTGGCTGTTCACGGTACCATCG CTGAGAGCAAGAAAACCAGGGGCGTCGGAGAAGGTGGCCTTGGACATTGC CTTTCTCGCCACACCGGTCGTGAGCTTCGCCATGCCCTTCGTCACTAAGG TCAGGGTCGGGCGAGATAGAAACCGCACCCTCTGGTCAACCATGAAGCAG GCAGGATCTATTCGCCACACTTCTTGTGCCATCTCCAGCCAATCAGCTTA TCCCAAACAGCTTTTGCTGAACGGTCGCCGTTCTCATTGCAGTACAGCAC TAGCGCACTTGCATTGCAGTACCGTGGTATGCTACAGCAGCGCTACACCG GTACATCTCGTCGGCACATCGTTTGAAACGCCAATTTTAGCCTTGGTTTC TCAAGCCTTTGGTGCACAGTTTCCTAAGTTGACTGTTTTCCCGTGAAAGC CTCGGGTGGATGCTCTGACGGTCCTTTTCCACAACTTTTTGCGGGTTGCG ATGCTTGCGCGTTCAGGAGCCGGTGCCCATCTATTGGGCGAACATCGCTA CGTTGGTGGCATGCTACGGGTACGGGTTCACGGTAGGGAAGCCCGATGAC GGAGAAGGAGGAGCTAGCAAGAGCCAACCCAAGTGGCTCAAGTTTATCTT CAAGGTAGGCGACAGGAAGAAACGATTTCGTGATGCACATGTAGGGTACC CTACAACCAGAGACAATTGAGAGTGTGAAGAAGCACTGCTTGGAATTGGG GATGCCCCGAAGTCGGTTTTTTCATGGCGGCGAAGACGGTAGGAACCAGA GCACCCCTAGTGGCTCGAGGGGGTTTGGTTGAAGTGGGCAAGGGTAGAGG TTGTCGAAATCGTCGGCATTGTGAAGGGGGGGAGCCGCAGCAATGCTTCG GCCATGCGGCCCATCAGCCCTCACTCGAAAAACAGCCGCTGAACGTGGCT ATCGTTTTGGAGTTGTCTCATTTTACGTCCTATCCTCTCTGTGTGCTCGG CTCGCTGTGGAGTTGTCCCATGCTTCTCTTCATGCGCTCATGCCCCGGTT TGAAATCTTTCTTCCTGAGGTTTCGATGTTTGCCCTACCGCACGTTCCTG CAACACCCCTCTTTCTGCTATGTCAACCTGTTCGCCCCACCCCTCTGCTC CTAAAGGCAGGTCATACATACAAGATAATTAGATTCACCAATTAAGAGCT CATTTTTTTTGTCGTCTCCCTCCAATTGCCACTACACTCTCGTACCCTTG AGTCGCTCCTCGCCAGACTGACAATCATCCAAGTCGAGTTGCGTAGCGCT TGCTGTTCGTTGCTCTGAAGCAAAGCGTCGGGTGATATACACCCAGTTCG CGCCTGACCTTACCCTTCCACTCTTGCGTGTGCCTTCGGCAGTCCCTCGA CTTTGGTTCTGGGCAAGAGAGAGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16374:3..3327-

>mRNA_Ecto-sp13_S_contig16374.4602.1 ID=mRNA_Ecto-sp13_S_contig16374.4602.1|Name=mRNA_Ecto-sp13_S_contig16374.4602.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=657bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16374:3..3327- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCCACGGTGATCAGGCATTGATCCAACGAGTGACGGAGGAGGTGGA
GGCAGAGTCCGGGGTGGAACTGGACCAGCTCATCAATCCCGCCAAGGTGA
TCAATCTAGAGAGGGATCTTGTCAAGCTTCGTGCTGCATTGGAAGACGGA
CCTGGCAGCGATCGAACGGCGATCGAGGAGGAGATCGCGAAGAAGGAGTC
CACTTTGGTGAAGGAAAAACGCATGTACATGCAGGGCTGGCTCAAGAAGG
TGTTCGTTGGGCAGGCCGTGATCACGACCATCTTGGGAGGCTTGATGGCT
AGCGACCAGGTGCCTTTCTTCCCTCACGTGGATATTTCCGTCCAAGTGCT
GGGGTTCTGGTTCGTGTGGCTGTTCACGGTACCATCGCTGAGAGCAAGAA
AACCAGGGGCGTCGGAGAAGGTGGCCTTGGACATTGCCTTTCTCGCCACA
CCGGTCGTGAGCTTCGCCATGCCCTTCGTCACTAAGGAGCCGGTGCCCAT
CTATTGGGCGAACATCGCTACGTTGGTGGCATGCTACGGGTACGGGTTCA
CGGTAGGGAAGCCCGATGACGGAGAAGGAGGAGCTAGCAAGAGCCAACCC
AAGTGGCTCAAGTTTATCTTCAAGTCCCTCGACTTTGGTTCTGGGCAAGA
GAGAGGC
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