mRNA_Ecto-sp13_S_contig16373.4601.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16373.4601.1
Unique NamemRNA_Ecto-sp13_S_contig16373.4601.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16373.4601.1 vs. uniprot
Match: A0A6H5KB80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB80_9PHAE)

HSP 1 Score: 434 bits (1115), Expect = 4.610e-151
Identity = 224/259 (86.49%), Postives = 231/259 (89.19%), Query Frame = 1 
Query:   19 MSTVWAFEEARAAGSLDGNVQCDADSVLEAFHRSKVTQENCEELDPLLLGSSTEDSLLLYDYVRVGCGDPTDPSTEEASFLDHCGCDDPEPYSTTEDPSVEGCSWIGAEFTDIPELSGYCFAVAISHLSSDADDSEDLY-YLNPFERDECWPKVASGTATITIFAFVMTLVTHVAEGFVVRQKVKYPDKGPSLRVEIGASVVEAVGVVAIFWVLSSFTSYRDNSYQ-DRALVLEGLALFAVACAVLGLLAEVLAGYGKL 789
            MSTVWA EEARAAGSLDGNVQCDADSV EAFHRSKVTQ+NCEELDPLL GSSTE+S  LY  + VGCGDP  PSTEEASFLDHCGCDDPEPYSTT    VEGCSWIGAEFTDIPELSGYCFAVAIS +S   +DSEDL  Y NPFER +CWPKVASGTATITIFAFVMTLVTHVAEGFVVRQKV+YPDKGPSLRVEIGASVVEAVGVVAIFWVLSSFTSYRDNS   D ALVLEGLALFAVACAVLGLLA VLAGYG L
Sbjct:    1 MSTVWASEEARAAGSLDGNVQCDADSVPEAFHRSKVTQKNCEELDPLLSGSSTENSFSLYYDISVGCGDPNVPSTEEASFLDHCGCDDPEPYSTTVSTHVEGCSWIGAEFTDIPELSGYCFAVAISRVSFGDEDSEDLLEYFNPFERYDCWPKVASGTATITIFAFVMTLVTHVAEGFVVRQKVRYPDKGPSLRVEIGASVVEAVGVVAIFWVLSSFTSYRDNSNNHDSALVLEGLALFAVACAVLGLLAVVLAGYGGL 259
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16373.4601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KB80_9PHAE4.610e-15186.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16373contigEcto-sp13_S_contig16373:652..1581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size932
Hectar predicted targeting categoryother localisation
Exons1
Cds size912
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462861.4410346-UTR-Ecto-sp13_S_contig16373:651..6691681462861.4410346-UTR-Ecto-sp13_S_contig16373:651..669Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16373 652..669 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462861.450306-CDS-Ecto-sp13_S_contig16373:669..15811681462861.450306-CDS-Ecto-sp13_S_contig16373:669..1581Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16373 670..1581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16373.4601.1prot_Ecto-sp13_S_contig16373.4601.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16373 670..1581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16373.4601.1

>prot_Ecto-sp13_S_contig16373.4601.1 ID=prot_Ecto-sp13_S_contig16373.4601.1|Name=mRNA_Ecto-sp13_S_contig16373.4601.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=304bp
MSTVWAFEEARAAGSLDGNVQCDADSVLEAFHRSKVTQENCEELDPLLLG
SSTEDSLLLYDYVRVGCGDPTDPSTEEASFLDHCGCDDPEPYSTTEDPSV
EGCSWIGAEFTDIPELSGYCFAVAISHLSSDADDSEDLYYLNPFERDECW
PKVASGTATITIFAFVMTLVTHVAEGFVVRQKVKYPDKGPSLRVEIGASV
VEAVGVVAIFWVLSSFTSYRDNSYQDRALVLEGLALFAVACAVLGLLAEV
LAGYGKLKPGEIKVFGHMLPQRDRSSKPVFQCLGEFGSATIWLGSGLLEV
VVTI
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mRNA from alignment at Ecto-sp13_S_contig16373:652..1581+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16373.4601.1 ID=mRNA_Ecto-sp13_S_contig16373.4601.1|Name=mRNA_Ecto-sp13_S_contig16373.4601.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=930bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16373:652..1581+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCTGGCATTAGAAGTCATGTCGACTGTCTGGGCGTTCGAAGAAGCGCG
GGCAGCGGGCTCCTTGGACGGCAACGTGCAATGCGACGCTGATTCCGTCC
TGGAAGCGTTTCACAGGAGCAAGGTCACCCAAGAAAACTGCGAGGAGCTG
GATCCTCTCCTGTTGGGCTCGTCGACGGAGGACTCGTTGTTACTGTACGA
CTACGTCAGAGTTGGCTGCGGGGACCCCACTGACCCCTCCACTGAAGAAG
CAAGCTTCCTGGACCATTGCGGCTGCGATGATCCCGAACCCTACTCCACG
ACTGAAGACCCTAGTGTTGAAGGCTGCAGCTGGATCGGGGCTGAGTTCAC
GGACATCCCTGAGTTGAGCGGCTATTGTTTTGCGGTTGCGATTAGTCACT
TATCTTCCGATGCCGATGATTCTGAAGACTTGTATTATCTCAACCCGTTC
GAACGAGATGAGTGCTGGCCAAAGGTCGCGTCGGGAACCGCCACGATAAC
CATCTTCGCTTTCGTGATGACCCTGGTCACTCATGTCGCAGAAGGCTTCG
TCGTTCGGCAAAAAGTTAAGTATCCCGACAAAGGACCCAGCTTGAGAGTG
GAGATTGGTGCGTCAGTTGTCGAGGCCGTTGGAGTAGTGGCGATTTTTTG
GGTACTGTCAAGCTTCACCAGCTATCGAGACAACAGCTATCAAGACCGCG
CTTTGGTCTTAGAAGGGCTTGCGTTGTTTGCCGTGGCTTGTGCAGTCTTG
GGCCTTCTTGCCGAGGTACTTGCGGGGTATGGTAAGCTCAAGCCTGGTGA
AATCAAAGTCTTCGGTCACATGCTTCCCCAACGCGACAGATCCAGCAAAC
CCGTTTTTCAGTGCTTGGGAGAGTTCGGCAGCGCAACAATATGGTTGGGT
TCCGGCTTGTTGGAAGTGGTCGTCACAATT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16373:652..1581+

>mRNA_Ecto-sp13_S_contig16373.4601.1 ID=mRNA_Ecto-sp13_S_contig16373.4601.1|Name=mRNA_Ecto-sp13_S_contig16373.4601.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=912bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16373:652..1581+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGACTGTCTGGGCGTTCGAAGAAGCGCGGGCAGCGGGCTCCTTGGA
CGGCAACGTGCAATGCGACGCTGATTCCGTCCTGGAAGCGTTTCACAGGA
GCAAGGTCACCCAAGAAAACTGCGAGGAGCTGGATCCTCTCCTGTTGGGC
TCGTCGACGGAGGACTCGTTGTTACTGTACGACTACGTCAGAGTTGGCTG
CGGGGACCCCACTGACCCCTCCACTGAAGAAGCAAGCTTCCTGGACCATT
GCGGCTGCGATGATCCCGAACCCTACTCCACGACTGAAGACCCTAGTGTT
GAAGGCTGCAGCTGGATCGGGGCTGAGTTCACGGACATCCCTGAGTTGAG
CGGCTATTGTTTTGCGGTTGCGATTAGTCACTTATCTTCCGATGCCGATG
ATTCTGAAGACTTGTATTATCTCAACCCGTTCGAACGAGATGAGTGCTGG
CCAAAGGTCGCGTCGGGAACCGCCACGATAACCATCTTCGCTTTCGTGAT
GACCCTGGTCACTCATGTCGCAGAAGGCTTCGTCGTTCGGCAAAAAGTTA
AGTATCCCGACAAAGGACCCAGCTTGAGAGTGGAGATTGGTGCGTCAGTT
GTCGAGGCCGTTGGAGTAGTGGCGATTTTTTGGGTACTGTCAAGCTTCAC
CAGCTATCGAGACAACAGCTATCAAGACCGCGCTTTGGTCTTAGAAGGGC
TTGCGTTGTTTGCCGTGGCTTGTGCAGTCTTGGGCCTTCTTGCCGAGGTA
CTTGCGGGGTATGGTAAGCTCAAGCCTGGTGAAATCAAAGTCTTCGGTCA
CATGCTTCCCCAACGCGACAGATCCAGCAAACCCGTTTTTCAGTGCTTGG
GAGAGTTCGGCAGCGCAACAATATGGTTGGGTTCCGGCTTGTTGGAAGTG
GTCGTCACAATT
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