mRNA_Ecto-sp13_S_contig16370.4600.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig16370.4600.1
Unique Name	mRNA_Ecto-sp13_S_contig16370.4600.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig16370.4600.1 vs. uniprot
Match: D8LFL1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFL1_ECTSI)

HSP 1 Score: 438 bits (1127), Expect = 1.850e-150
Identity = 216/244 (88.52%), Postives = 227/244 (93.03%), Query Frame = 1

Query:    1 DSGIQFMLQGIIPMAIFWEPYTLVKWHAMIRFGQWDEIIAEPREEDPALYPTSLTTAHYARGIAFASKGLVAEAEEEQVWFTYPILQNPALVGRTIHNNLIVSDEAPCLFKVGEAMLAGEIEYRKGNFKTAFERLREAVRLDTSLVYDEPWGWMVPSRHALGALLLEQGHIQEATEVFRADLEMYPRNMWGLLGLTQCLDKAGDPEAVEVKRRYDEASSAAESKPAATCFCAKVTGAASPTHCP 732
            +SGIQFMLQG+IPMAIFWEPYTLVKWHAMIRFG WDEIIAEPR+EDPALYPTSLTTAHYARGIAFASKGLVAEAE+EQ  +    ++NPAL GR IHNNLIVSDEAPCLFKVGEAMLAGEIEYRKGNF+TAFE LREAVRLDTSL+YDEPWGWMVPSRHALGALLLEQ HIQEATEVFRADL+MYP NMWGLLGL+QCLDKAGDPEAVE KRRYDEASS AESKPAATCFCAKV GA SPT CP
Sbjct:  283 NSGIQFMLQGLIPMAIFWEPYTLVKWHAMIRFGLWDEIIAEPRDEDPALYPTSLTTAHYARGIAFASKGLVAEAEKEQAKYLEG-MKNPALGGRMIHNNLIVSDEAPCLFKVGEAMLAGEIEYRKGNFETAFEHLREAVRLDTSLLYDEPWGWMVPSRHALGALLLEQDHIQEATEVFRADLKMYPSNMWGLLGLSQCLDKAGDPEAVEAKRRYDEASSTAESKPAATCFCAKVAGATSPTPCP 525

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BLAST of mRNA_Ecto-sp13_S_contig16370.4600.1 vs. uniprot
Match: A0A7J4Q158_9ARCH (Uncharacterized protein n=2 Tax=Candidatus Poseidoniales TaxID=133814 RepID=A0A7J4Q158_9ARCH)

HSP 1 Score: 256 bits (654), Expect = 9.480e-81
Identity = 136/248 (54.84%), Postives = 169/248 (68.15%), Query Frame = 1

Query:    1 DSGIQFMLQGIIPM-AIFWEPYTLVKWHAMIRFGQWDEIIAEPREEDPALYPTSLTTAHYARGIAFASKGLVAEAEEEQVWFTYPILQNPALVGRTIHNNLIVSD--EAPCLFKVGEAMLAGEIEYRK----------GNFKTAFERLREAVRLDTSLVYDEPWGWMVPSRHALGALLLEQGHIQEATEVFRADLEMYPRNMWGLLGLTQCLDKAGDP--EAVEVKRRYDEASSAAESKPAATCFCAK 699
            +SG+QFML GIIPM AIF E Y  + WH MIRFG+WDEIIAEP   D  ++P+++ T HYARG+A+ASKG+VAEAE EQV F    L+NPAL GR +HNNL+  D  + PC+  V  A+LAGEIEYRK           +F  AF+ LR  V L  +L Y+EPWG M P RH LGALL EQG I+EA  V+RAD++++  NMWGLLGL  CL+  GD   E  EV   ++E SS A+  PA TCFCA+
Sbjct:  135 NSGVQFMLAGIIPMGAIFLESYVTMPWHVMIRFGKWDEIIAEPMYSDRDVFPSTIATQHYARGVAYASKGMVAEAEAEQVLFD-EALKNPALAGRVLHNNLMYQDPSDGPCILLVNAAVLAGEIEYRKQFLAKARGEASDFTVAFDHLRRGVDLSLNLAYNEPWGQMQPVRHILGALLHEQGEIEEAEAVYRADIKLWKDNMWGLLGLKLCLEARGDAPEELAEVTALFNERSSRADIVPAKTCFCAQ 381

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BLAST of mRNA_Ecto-sp13_S_contig16370.4600.1 vs. uniprot
Match: A0A6V8DPB5_9ARCH (Uncharacterized protein n=2 Tax=Candidatus Poseidoniales TaxID=133814 RepID=A0A6V8DPB5_9ARCH)

HSP 1 Score: 253 bits (646), Expect = 1.920e-79
Identity = 130/249 (52.21%), Postives = 168/249 (67.47%), Query Frame = 1

Query:    1 DSGIQFMLQGIIPM-AIFWEPYTLVKWHAMIRFGQWDEIIAEPREEDPALYPTSLTTAHYARGIAFASKGLVAEAEEEQVWFTYPILQNPALVGRTIHNNLIVSD--EAPCLFKVGEAMLAGEIEYRKG----------NFKTAFERLREAVRLDTSLVYDEPWGWMVPSRHALGALLLEQGHIQEATEVFRADLEMYPRNMWGLLGLTQCLDKAGDP--EAVEVKRRYDEASSAAESKPAATCFCAKV 702
            +SG+QFML GIIPM AIF E Y  + WH MIRFG+WDEI+AEP  +D  ++P ++ T HYARG+A+ASKG+V EAE EQV F    L+NPAL GR +HNNL+  D  E PC+  V  A+L GEIEYR+           +F  AF+ +R  V L  +L Y+EPWG M P RH LGALL EQGH++EA  V+R D++++  NMWGLLGL  CL+  GD   E  +V   ++E SS A+  P+ TCFCA+V
Sbjct:  143 NSGVQFMLAGIIPMGAIFLESYVTMPWHVMIRFGKWDEILAEPMYDDKDVFPATIATQHYARGVAYASKGMVPEAEAEQVLFNQA-LENPALAGRVLHNNLMYQDPSEGPCILLVNAAVLDGEIEYRRQYLAKERGEAYDFTDAFDHIRRGVDLSLNLAYNEPWGQMQPVRHILGALLFEQGHVEEAEAVYREDIKLWKDNMWGLLGLKLCLEARGDAPEELAQVTALFEERSSRADMVPSVTCFCAQV 390

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BLAST of mRNA_Ecto-sp13_S_contig16370.4600.1 vs. uniprot
Match: A0A7M3WBP5_9ARCH (Uncharacterized protein n=3 Tax=Archaea TaxID=2157 RepID=A0A7M3WBP5_9ARCH)

HSP 1 Score: 251 bits (642), Expect = 1.150e-78
Identity = 131/248 (52.82%), Postives = 167/248 (67.34%), Query Frame = 1

Query:    1 DSGIQFMLQGIIPM-AIFWEPYTLVKWHAMIRFGQWDEIIAEPREEDPALYPTSLTTAHYARGIAFASKGLVAEAEEEQVWFTYPILQNPALVGRTIHNNLIVSD--EAPCLFKVGEAMLAGEIEYRKG----------NFKTAFERLREAVRLDTSLVYDEPWGWMVPSRHALGALLLEQGHIQEATEVFRADLEMYPRNMWGLLGLTQCLDKAGDP--EAVEVKRRYDEASSAAESKPAATCFCAK 699
            +SG+QFML GIIPM AIF E Y  + WH MIRFG+WDEI+ EP   D  ++P ++ T HYARG+A+ASKG+V EAE EQ+ F    L NPAL GR +HNNL+  D  E PC+  V +A+LAGEIEYR+           +F  AF+ LR  V L  +L Y+EPWG M P RH LGALLLEQG ++EA  V+R D++++  NMWGLLGL  CL++ GD   E  EV   ++E SS A+  PA TCFCA+
Sbjct:  158 ESGVQFMLAGIIPMGAIFLESYVTMPWHLMIRFGKWDEILNEPLHTDREVFPAAIATQHYARGVAYASKGMVPEAEAEQLLFK-EALDNPALQGRVLHNNLMYQDPSEGPCILLVNDAVLAGEIEYRRQFQAKARGEDYDFSEAFDHLRRGVNLSLNLAYNEPWGQMQPVRHILGALLLEQGEVEEAEAVYREDIKLWKDNMWGLLGLKLCLEERGDAPDELAEVTSLFNERSSRADIMPAKTCFCAQ 404

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BLAST of mRNA_Ecto-sp13_S_contig16370.4600.1 vs. uniprot
Match: A0A6V8D576_9ARCH (Uncharacterized protein n=2 Tax=Candidatus Poseidoniales TaxID=133814 RepID=A0A6V8D576_9ARCH)

HSP 1 Score: 248 bits (632), Expect = 3.720e-78
Identity = 132/248 (53.23%), Postives = 163/248 (65.73%), Query Frame = 1

Query:    1 DSGIQFMLQGIIPM-AIFWEPYTLVKWHAMIRFGQWDEIIAEPREEDPALYPTSLTTAHYARGIAFASKGLVAEAEEEQVWFTYPILQNPALVGRTIHNNLIVSD--EAPCLFKVGEAMLAGEIEYRK----------GNFKTAFERLREAVRLDTSLVYDEPWGWMVPSRHALGALLLEQGHIQEATEVFRADLEMYPRNMWGLLGLTQCLDKAGDP--EAVEVKRRYDEASSAAESKPAATCFCAK 699
            + G+ FML GIIPM AIF E Y  + WH MIRFG+WDEI+AEP   D   +P ++ T HYARG+A+ASKG+V EAE EQV F    L+NPALVGR +HNNL+  D  E P +  V  A+L  EIEYR+           +F  AF+ LR  V L  +L Y+EPWG M P RH LGALL EQGHI EA EV+RAD++++  NMWGLLGL  CL+  GD   E  EV   ++E SS A+  PA TCFCA+
Sbjct:   79 NHGVNFMLAGIIPMGAIFLESYVTMPWHVMIRFGKWDEILAEPMFSDKDAFPATIATQHYARGVAYASKGMVPEAEAEQVLFNQA-LENPALVGRLMHNNLMYQDPAEGPSILNVNAAILEAEIEYRRQYLAKAAGQPSDFTAAFDELRRGVDLSLNLAYNEPWGQMQPVRHILGALLFEQGHIAEAEEVYRADIKLWKDNMWGLLGLKLCLEARGDAAEELAEVTALFNERSSRADIIPAKTCFCAQ 325

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BLAST of mRNA_Ecto-sp13_S_contig16370.4600.1 vs. uniprot
Match: A0A2E0VAD4_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E0VAD4_9EURY)

HSP 1 Score: 253 bits (647), Expect = 1.740e-77
Identity = 132/248 (53.23%), Postives = 166/248 (66.94%), Query Frame = 1

Query:    1 DSGIQFMLQGIIPM-AIFWEPYTLVKWHAMIRFGQWDEIIAEPREEDPALYPTSLTTAHYARGIAFASKGLVAEAEEEQVWFTYPILQNPALVGRTIHNNLIVSD--EAPCLFKVGEAMLAGEIEYRK----------GNFKTAFERLREAVRLDTSLVYDEPWGWMVPSRHALGALLLEQGHIQEATEVFRADLEMYPRNMWGLLGLTQCLDKAGDP--EAVEVKRRYDEASSAAESKPAATCFCAK 699
            + G+ FML GIIPM AIF E Y  + WH MIRFG+WDEI++EP   D  ++P ++ T HYARG+A+ASKG+V EAE EQ+ F    L+NPAL GR +HNNL+  D  E PC+  V  A+L GEIEYRK           +F TAF+ LR  V L  +L Y+EPWG M P RH LGALL EQG I+EA  V+RAD++++  NMWGLLGL  CL+  GD   E  EV   ++E SS A+ KPA TCFCA+
Sbjct:  330 NHGVNFMLAGIIPMGAIFLESYVTMPWHVMIRFGKWDEILSEPMYSDKDVFPATIATQHYARGVAYASKGMVPEAEAEQILFNQA-LENPALAGRVLHNNLMYQDPSEGPCILLVNAAVLDGEIEYRKQFLAKARGESADFSTAFDHLRRGVELSLNLAYNEPWGQMQPVRHILGALLHEQGEIEEAEAVYRADIKLWKDNMWGLLGLKLCLEARGDAPDELAEVTALFNERSSRADIKPAKTCFCAQ 576

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BLAST of mRNA_Ecto-sp13_S_contig16370.4600.1 vs. uniprot
Match: A0A6V8EMF8_9ARCH (Uncharacterized protein n=3 Tax=Candidatus Poseidoniales TaxID=133814 RepID=A0A6V8EMF8_9ARCH)

HSP 1 Score: 253 bits (646), Expect = 2.440e-77
Identity = 133/248 (53.63%), Postives = 166/248 (66.94%), Query Frame = 1

Query:    1 DSGIQFMLQGIIPM-AIFWEPYTLVKWHAMIRFGQWDEIIAEPREEDPALYPTSLTTAHYARGIAFASKGLVAEAEEEQVWFTYPILQNPALVGRTIHNNLIVSD--EAPCLFKVGEAMLAGEIEYRK----------GNFKTAFERLREAVRLDTSLVYDEPWGWMVPSRHALGALLLEQGHIQEATEVFRADLEMYPRNMWGLLGLTQCLDKAGDP--EAVEVKRRYDEASSAAESKPAATCFCAK 699
            +SG+QFML GIIPM AIF E Y  + WH MIRFG+WDEI+ EP   D  ++P ++ T HYARG+A+ASKG+V EAE EQV F    LQNPAL GR +HNNL+  D  + PC+  V +A+L GEIEYR+           NF  AF+ LR  V L  +L Y+EPWG M P RH LGALL EQG I+EA  V+RAD++++  NMWGLLGL  CL+  GD   E  EV   ++E SS A+  PA TCFCA+
Sbjct:  330 ESGVQFMLAGIIPMGAIFLESYVTMPWHVMIRFGKWDEILNEPLHTDKDVFPAAIATQHYARGVAYASKGMVPEAEAEQVLFK-EALQNPALAGRVLHNNLMYQDPNDGPCILLVNDAILDGEIEYRRQYLAKESGKDSNFNEAFDHLRRGVDLSLNLAYNEPWGQMQPVRHILGALLHEQGEIEEAEAVYRADIKLWKDNMWGLLGLKLCLEARGDAPEELAEVTTLFNERSSRADIMPAKTCFCAQ 576

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BLAST of mRNA_Ecto-sp13_S_contig16370.4600.1 vs. uniprot
Match: A0A2E2I742_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E2I742_9EURY)

HSP 1 Score: 253 bits (646), Expect = 2.440e-77
Identity = 134/248 (54.03%), Postives = 165/248 (66.53%), Query Frame = 1

Query:    1 DSGIQFMLQGIIPM-AIFWEPYTLVKWHAMIRFGQWDEIIAEPREEDPALYPTSLTTAHYARGIAFASKGLVAEAEEEQVWFTYPILQNPALVGRTIHNNLIVSDEA--PCLFKVGEAMLAGEIEYRK----------GNFKTAFERLREAVRLDTSLVYDEPWGWMVPSRHALGALLLEQGHIQEATEVFRADLEMYPRNMWGLLGLTQCLDKAGDP--EAVEVKRRYDEASSAAESKPAATCFCAK 699
            +SG+QFML GIIPM AIF E Y  + WH MIRFG+WDEI+ EP   D  ++P  + T HYARG+A+ASKG+V EAE EQV F    L+NPAL GR +HNNL+  D A  PC+  V  A+LAGEIEYR+           NF  AF+ LR  V L  +L Y+EPWG M P RH LGALL EQG I+EA  V+RAD++++  NMWGLLGL  CL+  GD   E  EV   ++E SS A+  PA TCFCA+
Sbjct:  330 NSGVQFMLAGIIPMGAIFLESYVTMPWHVMIRFGKWDEILNEPMYSDKDVFPAVIATQHYARGVAYASKGMVPEAEAEQVLFE-AALENPALAGRVLHNNLMYQDPADGPCILLVNAAVLAGEIEYRRQFLAKQRGEASNFTVAFDHLRRGVDLSLNLAYNEPWGQMQPVRHILGALLFEQGEIEEAESVYRADIKLWKDNMWGLLGLKLCLEARGDAPQELAEVTALFNERSSRADIVPAKTCFCAQ 576

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BLAST of mRNA_Ecto-sp13_S_contig16370.4600.1 vs. uniprot
Match: A0A2E3ZIA0_9EURY (Uncharacterized protein n=3 Tax=Archaea TaxID=2157 RepID=A0A2E3ZIA0_9EURY)

HSP 1 Score: 252 bits (644), Expect = 4.840e-77
Identity = 135/248 (54.44%), Postives = 166/248 (66.94%), Query Frame = 1

Query:    1 DSGIQFMLQGIIPM-AIFWEPYTLVKWHAMIRFGQWDEIIAEPREEDPALYPTSLTTAHYARGIAFASKGLVAEAEEEQVWFTYPILQNPALVGRTIHNNLIVSD--EAPCLFKVGEAMLAGEIEYRKG----------NFKTAFERLREAVRLDTSLVYDEPWGWMVPSRHALGALLLEQGHIQEATEVFRADLEMYPRNMWGLLGLTQCLDKAGDP--EAVEVKRRYDEASSAAESKPAATCFCAK 699
            + G QFML GIIPM AIF E Y  + WH MIRFG+WDEI+AEP  +D  ++P ++ T HYARG+A+ASKG+VAEAE EQV F    LQNPAL GR +HNN++  D  E P +  V  A+L  EIEYR+           +F  AFE LR  V L  +L Y+EPWG M P RH LGALLLEQGHI+EA EV+RAD+ ++  NMWGLLGL  CL+  GD   E  EV   ++E SS A+  PA TCFCA+
Sbjct:  330 NHGAQFMLAGIIPMGAIFLESYVTMPWHVMIRFGKWDEILAEPMYDDKEVFPATIATQHYARGVAYASKGMVAEAEAEQVLFK-EALQNPALAGRMMHNNVMYQDPSEGPSILNVNAAILDAEIEYRRQFLAKEAGEDYDFTAAFEELRRGVDLSLNLAYNEPWGQMQPVRHILGALLLEQGHIEEAEEVYRADIVLWKDNMWGLLGLKLCLEARGDAPEELAEVTALFNERSSRADIVPAKTCFCAQ 576

[Close]

BLAST of mRNA_Ecto-sp13_S_contig16370.4600.1 vs. uniprot
Match: A0A2E5YYY7_9EURY (Uncharacterized protein n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E5YYY7_9EURY)

HSP 1 Score: 252 bits (643), Expect = 6.660e-77
Identity = 130/248 (52.42%), Postives = 168/248 (67.74%), Query Frame = 1

Query:    1 DSGIQFMLQGIIPM-AIFWEPYTLVKWHAMIRFGQWDEIIAEPREEDPALYPTSLTTAHYARGIAFASKGLVAEAEEEQVWFTYPILQNPALVGRTIHNNLIVSD--EAPCLFKVGEAMLAGEIEYRKG----------NFKTAFERLREAVRLDTSLVYDEPWGWMVPSRHALGALLLEQGHIQEATEVFRADLEMYPRNMWGLLGLTQCLDKAGDP--EAVEVKRRYDEASSAAESKPAATCFCAK 699
            +SG+QFML GIIPM AIF E Y  + WH MIRFG+WDEI+AEP   D  ++P ++ T HYARG+A+ASKG+V EAE EQ+ F    L+NPAL GR +HNNL+  D  + PC+  V +A+L GEIEYR+           +F  AF  LR  V L  +L Y+EPWG M P RH LGALLLEQG ++EA  V+RAD++++  NMWGLLGL  CL++ GD   E  +V   ++E SS A+  PA TCFCA+
Sbjct:  330 NSGVQFMLAGIIPMGAIFLESYVTMPWHVMIRFGKWDEILAEPLHTDKDVFPAAIATQHYARGVAYASKGMVKEAESEQILFK-EALKNPALAGRVLHNNLMYQDPSDGPCILLVNDAILDGEIEYRRQFLAKERGENFDFTDAFNHLRRGVDLSLNLAYNEPWGQMQPVRHILGALLLEQGELEEAESVYRADIKLWKDNMWGLLGLKLCLEQRGDSPEELAQVTSLFEERSSRADIMPAKTCFCAQ 576

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig16370.4600.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig16370.4600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LFL1_ECTSI	1.850e-150	88.52	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A7J4Q158_9ARCH	9.480e-81	54.84	Uncharacterized protein n=2 Tax=Candidatus Poseido...	[more]
A0A6V8DPB5_9ARCH	1.920e-79	52.21	Uncharacterized protein n=2 Tax=Candidatus Poseido...	[more]
A0A7M3WBP5_9ARCH	1.150e-78	52.82	Uncharacterized protein n=3 Tax=Archaea TaxID=2157...	[more]
A0A6V8D576_9ARCH	3.720e-78	53.23	Uncharacterized protein n=2 Tax=Candidatus Poseido...	[more]
A0A2E0VAD4_9EURY	1.740e-77	53.23	Uncharacterized protein n=1 Tax=Euryarchaeota arch...	[more]
A0A6V8EMF8_9ARCH	2.440e-77	53.63	Uncharacterized protein n=3 Tax=Candidatus Poseido...	[more]
A0A2E2I742_9EURY	2.440e-77	54.03	Uncharacterized protein n=1 Tax=Euryarchaeota arch...	[more]
A0A2E3ZIA0_9EURY	4.840e-77	54.44	Uncharacterized protein n=3 Tax=Archaea TaxID=2157...	[more]
A0A2E5YYY7_9EURY	6.660e-77	52.42	Uncharacterized protein n=1 Tax=Euryarchaeota arch...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig16370	contig	Ecto-sp13_S_contig16370:154..2948 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	432.6
Seed ortholog evalue	1.2e-118
Seed eggNOG ortholog	2880.D8LFL1
Model size	738
Hectar predicted targeting category	other localisation
Exons	7
EggNOG free text desc.	tpr domain protein
EggNOG OGs	28MP5@1,2QU74@2759
Cds size	720
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig16370.4600.1	prot_Ecto-sp13_S_contig16370.4600.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig16370 172..2948 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462861.313792-UTR-Ecto-sp13_S_contig16370:153..171	1681462861.313792-UTR-Ecto-sp13_S_contig16370:153..171	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig16370 154..171 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462861.3252318-CDS-Ecto-sp13_S_contig16370:171..245	1681462861.3252318-CDS-Ecto-sp13_S_contig16370:171..245	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig16370 172..245 +
1681462861.3352604-CDS-Ecto-sp13_S_contig16370:644..813	1681462861.3352604-CDS-Ecto-sp13_S_contig16370:644..813	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig16370 645..813 +
1681462861.352939-CDS-Ecto-sp13_S_contig16370:1083..1117	1681462861.352939-CDS-Ecto-sp13_S_contig16370:1083..1117	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig16370 1084..1117 +
1681462861.370007-CDS-Ecto-sp13_S_contig16370:1559..1683	1681462861.370007-CDS-Ecto-sp13_S_contig16370:1559..1683	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig16370 1560..1683 +
1681462861.3886604-CDS-Ecto-sp13_S_contig16370:2085..2202	1681462861.3886604-CDS-Ecto-sp13_S_contig16370:2085..2202	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig16370 2086..2202 +
1681462861.4019742-CDS-Ecto-sp13_S_contig16370:2583..2665	1681462861.4019742-CDS-Ecto-sp13_S_contig16370:2583..2665	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig16370 2584..2665 +
1681462861.4107087-CDS-Ecto-sp13_S_contig16370:2828..2948	1681462861.4107087-CDS-Ecto-sp13_S_contig16370:2828..2948	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig16370 2829..2948 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig16370:154..2948+
coding sequence from alignment at Ecto-sp13_S_contig16370:154..2948+

protein sequence of mRNA_Ecto-sp13_S_contig16370.4600.1

>prot_Ecto-sp13_S_contig16370.4600.1 ID=prot_Ecto-sp13_S_contig16370.4600.1|Name=mRNA_Ecto-sp13_S_contig16370.4600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=240bp
MLQGIIPMAIFWEPYTLVKWHAMIRFGQWDEIIAEPREEDPALYPTSLTT
AHYARGIAFASKGLVAEAEEEQVWFTYPILQNPALVGRTIHNNLIVSDEA
PCLFKVGEAMLAGEIEYRKGNFKTAFERLREAVRLDTSLVYDEPWGWMVP
SRHALGALLLEQGHIQEATEVFRADLEMYPRNMWGLLGLTQCLDKAGDPE
AVEVKRRYDEASSAAESKPAATCFCAKVTGAASPTHCPA*

mRNA from alignment at Ecto-sp13_S_contig16370:154..2948+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig16370.4600.1 ID=mRNA_Ecto-sp13_S_contig16370.4600.1|Name=mRNA_Ecto-sp13_S_contig16370.4600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2795bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16370:154..2948+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACAGTGGAATCCAGTTCATGCTTCAAGGTATCATCCCGATGGCAATTTT
CTGGGAGCCTTACACCCTCGTCAAGTGGCATGCCATGATCAGGTTAAGTC
GTCGACTGAACATTACTATCAAGAACCCCATACGGCTGATCTGCTAGATA
AGATTGATCGGCGCCTGACAAATCACGAACGTGTCGATCCTGCGTAGTGT
CGGGTGTCTATGTAGTGACGAAGTCTGACGGTAGACCGGTGAAGGGGGAA
CGTTTGCGCGATTGATTACGGAAAGACATGTCCAAAACGCATGGTTCCAA
CGAATCAGCCCTTGATGTCGTTGTGCACCGAATGTTCGTGACTCGCGACC
TAGAGGTATGAGCCACCGTATGAGATGCGATCGGGTCCCTACAGACTTGT
ATGCTCTCAGATTGAACAAAAACCACCAAGGAGCATCCGCCCCCGTTCTT
CTCAAGACCTTTGTTTGGTCTGTCCGTCTGGTTTGTGCAAGGTTCGGGCA
GTGGGACGAGATCATCGCCGAGCCGCGAGAGGAGGACCCAGCCCTGTACC
CTACAAGCTTGACAACTGCCCACTACGCCCGTGGCATCGCGTTTGCCTCA
AAGGGACTGGTGGCTGAGGCCGAAGAAGAGCAGGTGTGGTTTACCTATCC
GATCTTGCAAGTAGACAGTTTTTCATCGCGACGCAGAGTATCAGTTTTTT
TCCCCTCCAGGGCCGGACCATCGATGAATAGGATATGAGAGTTATCCTGC
TGAGGACGGACGAGCAGATCATGATGGTTTCTTGGACCAGTCCATAGATG
ATAAGACGTTAGAGCTATCGTGCTGAGAACGAACAAATCAAGACTTTTAA
TGTTGTAATTTCCGAGAATGTTGTCACCCCCTTCTTCGCGTCTAACCGTG
CGTCAGGCGAAGTACCTCGCAGGCATGAAGAACCCTGCGCTCGTCGGACG
CACGATTCACAACAGTGAGTGACCCCCGCCACGCGCGGCGACACGTACAC
ACCAGCGCGAAATTCGAAAAAAAGGGCAGAGAGGGCGTGGGTATGCTTTA
AAAGGGAGACCAGTGGCTGCGTGTTCTCTGTCGAAGATAGCTACCACAGC
GAGGATCAAGTTGATTTGAGTAGCGCAGGCTACGGGGGTGCGAACGGAAT
CTCTCATGTCGAAGCATTGAGCGAGAGACGGGCAACTACCGCCGGCCAGC
ATGCAGCACCACCATAGCCCGCGAAAGGGTTGCTGTTGCAGAGAGCTTAA
GCTGGAACTGACGCATGTGTGAATGTCAATGTTCCAGGAGATGTAGTCAA
ACAACCGTAAGAGCTGACTACGACTCACCCAATTCCTATTCTATACGACA
AGCTTGCTTACGAGACCCACCTTCCCGGCAACGCTAAAACACACGAATCT
ACGCAGACTTGATCGTGTCTGATGAGGCGCCTTGCCTTTTCAAGGTCGGA
GAGGCCATGCTCGCGGGGGAGATCGAGTACCGCAAGGGGAACTTCAAAAC
GGCGTTTGAGCGTCTCCGTGAGGCAGTCAGGTACGCTCCATGCTTCGCAG
CGTGACAGGACATATGGAAACAATCTTGAGGTCGTCCGTGTAGGAAATTT
TTCCGGATCAGCATACGTCCTTTCCGATAACACTGCGCTTGCGTGATCGC
TTGACACGCTCCCAGAATCCCCAGCCTCCGTCTTCTTTCCCACCGCCGCT
CTTATCTTTGTTCATGGTCGTCCGGTTCATGGTGCGAGTGAAACAACCCA
TTATCGACTCTGCCTACCTCCGGCGTTTTTTTTATGCCTACCCCTGCTCA
CCTCCACGACCCAAGCATGTCACTTCAGACGGCGATTCATTCTTCGATTC
CAAATCAAACAGCTTTTCCGCCAAGACCGAGCTGAGCAGCCTTCCCCTAA
AGCCATGCTTTTCTTGTCGCCCCGCGCTGAAGGTTGGACACTAGCTTGGT
GTACGATGAGCCATGGGGTTGGATGGTCCCCAGTCGGCACGCCCTCGGTG
CTCTCCTCCTTGAACAGGGCCACATCCAGGAGGCAACAGAAGTGTTCAGG
TGATCAAGGTCATCGTATTATAGTCGCTTTCGCTCGACACAAACATGATT
GGGTGGCTGCCACTGTTTTCGGGAAGCAGCCCATATGCACGTCTGTGCTT
CGGGCGGACACCTCAACAGAGCAATTGCTGTAGACAACACGCGAGGACAT
GTGATGCGAAGTGAGTAAATTGGTGGGGCCACACCGCCGAGTGCGTGGTT
TTGCGGGGTTACCCGAATATTATGAACCCGCTCCATCAGGAAGTGTTTTT
CTCCATCTTGGAATAGATATACTGCATGTGAGGGTTACATTTTGTAGGAT
TGTTTGCAGCTTTCTACGACCGACTCCGTGCAACTCTTACTGCCCACCCC
AAATCCCGGCCAACGATGTTGCCACGCCAGGGCGGATCTTGAGATGTACC
CTAGAAACATGTGGGGACTCCTCGGACTAACTCAGTGTCTCGACAAGGCG
GGCGATCCAGAGGTGGGTACCTCTTGTCCTGGTTTGGATCGACTTCGTAA
AGTTGAGGATGACAGCCCCTCTCCTCACTCTCGATGCCGTGTATTGAGGT
TGACTTGAGGGGTTGTTTGCGTAACGTTTATTTTCCATATTTTTTCATCA
TATTCGCGCTGTTTCGTGCAAACAGGCTGTCGAGGTCAAGAGGCGCTACG
ATGAAGCGTCGTCCGCAGCCGAATCCAAGCCAGCCGCAACCTGCTTCTGC
GCTAAAGTTACGGGAGCTGCCTCGCCCACACACTGCCCGGCTTGA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16370:154..2948+

>mRNA_Ecto-sp13_S_contig16370.4600.1 ID=mRNA_Ecto-sp13_S_contig16370.4600.1|Name=mRNA_Ecto-sp13_S_contig16370.4600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=720bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16370:154..2948+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTCAAGGTATCATCCCGATGGCAATTTTCTGGGAGCCTTACACCCT
CGTCAAGTGGCATGCCATGATCAGGTTCGGGCAGTGGGACGAGATCATCG
CCGAGCCGCGAGAGGAGGACCCAGCCCTGTACCCTACAAGCTTGACAACT
GCCCACTACGCCCGTGGCATCGCGTTTGCCTCAAAGGGACTGGTGGCTGA
GGCCGAAGAAGAGCAGGTGTGGTTTACCTATCCGATCTTGCAAAACCCTG
CGCTCGTCGGACGCACGATTCACAACAACTTGATCGTGTCTGATGAGGCG
CCTTGCCTTTTCAAGGTCGGAGAGGCCATGCTCGCGGGGGAGATCGAGTA
CCGCAAGGGGAACTTCAAAACGGCGTTTGAGCGTCTCCGTGAGGCAGTCA
GGTTGGACACTAGCTTGGTGTACGATGAGCCATGGGGTTGGATGGTCCCC
AGTCGGCACGCCCTCGGTGCTCTCCTCCTTGAACAGGGCCACATCCAGGA
GGCAACAGAAGTGTTCAGGGCGGATCTTGAGATGTACCCTAGAAACATGT
GGGGACTCCTCGGACTAACTCAGTGTCTCGACAAGGCGGGCGATCCAGAG
GCTGTCGAGGTCAAGAGGCGCTACGATGAAGCGTCGTCCGCAGCCGAATC
CAAGCCAGCCGCAACCTGCTTCTGCGCTAAAGTTACGGGAGCTGCCTCGC
CCACACACTGCCCGGCTTGA