prot_Ecto-sp13_S_contig1636.4597.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1636.4597.1
Unique Nameprot_Ecto-sp13_S_contig1636.4597.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length135
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1636.4597.1 vs. uniprot
Match: D8LSB8_ECTSI (PNPLA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSB8_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.180e-6
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 0 
Query:  101 ALIRRNRHIVTDPSIVMEQQPHQYPSSSTLAAIGN 135
            +L+  +   VTDPSIVMEQQPHQYPSSSTLAAIGN
Sbjct:  636 SLVNLSGLSVTDPSIVMEQQPHQYPSSSTLAAIGN 670
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1636.4597.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSB8_ECTSI1.180e-677.14PNPLA domain-containing protein n=2 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 49..70
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 17..37
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 71..135
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 38..48
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..16
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..18
score: 0.674
NoneNo IPR availableTMHMMTMhelixcoord: 51..73
NoneNo IPR availableTMHMMTMhelixcoord: 20..38

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1636contigEcto-sp13_S_contig1636:680..1084 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1636.4597.1mRNA_Ecto-sp13_S_contig1636.4597.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1636 680..1084 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1636.4597.1 ID=prot_Ecto-sp13_S_contig1636.4597.1|Name=mRNA_Ecto-sp13_S_contig1636.4597.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp
MCWVSVAGLLLLPSSSSSLRCGCVAVVVVVVGVIMASIRGRSCCRLHRLR
FVGVLTIAEVAATLLALFLAELLRLIPLLVARAGWRRSWHSPNTVHAHGL
ALIRRNRHIVTDPSIVMEQQPHQYPSSSTLAAIGN
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