mRNA_Ecto-sp13_S_contig1636.4597.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1636.4597.1
Unique NamemRNA_Ecto-sp13_S_contig1636.4597.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1636.4597.1 vs. uniprot
Match: D8LSB8_ECTSI (PNPLA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSB8_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.180e-6
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:  301 ALIRRNRHIVTDPSIVMEQQPHQYPSSSTLAAIGN 405
            +L+  +   VTDPSIVMEQQPHQYPSSSTLAAIGN
Sbjct:  636 SLVNLSGLSVTDPSIVMEQQPHQYPSSSTLAAIGN 670
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1636.4597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSB8_ECTSI1.180e-677.14PNPLA domain-containing protein n=2 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1636contigEcto-sp13_S_contig1636:680..1084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size407
Hectar predicted targeting categorysignal peptide
Exons1
Cds size405
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462861.0863667-CDS-Ecto-sp13_S_contig1636:679..10841681462861.0863667-CDS-Ecto-sp13_S_contig1636:679..1084Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1636 680..1084 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1636.4597.1prot_Ecto-sp13_S_contig1636.4597.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1636 680..1084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1636.4597.1

>prot_Ecto-sp13_S_contig1636.4597.1 ID=prot_Ecto-sp13_S_contig1636.4597.1|Name=mRNA_Ecto-sp13_S_contig1636.4597.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp
MCWVSVAGLLLLPSSSSSLRCGCVAVVVVVVGVIMASIRGRSCCRLHRLR
FVGVLTIAEVAATLLALFLAELLRLIPLLVARAGWRRSWHSPNTVHAHGL
ALIRRNRHIVTDPSIVMEQQPHQYPSSSTLAAIGN
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mRNA from alignment at Ecto-sp13_S_contig1636:680..1084+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1636.4597.1 ID=mRNA_Ecto-sp13_S_contig1636.4597.1|Name=mRNA_Ecto-sp13_S_contig1636.4597.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1636:680..1084+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTTGGGTATCTGTTGCTGGTTTGTTGTTGCTGCCTTCGTCGTCGTC
GTCCTTGCGTTGTGGCTGTGTCGCTGTGGTTGTTGTTGTTGTTGGTGTGA
TCATGGCGTCCATACGAGGGCGCTCTTGTTGTCGTCTGCACCGTCTTCGT
TTTGTGGGTGTTCTTACTATCGCTGAGGTCGCCGCCACTCTATTGGCGTT
GTTCCTTGCTGAGCTCCTACGCCTCATCCCGCTTCTCGTCGCCCGGGCTG
GCTGGCGGCGCTCGTGGCACTCACCGAACACGGTGCACGCGCACGGCTTG
GCCCTAATTCGTCGCAACCGGCATATAGTGACGGACCCCAGCATCGTCAT
GGAGCAGCAGCCGCACCAGTACCCGTCGTCCTCGACCCTCGCGGCGATCG
GCAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1636:680..1084+

>mRNA_Ecto-sp13_S_contig1636.4597.1 ID=mRNA_Ecto-sp13_S_contig1636.4597.1|Name=mRNA_Ecto-sp13_S_contig1636.4597.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1636:680..1084+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTTGGGTATCTGTTGCTGGTTTGTTGTTGCTGCCTTCGTCGTCGTC
GTCCTTGCGTTGTGGCTGTGTCGCTGTGGTTGTTGTTGTTGTTGGTGTGA
TCATGGCGTCCATACGAGGGCGCTCTTGTTGTCGTCTGCACCGTCTTCGT
TTTGTGGGTGTTCTTACTATCGCTGAGGTCGCCGCCACTCTATTGGCGTT
GTTCCTTGCTGAGCTCCTACGCCTCATCCCGCTTCTCGTCGCCCGGGCTG
GCTGGCGGCGCTCGTGGCACTCACCGAACACGGTGCACGCGCACGGCTTG
GCCCTAATTCGTCGCAACCGGCATATAGTGACGGACCCCAGCATCGTCAT
GGAGCAGCAGCCGCACCAGTACCCGTCGTCCTCGACCCTCGCGGCGATCG
GCAAC
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