mRNA_Ecto-sp13_S_contig16357.4596.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16357.4596.1
Unique NamemRNA_Ecto-sp13_S_contig16357.4596.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16357.4596.1 vs. uniprot
Match: D8LHY6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHY6_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 2.860e-58
Identity = 95/109 (87.16%), Postives = 101/109 (92.66%), Query Frame = 2 
Query:   17 MFNRSIDNIEWPATLREIAFGSSFNGGDSMLATSFTGGGSANLRSVVWPASLRDLTAPVAKLAEKLACDNSRRGYSRRRQQRHNFRKMRKMHHDDCTLCAGRREKRRIN 343
            MFNRSIDNIEWPATLRE+ FGSSFNGGDSMLA SFTGGGSANLRSVVWPASLRD TAPVAKL EKLAC+NSRRGY RRRQ+R +FR+MRKMHHD C LCAGRREKRRI+
Sbjct:    1 MFNRSIDNIEWPATLREMVFGSSFNGGDSMLAPSFTGGGSANLRSVVWPASLRDFTAPVAKLTEKLACNNSRRGYGRRRQRRQHFRRMRKMHHDACALCAGRREKRRID 109
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16357.4596.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHY6_ECTSI2.860e-5887.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16357contigEcto-sp13_S_contig16357:213..1142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size930
Hectar predicted targeting categoryother localisation
Exons1
Cds size513
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462861.0331368-UTR-Ecto-sp13_S_contig16357:212..2281681462861.0331368-UTR-Ecto-sp13_S_contig16357:212..228Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16357 213..228 +
1681462861.0577664-UTR-Ecto-sp13_S_contig16357:741..11421681462861.0577664-UTR-Ecto-sp13_S_contig16357:741..1142Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16357 742..1142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462861.047891-CDS-Ecto-sp13_S_contig16357:228..7411681462861.047891-CDS-Ecto-sp13_S_contig16357:228..741Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16357 229..741 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16357.4596.1prot_Ecto-sp13_S_contig16357.4596.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16357 229..741 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16357.4596.1

>prot_Ecto-sp13_S_contig16357.4596.1 ID=prot_Ecto-sp13_S_contig16357.4596.1|Name=mRNA_Ecto-sp13_S_contig16357.4596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=171bp
MFNRSIDNIEWPATLREIAFGSSFNGGDSMLATSFTGGGSANLRSVVWPA
SLRDLTAPVAKLAEKLACDNSRRGYSRRRQQRHNFRKMRKMHHDDCTLCA
GRREKRRINEFRQLDWVPKDCRIHDAYSPIKREDGLRYYDDSCTENENSS
DDEEEKQMREAVRYCVGWGY*
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mRNA from alignment at Ecto-sp13_S_contig16357:213..1142+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16357.4596.1 ID=mRNA_Ecto-sp13_S_contig16357.4596.1|Name=mRNA_Ecto-sp13_S_contig16357.4596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=930bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16357:213..1142+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTCAAGTTTGGAAGTATGTTCAACCGCAGCATCGACAACATCGAGTGGC
CTGCAACCTTGAGAGAAATCGCGTTTGGATCCAGCTTCAACGGCGGAGAT
AGCATGTTGGCAACCAGCTTCACCGGCGGAGGTAGTGCCAATCTGAGAAG
CGTGGTTTGGCCGGCGAGCTTGCGGGACTTAACCGCACCCGTCGCGAAGT
TGGCCGAGAAGCTAGCATGCGACAATTCGCGGCGCGGTTATAGTCGACGC
CGTCAACAGCGTCACAATTTCCGGAAGATGCGGAAGATGCATCACGACGA
CTGCACCCTTTGTGCAGGAAGGCGTGAGAAGAGGCGGATCAATGAGTTCC
GACAGTTAGACTGGGTCCCGAAGGATTGTCGCATCCACGATGCCTACTCC
CCCATAAAACGAGAGGACGGGCTGCGCTATTACGACGACTCGTGCACTGA
GAATGAAAATTCATCAGACGATGAGGAAGAGAAGCAGATGCGCGAAGCCG
TGAGATATTGCGTGGGGTGGGGCTACTGAGCCAGCAGGGTTATCACTTAC
CACAGTCAACATGTGTGCAGACGTGTTACGGTGGGTTGGACTACAGATGA
TCTTCAGGATATCTCGTCCAAGTAACGATCGGAGGAAGTCATGCATCTAT
CTGTCATCTACGGGAGTTAGTTGGAAGACCTTCGTTTGCAAAAATTAGGA
GCTGCATCATCGCTGGGGGTTTGAGGCCTCGCTCGCGTAGAAATGCGCGT
CTCCCAAGGGCAGCGGTTTCCGTGGTGGGAGTGCGGGCGTTCGCGTGCAC
ATAGTACGTGGGTTCTCTTCTTCTGATGAGACCTTGGACTACCAGCAGTT
CCCCAAGTTCGCGTTGTTTTTGTTCATAGTTTTTTTTTCTTCTCTGTATT
TGAGCTGGCGCCCTGCAGCAGTTACGTGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16357:213..1142+

>mRNA_Ecto-sp13_S_contig16357.4596.1 ID=mRNA_Ecto-sp13_S_contig16357.4596.1|Name=mRNA_Ecto-sp13_S_contig16357.4596.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=513bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16357:213..1142+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCAACCGCAGCATCGACAACATCGAGTGGCCTGCAACCTTGAGAGA
AATCGCGTTTGGATCCAGCTTCAACGGCGGAGATAGCATGTTGGCAACCA
GCTTCACCGGCGGAGGTAGTGCCAATCTGAGAAGCGTGGTTTGGCCGGCG
AGCTTGCGGGACTTAACCGCACCCGTCGCGAAGTTGGCCGAGAAGCTAGC
ATGCGACAATTCGCGGCGCGGTTATAGTCGACGCCGTCAACAGCGTCACA
ATTTCCGGAAGATGCGGAAGATGCATCACGACGACTGCACCCTTTGTGCA
GGAAGGCGTGAGAAGAGGCGGATCAATGAGTTCCGACAGTTAGACTGGGT
CCCGAAGGATTGTCGCATCCACGATGCCTACTCCCCCATAAAACGAGAGG
ACGGGCTGCGCTATTACGACGACTCGTGCACTGAGAATGAAAATTCATCA
GACGATGAGGAAGAGAAGCAGATGCGCGAAGCCGTGAGATATTGCGTGGG
GTGGGGCTACTGA
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