prot_Ecto-sp13_S_contig16356.4595.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16356.4595.1
Unique Nameprot_Ecto-sp13_S_contig16356.4595.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length238
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16356.4595.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 12..41
e-value: 0.0049
score: 17.0
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 66..126
e-value: 1.0E-13
score: 51.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 117..150
e-value: 2.1E-7
score: 28.7
coord: 11..43
e-value: 3.5E-4
score: 18.5
coord: 151..184
e-value: 5.4E-9
score: 33.7
coord: 186..220
e-value: 0.0012
score: 16.9
coord: 81..115
e-value: 2.5E-7
score: 28.5
coord: 46..80
e-value: 2.9E-5
score: 22.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 149..183
score: 12.551
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 219..238
score: 5.952
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 44..78
score: 11.224
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 79..113
score: 11.411
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 184..218
score: 9.646
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 114..148
score: 11.63
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 8.813
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..75
e-value: 1.6E-12
score: 49.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 91..238
e-value: 9.2E-47
score: 161.9
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 128..238
e-value: 4.4E-12
score: 45.8
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 9..71
coord: 41..235

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16356contigEcto-sp13_S_contig16356:711..3368 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16356.4595.1mRNA_Ecto-sp13_S_contig16356.4595.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16356 708..3368 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16356.4595.1 ID=prot_Ecto-sp13_S_contig16356.4595.1|Name=mRNA_Ecto-sp13_S_contig16356.4595.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=238bp
MQEDEVWVDKYAYTTAIHAAGQLGKWARCVRYLDEMDSNGVAKDVVTVSV
AISACADKGQWAQAEKLLEDMLDDGLTPNVITYTSLMVVLRRGGQHEKAI
KILDLMRSKGVMPNVRTYSVAIAACADAKEWRRALALLKEMEREGVSPNE
VSYNTAIRACGDAGQLSEALDLMDEMERRGVKASVITYGTAVAACQRAAD
WKMALELLAAMRREQIEPNEIVYGGIIKACCAAGQASK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long