mRNA_Ecto-sp13_S_contig16335.4590.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16335.4590.1
Unique NamemRNA_Ecto-sp13_S_contig16335.4590.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16335.4590.1 vs. uniprot
Match: D8LG65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG65_ECTSI)

HSP 1 Score: 319 bits (817), Expect = 7.640e-104
Identity = 167/194 (86.08%), Postives = 173/194 (89.18%), Query Frame = 1 
Query:    1 SNLISKAWSTSNENESLWRPFFSTVDPISTLGPAKLSELADQFTCRQVVTQLSLRLCSLCREPTSGFFTLTCSRVCESCFETDTRVKMCSLSFAKHHFLLSSSQVEGLPTLHVDKAHETGLPGVNTFGHNKRSITLTTCSAGKSSALARWGSEETFQAEMSARKVKAEAAHRARVAAYKAAQESMAGRTLPPPD 582
            SNLISKAW   NENESLWRPF STVDPIS LGPAKLSELA+QFTCRQVVTQLSL L SLCR+PTSGFFT+TCSRVCE CF TDTRVKMCSLSFAKHHFLLSSSQ   LPTLHVDKA+ETGLPGV  F HNKRSIT TTCSAGKSSALARWGSEE FQAEMSARK KAEAAHRARVAAY+AAQESMAGR  P P+
Sbjct:   22 SNLISKAWLAPNENESLWRPFLSTVDPISILGPAKLSELAEQFTCRQVVTQLSLPLRSLCRDPTSGFFTVTCSRVCEPCFGTDTRVKMCSLSFAKHHFLLSSSQAARLPTLHVDKAYETGLPGVERFSHNKRSITRTTCSAGKSSALARWGSEEVFQAEMSARKGKAEAAHRARVAAYEAAQESMAGRAPPLPE 215
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BLAST of mRNA_Ecto-sp13_S_contig16335.4590.1 vs. uniprot
Match: D8LG64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG64_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 2.760e-96
Identity = 169/280 (60.36%), Postives = 183/280 (65.36%), Query Frame = 1 
Query:    1 SNLISKAWSTSNENESLWRPFFSTVDPISTLGPAKLSELADQFTCRQVVTQLSLRLCSLCREPTSGFFTLTCSRVCESCFETDTRVKMCSLSFAKHHFLLSSSQVEGLPTLHVDKAHETGLPGVNTFGHNKRSITLTTCSAGKSSALARWGSEETFQAEMSARKVKAEAAHRARVAAYKAAQESMAGRTLP-PPDAAGEDDSTSTSPSAEPSLLEKPKPYPSAPRICGLGDETNFVGANQQEYHGVRGEKYGFYLIVNDAFFDAGPTLRGIISKPSRTGH 837
            SNLISKAW   N+NESLWRPF STVDPIS LGPAKLSELA+QFTCRQVVTQLSLRLCSLCREPTSGFFTLTCSRVCESCFETD R  MCSL                                                         RWGSEE FQAEM+ARKVKAEAAHRARVAAY+  Q+    ++     +  GE+DSTSTSP AEPS LEKPK YPS PRIC L  ETN+V +NQQE HGVRGEKYGFY IVNDAFFDAGPT+    +  S + H
Sbjct:   22 SNLISKAWLAPNKNESLWRPFLSTVDPISILGPAKLSELAEQFTCRQVVTQLSLRLCSLCREPTSGFFTLTCSRVCESCFETDARATMCSL---------------------------------------------------------RWGSEEGFQAEMTARKVKAEAAHRARVAAYEITQQQSTAKSPSLSREGGGEEDSTSTSPPAEPSPLEKPKRYPSTPRICRLSRETNYVASNQQEGHGVRGEKYGFYRIVNDAFFDAGPTIAISCATSSPSPH 244
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BLAST of mRNA_Ecto-sp13_S_contig16335.4590.1 vs. uniprot
Match: A0A835ZL97_9STRA (Alpha-ketoglutarate-dependent dioxygenase FTO n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL97_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 7.280e-15
Identity = 78/229 (34.06%), Postives = 106/229 (46.29%), Query Frame = 1 
Query:  169 CSLCREPTSGFFTLTCSRVCESCFETDTRVKMCSLSFA--------KHHFLLSSSQVEGLPTLHVDKAHETGLPGVNTFGHNKRSITLTTCSAGKSSALARWGSEE------------------TFQAEMSARKVKAEAAHRARVAAYKAAQESMAGRTLPPPDAAGEDDSTSTSPSAEPSLLEKPKPYPSAPRICGLGDETNFVGANQQEYHGVRGEKYGFYLIVNDA 777
            C  C   T       C+R C +CF   T  K+CS+S+         K HFLLS+SQ   L TL V +A E+G        + K S+ +T     + SA+ R+GSEE                   F AEM+ R+ KA+  H AR   Y+AAQ +         +A    D+++   S            PS+PRI GL +ETN+VGANQ   H V G KYG   + +DA
Sbjct:  785 CVACGVRTGWISYCACARTCAACFRAPT-AKLCSVSYTXXXXXXXXKAHFLLSASQEAELVTLVVPEAAESGC-----VANRKASLPITHLGRARDSAIRRFGSEEGIMHLSRAXXXXXXXXXXAFDAEMTRRRSKAQDGHDAR---YRAAQVATT-------EARARGDASAVIKS------------PSSPRILGLANETNYVGANQASGH-VYGAKYGHVFVSDDA 984
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16335.4590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LG65_ECTSI7.640e-10486.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LG64_ECTSI2.760e-9660.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZL97_9STRA7.280e-1534.06Alpha-ketoglutarate-dependent dioxygenase FTO n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16335contigEcto-sp13_S_contig16335:1..3630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score175.6
Seed ortholog evalue2.3e-41
Seed eggNOG ortholog2880.D8LG65
Model size934
Hectar predicted targeting categoryother localisation
Exons5
EggNOG OGs2D5Q8@1,2SZ98@2759
Cds size603
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16335.4590.1prot_Ecto-sp13_S_contig16335.4590.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16335 71..3006 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462860.4050186-UTR-Ecto-sp13_S_contig16335:0..701681462860.4050186-UTR-Ecto-sp13_S_contig16335:0..70Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16335 1..70 -
1681462860.4676893-UTR-Ecto-sp13_S_contig16335:3006..31261681462860.4676893-UTR-Ecto-sp13_S_contig16335:3006..3126Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16335 3007..3126 -
1681462860.4776092-UTR-Ecto-sp13_S_contig16335:3489..36301681462860.4776092-UTR-Ecto-sp13_S_contig16335:3489..3630Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16335 3490..3630 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462860.426095-CDS-Ecto-sp13_S_contig16335:70..1361681462860.426095-CDS-Ecto-sp13_S_contig16335:70..136Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16335 71..136 -
1681462860.4370127-CDS-Ecto-sp13_S_contig16335:1350..17021681462860.4370127-CDS-Ecto-sp13_S_contig16335:1350..1702Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16335 1351..1702 -
1681462860.447177-CDS-Ecto-sp13_S_contig16335:2282..24531681462860.447177-CDS-Ecto-sp13_S_contig16335:2282..2453Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16335 2283..2453 -
1681462860.4571235-CDS-Ecto-sp13_S_contig16335:2992..30061681462860.4571235-CDS-Ecto-sp13_S_contig16335:2992..3006Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16335 2993..3006 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16335.4590.1

>prot_Ecto-sp13_S_contig16335.4590.1 ID=prot_Ecto-sp13_S_contig16335.4590.1|Name=mRNA_Ecto-sp13_S_contig16335.4590.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=201bp
MCSLSFAKHHFLLSSSQVEGLPTLHVDKAHETGLPGVNTFGHNKRSITLT
TCSAGKSSALARWGSEETFQAEMSARKVKAEAAHRARVAAYKAAQESMAG
RTLPPPDAAGEDDSTSTSPSAEPSLLEKPKPYPSAPRICGLGDETNFVGA
NQQEYHGVRGEKYGFYLIVNDAFFDAGPTLRGIISKPSRTGHKLQHEQQR
*
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mRNA from alignment at Ecto-sp13_S_contig16335:1..3630-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16335.4590.1 ID=mRNA_Ecto-sp13_S_contig16335.4590.1|Name=mRNA_Ecto-sp13_S_contig16335.4590.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16335:1..3630- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAACCTGATCAGCAAGGCGTGGTCGACGTCCAACGAGAACGAGTCACT
CTGGCGCCCGTTTTTTTCCACGGTGGATCCCATCTCGACCTTAGGGCCAG
CTAAGCTTTCGGAGCTTGCTGATCAATTCACCTGTAGACAGGTATGCGTT
AGCATTGTCTATGTACATCGCTCCAGCAAGGTGTTCAATGTTGAGACGTT
TCATTCATGGCGAAGTAGAGTGAATATTGAGAATCTCACCTTCGCTGCCT
TAGATGGTAAGCAGGTGCTGAAAGCTGGACTCAATGCCGTACGCGCGCGC
TCTATCAATGTTGTTGCCGTCGACCTCCGATCCACGCTTGAAATATTTCT
GGTCTTCGCTACAGCAAATGCGAGATATGCACTCCTCCAGTGACACCGCT
ACGAAACTGTGCACCCTCCACATCAATCTCTCGTTATTCTCATCCGTGTA
ATAGGTGTAATAGGTGCTGTCATCTTTTTGTGCCGCCTGTGCCCGAGCTG
CCAGGTTGTGACCCAGCTTTCACTCCGCTTGTGCTCGCTCTGCCGGGAGC
CCACGAGCGGGTTCTTCACTTTGACGTGCTCGAGGGTGTGCGAGTCCTGC
TTCGAAACGGACACCCGCGTCAAGATGTGTAGCCTTAGGTAAACTCCCGT
CTACCGTTGTTCGTTGCGGCAATGTGTATTTGTCCTTTGCCAACACAATA
CAAAATATTGTGTGAGTGATAAGGAGAATTCAGTATGGGCCGCCGTGCTG
CACAATGGAGCCGGCCATGACTTATGGTTTATGTATGTAGTCGATTGGTC
AACTGGGATTCCCTCCAGTACCAGATGATGAAGGCCTCCTTGAACACGAT
ACTACTGTTGCTTGGTTTGAACGGGCCGAATGCATATGGCATATATGGCA
TGGTCGCCAGACCCGAACAGCTGCTGATCATCACGTTTATGTGGCTATAT
CACACTCAACCCCACAAGCAACAGGAGTACGCCTTGTTTATTTTTCATGC
CTCGGACAGGATGGGTACTCTTCACCCACTGTTAGTTTGAAATAGGCTAA
CAATTCTTGGAAACTATACACGTAATAGAAGCGCATAAGCATGCCACACG
TTGCTTGGTCCAATGCCCCACAACAACCATTGATTGCCTGCCGCCCACCC
GGTTGTTTCATACGTATCGCCTGATAGTTTCGCGAAGCACCACTTTCTTC
TCAGCAGCTCTCAGGTGGAAGGGCTTCCCACGCTTCACGTAGACAAGGCC
CATGAGACAGGCTTGCCAGGGGTGAATACGTTCGGCCACAACAAGAGAAG
CATCACACTGACAACGTGCAGCGCTGGGAAGTCGTCCGCCTTGGCTAGGT
TCGTTGCAGGCCTATTGTGCGACTATCTGGTCCTGTCATTGTGGAGCTCG
CAAATAGTGACGATTGCTGGATCGAACATGTGTAGCTGGGCGACCTTGGA
CACATCGCGCGATCAATGATGGCTGCTGTTCCGCAGATCAATGATGCTGT
GTAGCGGCAGACAATGCAATGTTAACACCAACACGTAGGTAAGCTCGTTG
GATGCTCTGTCAGCAAGCGTAAAAGAATGTTTTAACGACGCCCTTTACGA
GTCCCACTGTCTGTATGCTGCGCCCGTGATGGCGTACAGTAGAATTTCGT
GGGGTACTCCTCATGGTCCAAAGGATATCGGTAGATTTTTTTATGTTTTG
AGAGGGATTGACCTTGTCTTTGCGGTAGCTCATCCTCTTCATGCTTTGCC
TGTTCGTATGTGTGAGTGTGCTAAGCCCCCAAAAGAAACTGCGATCGATG
CAAGTTTCCGAGCGTGAAACAAGTTGTTGCAGGGCGAACGATGGTGCAAC
TCATTTCTGTAGAGCAAAGCCTATGAGCGATGCCGAACACCTCGGTGCAA
CAACCAACTCTTATCAGTCTACTCCCAGGTGGGGCTCGGAAGAAACTTTC
CAAGCGGAGATGAGCGCCAGGAAGGTCAAGGCGGAGGCTGCACATCGAGC
TCGCGTCGCCGCCTACAAAGCCGCGCAGGAGAGCATGGCCGGACGTACCC
TTCCTCCCCCAGACGCGGCCGGGGAAGACGACTCGACATCGACATCACCT
TCCGCCGAGCCATCTCTGCTCGAGAAACCAAAGCCCTACCCGTCCGCTCC
TCGCATTTGCGGCCTTGGCGACGAAACCAATTTCGTTGGAGCGAATCAGC
AAGAGTACCACGGCGTCCGAGGCGAGAAGTATGGGTTCTATCTGATTGTC
AACGACGCCTTCTTCGACGCTGGTCCGACGGTACGCTCACCGCATTGTAG
TCAGGTCATGAATTCGTTTAGCACCGTTTCACCACATATCCAGTGTTAGA
GCTATTTACATTTGGTCACCGGTTGCCACTGGGTTGCAAAAATGATCTAC
GCCGATTCCTGACGCCGAAGATTATTGTGCTTGCGGGGCACGTGGCTTGG
AACTTCAATAGCATCGCAGGGAAAGATTGTCTCCCAGGAGAAAGTCGCGA
TCGCCATCGGCCGATCCCTTCCCAGGTGACGGCACGACGAAGTATCCAAA
CGATGGGTGTTTTGAAAATAACATCTGACGATCAATCTTCCGCATCTGGA
AGGAGGGTGCTCGTGCGAGACGGGGTTACTCTTCCAAGGCGTAGGAACCG
TTTCCGTATGCACCATAGACGAGAGTACTTTCATTCCATTAGGAGGTCGA
CGATGCCATCATCGATGCACATTCACTGTCGGTAGTCGGCAGGAAGTTCG
TTCAATGCGCAGCTCATCAAGCATTGGAGTGCCCGCCCCTTACACATTGA
CTGCTTTAGAGTATTCCATACACATACCGTACGCTATGAAGAGTTCTGAT
GCAACGACACCTGCAGTATCAACTTTCGCGCTCGACATGACGGCATGATC
GCCCCGCAAGCTTACTCAAGGCAGAATCATGTTTGTCATTCATCTCTAAC
AGTGGCGCCAGGTGTAGGGTAGGGCCGAGAAGTTGGCGTTCATACACCAA
CACCAGTGTTCGTTGAATCTTCTAAGTTTTTTTTGTAAGCTCTTGATTGG
GTCCATTATTGGCTTTCCCAGGGTCATGGGAGGCCACACGGGCTTTATTT
GACCCGTGACAAAGAGCCCCTCACGGTACAACTCAACTCTGGCGTGCACG
TTGGCATGTATTTGTGGAATTCCGTGTGGGAAGTGAAACTTTGAGCGTAA
TGCTATTTTCCCCCCGGTTGTGGAAGCTTGCTAGGGTCAAGTTTGCAAGG
GACGGCAAGTCGCAGACTGGACGAAACGCAGCCCTGACCTTCTACGCCAG
TACGTCGATATGCTTGGGTATCAAGACGTGGACCTTTGTGAAAATCTACT
AGATGCTCAGAGTCAGGGGCAAGGGCTTCATTTTGTGCCTTCTCCCCCAA
CTGGCGATCTGTGCCTTCGCTCCCAACTGCCGCTCGCATGATTTCGCGGA
GACCGACGACACGCCTTCTTGCACCTGCATCAGATTGCCATCAGCTGCGC
GGCATCATCTCCAAACCCTCGCGGACCGGACACAAGCTGCAACACGAGCA
ACAACGATGACCTCGACGCGGACGTGTGCGGCGCGACATGCAATGGGTGT
TCCTCCAACTCGTACGCCCGCTTCCACACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16335:1..3630-

>mRNA_Ecto-sp13_S_contig16335.4590.1 ID=mRNA_Ecto-sp13_S_contig16335.4590.1|Name=mRNA_Ecto-sp13_S_contig16335.4590.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=603bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16335:1..3630- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTAGCCTTAGTTTCGCGAAGCACCACTTTCTTCTCAGCAGCTCTCA
GGTGGAAGGGCTTCCCACGCTTCACGTAGACAAGGCCCATGAGACAGGCT
TGCCAGGGGTGAATACGTTCGGCCACAACAAGAGAAGCATCACACTGACA
ACGTGCAGCGCTGGGAAGTCGTCCGCCTTGGCTAGGTGGGGCTCGGAAGA
AACTTTCCAAGCGGAGATGAGCGCCAGGAAGGTCAAGGCGGAGGCTGCAC
ATCGAGCTCGCGTCGCCGCCTACAAAGCCGCGCAGGAGAGCATGGCCGGA
CGTACCCTTCCTCCCCCAGACGCGGCCGGGGAAGACGACTCGACATCGAC
ATCACCTTCCGCCGAGCCATCTCTGCTCGAGAAACCAAAGCCCTACCCGT
CCGCTCCTCGCATTTGCGGCCTTGGCGACGAAACCAATTTCGTTGGAGCG
AATCAGCAAGAGTACCACGGCGTCCGAGGCGAGAAGTATGGGTTCTATCT
GATTGTCAACGACGCCTTCTTCGACGCTGGTCCGACGCTGCGCGGCATCA
TCTCCAAACCCTCGCGGACCGGACACAAGCTGCAACACGAGCAACAACGA
TGA
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