mRNA_Ecto-sp13_S_contig16325.4583.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16325.4583.1
Unique NamemRNA_Ecto-sp13_S_contig16325.4583.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16325.4583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16325contigEcto-sp13_S_contig16325:256..1064 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size809
Hectar predicted targeting categoryother localisation
Exons1
Cds size411
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462859.7727876-UTR-Ecto-sp13_S_contig16325:255..5971681462859.7727876-UTR-Ecto-sp13_S_contig16325:255..597Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16325 256..597 +
1681462859.7940037-UTR-Ecto-sp13_S_contig16325:1008..10641681462859.7940037-UTR-Ecto-sp13_S_contig16325:1008..1064Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16325 1009..1064 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462859.7840135-CDS-Ecto-sp13_S_contig16325:597..10081681462859.7840135-CDS-Ecto-sp13_S_contig16325:597..1008Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16325 598..1008 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16325.4583.1prot_Ecto-sp13_S_contig16325.4583.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16325 598..1008 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16325.4583.1

>prot_Ecto-sp13_S_contig16325.4583.1 ID=prot_Ecto-sp13_S_contig16325.4583.1|Name=mRNA_Ecto-sp13_S_contig16325.4583.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp
MPEIPHYATRTTQHARQREEVVKTSVVAQNACGILEPAIPNDMREGDVAA
RSSNPRTRQIKAGRISIRSTRRFAVRFMVRFAAECRFGLFHGFDVAVGGT
VGSIRADDLGSRVRSSDLNGSGLRFRCVLRYGSGRR*
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mRNA from alignment at Ecto-sp13_S_contig16325:256..1064+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16325.4583.1 ID=mRNA_Ecto-sp13_S_contig16325.4583.1|Name=mRNA_Ecto-sp13_S_contig16325.4583.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=809bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16325:256..1064+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGGTGCTCACTGCAGTGGGGGAGGGTGTGGCCACCGCAATGGGGGAGG
GCGTGGCCACATCGATGGTCACCTCAACCTGTTCGATGCGTTGGGAAGGA
TGGACGGCCACGCCACACAAACAGAAAGGACAGGCGAGTAAAAGACAAGG
CACAAGAGATGCCCTCATGATGGGGGCATGACATCGACAGCAGTGGGAGA
TTTCAACACACTATATCAACAGACGACTACTACTTCTACTACTATTACAA
GTACTACCACCACAACAACATGCGGACGACGAAGACGACAACAACGAAAA
CAACCGACATCACACGCAACCCCTTTCGAAGGCACGAAATAAATGCCAGA
AATTCCGCACTACGCAACACGCACGACGCAACACGCAAGACAGAGGGAAG
AGGTGGTTAAAACATCCGTCGTGGCCCAAAACGCTTGTGGCATTCTCGAA
CCCGCCATCCCTAACGACATGCGTGAGGGTGATGTAGCAGCGCGGAGCAG
CAACCCAAGAACAAGACAGATAAAGGCCGGCCGGATATCAATCAGGAGCA
CGCGTCGGTTCGCGGTTCGGTTCATGGTTCGGTTCGCGGCTGAGTGTCGG
TTCGGCTTGTTTCACGGATTCGATGTCGCTGTAGGGGGTACAGTCGGCTC
GATTCGGGCCGACGATCTCGGTTCGCGAGTGCGGTCGAGCGATTTGAACG
GTTCGGGTTTGCGATTCCGGTGCGTACTACGGTACGGGTCGGGTCGGCGA
TAGAAAGGGCTTCGAACCGGGATCCGTGAAAGCCACGGTACGGGGAGGGA
GGGGATTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16325:256..1064+

>mRNA_Ecto-sp13_S_contig16325.4583.1 ID=mRNA_Ecto-sp13_S_contig16325.4583.1|Name=mRNA_Ecto-sp13_S_contig16325.4583.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16325:256..1064+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCAGAAATTCCGCACTACGCAACACGCACGACGCAACACGCAAGACA
GAGGGAAGAGGTGGTTAAAACATCCGTCGTGGCCCAAAACGCTTGTGGCA
TTCTCGAACCCGCCATCCCTAACGACATGCGTGAGGGTGATGTAGCAGCG
CGGAGCAGCAACCCAAGAACAAGACAGATAAAGGCCGGCCGGATATCAAT
CAGGAGCACGCGTCGGTTCGCGGTTCGGTTCATGGTTCGGTTCGCGGCTG
AGTGTCGGTTCGGCTTGTTTCACGGATTCGATGTCGCTGTAGGGGGTACA
GTCGGCTCGATTCGGGCCGACGATCTCGGTTCGCGAGTGCGGTCGAGCGA
TTTGAACGGTTCGGGTTTGCGATTCCGGTGCGTACTACGGTACGGGTCGG
GTCGGCGATAG
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