mRNA_Ecto-sp13_S_contig16317.4579.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16317.4579.1
Unique NamemRNA_Ecto-sp13_S_contig16317.4579.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16317.4579.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE)

HSP 1 Score: 525 bits (1353), Expect = 5.980e-169
Identity = 318/406 (78.33%), Postives = 329/406 (81.03%), Query Frame = 1
Query:    1 QVTKARLIQHYVNVVEIDRLPPPLNLCQWVFALPFMVLDLCSRSSQRSSTGSTNSAADSAXXXXXXXXXXXXXXXXXXKAKRDRSHFDVARGCFGRLAFWAMLGPIAVLAGWVLWMISIVKAPVVVWQTSGDKSRGGRIARMLLVIFACAVGAPFWHLVMWVRGGVAGVRRAMRALGCXXXXXXXXXXXXXXXXXXXT-ASMTMRGSPATTVAEGAEDDLEKVVPIVLQEADGALATSELQIFLDDPMSDPAVRRDEETRATTVEHIKLLRNRLEATTKEQMDGLQAYLLKTAGDISRQLEESGPGGRGPRGGGRDAAAARGRVGAAPQDEDDDENRYVGGWEAGSRGAEELRQIVGARFSELDESLEGRVGALEERMXXXXXXXXXXXXXXLDLVLSARETGAPK 1215
            +VT+ARLIQHYVNVVEIDRLPPP NL QW+FALPFMVLDLC R+S+R ST STNSA    XXXXXXXXXXXX      K KRDRS+F VARG FGRLAFWAMLGPIAVLAGWVLWMISIVKAPVVVWQTSGDKS GGRIARMLLVIF CAVGAPFWHLVMWVRGGVAGVRR MRALGCXXXXXXXXXXXX       T AS+T RGSPAT VAEGAEDD+EKVVPIVLQEADGAL TSELQIFLDDPMSDP VRRDEETRATTVEHIKLLRNRLEATTKE M+GLQAYLLKTAGDISRQLEESG GGRG  G                      ENR VGGWEAG  GAEELRQIVGARFSEL+E+LEGRVGALEERM              LDLVLSARE GAPK
Sbjct: 1352 KVTRARLIQHYVNVVEIDRLPPPFNLFQWIFALPFMVLDLCFRTSRRPSTASTNSAXX--XXXXXXXXXXXXSINGNEKTKRDRSYFKVARGFFGRLAFWAMLGPIAVLAGWVLWMISIVKAPVVVWQTSGDKSLGGRIARMLLVIFVCAVGAPFWHLVMWVRGGVAGVRRTMRALGCXXXXXXXXXXXXKRGDGRTTTASITARGSPATIVAEGAEDDMEKVVPIVLQEADGALTTSELQIFLDDPMSDPDVRRDEETRATTVEHIKLLRNRLEATTKEHMNGLQAYLLKTAGDISRQLEESGAGGRGSHGXXXXXXXXXXXXXXXXXXXXXXENRDVGGWEAGGWGAEELRQIVGARFSELEETLEGRVGALEERMGAMIDERLGALANKLDLVLSAREAGAPK 1755          
BLAST of mRNA_Ecto-sp13_S_contig16317.4579.1 vs. uniprot
Match: D8LT30_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT30_ECTSI)

HSP 1 Score: 375 bits (964), Expect = 3.150e-115
Identity = 223/287 (77.70%), Postives = 226/287 (78.75%), Query Frame = 1
Query:  361 KAPVVVWQTSGDKSRGGRIARMLLVIFACAVGAPFWHLVMWVRGGVAGVRRAMRALGCXXXXXXXXXXXXXXXXXXX-TASMTMRGSPATTVAEGAEDDLEKVVPIVLQEADGALATSELQIFLDDPMSDPAVRRDEETRATTVEHIKLLRNRLEATTKEQMDGLQAYLLKTAGDISRQLEESGPGGRGPRGGGRDAAAARGRVGAAPQDEDDD--ENRYVGGWEAGSRGAEELRQIVGARFSELDESLEGRVGALEERMXXXXXXXXXXXXXXLDLVLSARETGAP 1212
            KAPVVVWQTSGDKSRGGRIARMLLVIFACAVGAPFWHLVMWVRGGVAGVRR MRALGC XXXXXXXX           TASMT+RG PATTVAEGAE D+EKVVPIVLQEADGALATSELQIFLDDPMSDPAVRRDEETRATTVEHIKLLRNRLEATTKE MDGLQAYLLKTAGDISRQLEESG GGRG  G                        ENR VGGWEAGSRGAEELRQIVGARFSELD SLE R GAL+ERM              LDLVLSARETGAP
Sbjct: 1107 KAPVVVWQTSGDKSRGGRIARMLLVIFACAVGAPFWHLVMWVRGGVAGVRRTMRALGCCXXXXXXXXGGAKRVGGRTPTASMTVRGFPATTVAEGAEHDMEKVVPIVLQEADGALATSELQIFLDDPMSDPAVRRDEETRATTVEHIKLLRNRLEATTKEHMDGLQAYLLKTAGDISRQLEESGAGGRGSHGXXXXXXXXXXXXXXXXXXXXXXXXENRDVGGWEAGSRGAEELRQIVGARFSELDASLEAREGALQERMGTMIDERLGALTKKLDLVLSARETGAP 1393          
BLAST of mRNA_Ecto-sp13_S_contig16317.4579.1 vs. uniprot
Match: A0A6H5KJG3_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJG3_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.910e-20
Identity = 90/305 (29.51%), Postives = 136/305 (44.59%), Query Frame = 1
Query:    1 QVTKARLIQHYVNVVEIDRLPPPLNLCQW-VFALPFMVLDLCSRSSQRSSTGSTNSAADSAXXXXXXXXXXXXXXXXXXKAKRDRSHFDVARGCFGRLAFWAMLGPIAVLAGWVLWMISIVKAPVVVWQT-----------SGDKSRGGRIARMLL---VIFAC--AVGAPFWHLVMWVRGGVAGVRRAMRALGCXXXXXXXXXXXXXXXXXXXTASMTMRGSPATTVAEGAEDDLEKVVPIVLQEADGALATSELQIFLDDPMSDPAVRRDEETRATTVEHIKLLRNRLEATTKEQMDGLQAYL 864
            +V+ AR++ HY  VV  D LP P NL Q  V+ + + +   C R+S  S  G+T    +                       R +  +       G + FW +LGP+AV+ G +LWM S++ A +  W+             GD  R   +  + L   VI  C    GAP + L++W+       RR +    C                   + + +  G+  +T+              +L ++ G +   +L+ FLDDPM D  VR+DE+ R TTVEHIKLLRNRLE T+KEQ+ GL+  L
Sbjct:  985 KVSIARMMDHYQLVVTNDMLPTPFNLLQLIVWPIAWCLHGCCGRNSGVS--GNTQQTRN-----------------------RSKEAYACGSKAIGPVVFWVVLGPVAVIGGSLLWMGSVLPA-MYFWRKHHRLQNKRDNGGGDSKRSMHLWSLFLRYVVIIPCWCVFGAPVYLLLLWLNAS----RRVLSRCPCNDDTR--------------STAKSRHGASKSTIES------------MLLKSPGGVGAQKLREFLDDPMDDKDVRQDEKDRRTTVEHIKLLRNRLENTSKEQLKGLEEAL 1233          
BLAST of mRNA_Ecto-sp13_S_contig16317.4579.1 vs. uniprot
Match: A0A6H5JG42_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG42_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 7.760e-20
Identity = 87/294 (29.59%), Postives = 131/294 (44.56%), Query Frame = 1
Query:   13 ARLIQHYVNVVEIDRLPPPLNLCQWV-FALPFMVLDLCSRSSQRSSTGSTNSAADSAXXXXXXXXXXXXXXXXXXKAKRDRSHFDVARGCFGRLAFWAMLGPIAVLAGWVLWMISIVKAPVVVWQT---SGDKSRGGRIA---RMLLVI-FACAVGAPFWHLVMWVRGGVAGVRRAMRALGCXXXXXXXXXXXXXXXXXXXTASMTMRGSPATTVAEGAEDDLEKVVPIVLQEADGALATSELQIFLDDPMSDPAVRRDEETRATTVEHIKLLRNRLEATTKEQMDGLQAYLLK 870
            AR++ HY  VV  D LP P NL Q V + + + V   C RS+    +GS ++  +                       R R  ++      G + FW +LGP+AV+ G +LW++S     V +W+     GD+ R   I+   R   +I   C +GAP +  V+W+         A R L C                         R +   ++A          +  +L E  G +   +L+ FLDDPM D  VR+DE  + TTVEH+KLLRNRLE T ++++ GL+  L K
Sbjct:  797 ARMMDHYQLVVTNDILPAPFNLLQLVVWPIAWCVGGCCGRST----SGSQSTRQE---------------------LNRGREAYERGNKAIGPVVFWVVLGPVAVVGGTLLWIVS-TPLSVYLWRKHHREGDRKRLSLISLGCRYFFIIPLWCILGAPVYLFVLWLG--------ASRRLLC-------------------------RCNYDVSIAHAESGHFRCTIESILLEGPGGVGAKKLREFLDDPMDDKDVRQDERDKRTTVEHVKLLRNRLENTIQDELRGLENALHK 1031          
BLAST of mRNA_Ecto-sp13_S_contig16317.4579.1 vs. uniprot
Match: A0A6H5JUV2_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV2_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.160e-18
Identity = 87/305 (28.52%), Postives = 132/305 (43.28%), Query Frame = 1
Query:    1 QVTKARLIQHYVNVVEIDRLPPPLNLCQWV-FALPFMVLDLCSRSSQRSSTGSTNSAADSAXXXXXXXXXXXXXXXXXXKAKRDRSHFDVARGCFGRLAFWAMLGPIAVLAGWVLWMISIVKAPVVVWQT-----------SGDKSRGGRIARMLL---VIFAC--AVGAPFWHLVMWVRGGVAGVRRAMRALGCXXXXXXXXXXXXXXXXXXXTASMTMRGSPATTVAEGAEDDLEKVVPIVLQEADGALATSELQIFLDDPMSDPAVRRDEETRATTVEHIKLLRNRLEATTKEQMDGLQAYL 864
            +V+ AR++ HY  VV  D LP P NL Q V + + + +   C R+S  S  G+T    +                       R +  +         + FW +LGP+AV  G +LWM S++ A +  W+             GD  +   +  + L   VI  C    GAP + L++W+        R +    C                             A++ A+      +  +  +L ++ G +   +L+ FLDDPM D  VR+DE+ R TTVEHIKLLRNRLE T+KEQ+ GL+  L
Sbjct:  259 KVSIARMMDHYQLVVTNDMLPTPFNLLQLVVWPIAWCLHGCCGRNSGVS--GNTQQTRN-----------------------RSKEAYACGSKAIEPVVFWVVLGPVAVNGGSLLWMESVLPA-MYFWRKHHRLQNKRENGGGDSKKSMHLWSLFLRYNVIIPCWCVFGAPVYLLLLWLNAS----GRVLSRCPC--------------------------NDDASSTAKSRHGASKSTIESMLLKSPGGVGAQKLREFLDDPMDDKDVRQDEKDRRTTVEHIKLLRNRLENTSKEQLKGLEEAL 507          
BLAST of mRNA_Ecto-sp13_S_contig16317.4579.1 vs. uniprot
Match: A0A6H5KIV5_9PHAE (Ion_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KIV5_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 6.270e-10
Identity = 82/287 (28.57%), Postives = 110/287 (38.33%), Query Frame = 1
Query:    1 QVTKARLIQHYVNVVEIDRLPPPLNLCQWVFALPFMVLDLCSRSSQRSSTGSTNSAADSAXXXXXXXXXXXXXXXXXXKAKRDRSHFDVARGCFGRLAFWAMLGPIAVLAGWVLWMISIVKAPVVVWQTSGDKSRGGRIARML-LVIFACAVGAPFWHLVMWVRGGVAGVRRAMRALGCXXXXXXXXXXXXXXXXXXXTASMTMRGSPATTVAEGAEDDLEKVVPIVLQEADGALATSELQIFLDDPMSDPAVRRDEETRATTVEHIKLLRNRLEATTKEQMDGLQA 858
            +VT+  +I+HY+  V+ D LPPPLNL Q   +   M+          S  G T                                 F  A    G + FW + G  AVLAG +LW IS  +   + +      S  GR++    LV   C V  P   L  W+     G     R L                       S   R      + +     LE+      Q   GAL   +L+ FL +PM DP V+RDEETR TTVEH+KLLR+ L     E++  L A
Sbjct:  691 KVTRTLVIRHYMKAVDQDMLPPPLNLIQHAVSTLAMLFG--------SLMGKTGV-------------------------------FRKAEFYSGLVLFWFVSGLFAVLAGSILWAISWPRGVFMFFLRRSSHS--GRVSGSAQLVALFCGVAMPLLMLYKWLWTSTCGA--LWRHLVDGGAWSNDGGASAGYDEIRSDGSRRPRPHDDGIIGK----TLERYGGTAGQ--GGALNVHQLREFLANPMKDPVVQRDEETRETTVEHVKLLRDNLTDMVGERVGELDA 928          
BLAST of mRNA_Ecto-sp13_S_contig16317.4579.1 vs. uniprot
Match: A0A6H5KBU4_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU4_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 9.400e-10
Identity = 82/309 (26.54%), Postives = 124/309 (40.13%), Query Frame = 1
Query:    1 QVTKARLIQHYVNVVEIDRLPPPLNLCQWVFALPFMVLDL---CSRSSQRSSTGSTNSAADSAXXXXXXXXXXXXXXXXXXKAKRDRSHFDVARGCFGRLAFWAMLGPIAVLAGWVLWMIS---IVKAPVVVWQTSGDKSRG--------------GRIARMLLVIFACAVGAPFWHLVMWVRGGVAGVRR---------------AMRALGCXXXXXXXXXXXXXXXXXXXTASMTMRGSPATTVAEGAEDDLEKVVPIVLQEADGALATSELQIFLDDPMSDPAVRRDEETRATTVEHIKLLRNRLE 822
            +V+KAR+I HY  VV+ D LP P NL Q + +L  +VL L       ++R  + +   A D                       R RS    AR  FG+  +W +LG +AV  G +LW +S     +     W ++ D+                    A+ ++V  +C  G+P W ++  VR     V +                + A  C                    A+      P              +  ++ +   GA A + L+ FL+DPM+D  VR+DE+ R TTVEHIKLLR+RLE
Sbjct:  989 KVSKARIIAHYRTVVDNDVLPAPFNLVQLILSLGVIVLTLPYYFLLEAKREHSETERPATDE-------DGRLFWGNVWEGARHRHRS----ARRAFGQFVWWLVLGSVAVAGGAMLWSLSGLFYAQYACHSWLSTTDEQNSFFGFLQEGDEEPDEEDTAKDVVVFGSC--GSPLWRMLQGVRIVFRSVLQWIGVVLAWFLIFLLCILGAPCCLVLRWLILPGTEFFSWCWKLAACRSTQDPGEDKKSPMRSSTPTIESMLKKGCCGAGAENLLE-FLEDPMNDKDVRQDEKERKTTVEHIKLLRDRLE 1283          
BLAST of mRNA_Ecto-sp13_S_contig16317.4579.1 vs. uniprot
Match: D7FZR6_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR6_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.610e-9
Identity = 77/310 (24.84%), Postives = 124/310 (40.00%), Query Frame = 1
Query:    1 QVTKARLIQHYVNVVEIDRLPPPLNLCQWVFALPF--MVLDLCSRSSQRSSTGSTNSAADSAXXXXXXXXXXXXXXXXXXKAKRDRSHFDVARGCFGRLAFWAMLGPIAVLAGWVLWMISIVKAPVVVWQT-----------------SGDKSRGGRIARMLLVIFACAVGAPFWHLVM-----------WVRGGVAGVRRAMRALGCXXXXXXXXXXXXXXXXXXXTASMTMRGSPATTVAEGAEDDLEK------VVPIVLQEADGALATSELQIFLDDPMSDPAVRRDEETRATTVEHIKLLRNRLE 822
            +V+KAR+I HY  VV+ D LP P NL Q + +L    M    C     +     T   A                     +  R R     AR  FG+L +W +LGP+AV  G +LW +S        W +                 S ++     +++ +++  +C  G+P W ++            W+  GV  +   +  L C                     S   + +   +  +  ED+          +  +L++    +   +L  FL+DPM+D  VR+DE+ + TTVEHIKLLR+RLE
Sbjct:  972 KVSKARIIAHYRTVVDNDVLPAPFNLVQLLLSLGVIAMTFPYCFLLEAKREQSETERPA--------IDEHGRLFWGNVWEGARQRHRG--ARRAFGQLVWWLVLGPVAVAGGAILWGLSGFFYAQYAWHSWLSTTDEQDCFFGFLLESDEEPDAEDMSKEVVMFGSC--GSPLWRMLQGLGIVFRFLLEWI--GVV-LAWFLTFLLCILGAPCCLFLRWLVLPGTEFFSWCWKLAACRSTQDPDEDEESPKRLSTPTIESMLKKGRSGVGAEKLLEFLEDPMNDKDVRQDEKEKKTTVEHIKLLRDRLE 1266          
BLAST of mRNA_Ecto-sp13_S_contig16317.4579.1 vs. uniprot
Match: D7FR83_ECTSI (Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR83_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.380e-7
Identity = 46/162 (28.40%), Postives = 69/162 (42.59%), Query Frame = 1
Query:    1 QVTKARLIQHYVNVVEIDRLPPPLNLCQWVFALPFMVLDLCSRSSQRSSTGSTNSAADSAXXXXXXXXXXXXXXXXXXKAKRDRSHFDVARGCFGRLAFWAMLGPIAVLAGWVLWMISIVKAPVVVWQTSGDKSRGGRIARMLLVIFACAVGAPFWHLVMWV 486
            +V++AR+  HY  VV  D LP P NL Q V  LP  ++D+  +       G+T                                 + +AR   GR+ FW +LGP A+L G  +W++S  KA   +W      S   R+ R +L +    +G P   +V WV
Sbjct:  795 RVSRARVYTHYRWVVATDALPAPFNLAQLVVLLPCKMVDVLFK-------GNT---------------------------------YPIARRGVGRIVFWLLLGPGAILGGVFVWLVSTPKALFAIWGKR-SLSIASRLGRTMLCLLWITLGVPLCLVVSWV 915          
BLAST of mRNA_Ecto-sp13_S_contig16317.4579.1 vs. uniprot
Match: A0A6H5JMG8_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMG8_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 5.760e-7
Identity = 70/291 (24.05%), Postives = 105/291 (36.08%), Query Frame = 1
Query:    1 QVTKARLIQHYVNVVEIDRLPPPLNLCQWVFALPFMVLDLCSRSSQRSSTGSTNSAADSAXXXXXXXXXXXXXXXXXXKAKRDRSHFDVARGCFGRLAFWAMLGPIAVLAGWVLWMISIVKAPVVVWQTSGDKSRGGRIARMLLVIFACAVGAPFWHLVMWVRGGVAGVRRAMRALGCXXXXXXXXXXXXXXXXXXXTASMTMRGSPATTVAEGAEDDLEKVVPIVLQEADGALATSELQIFLDDPMSDPAVRRDEETRATTVEHIKLLRNRLEATTKEQMDGLQAYLLKT 873
            +V++AR+  HY  VV  D LP P NL Q V  LP  ++DL  +S+                                         + +AR   GR+ FW +LGP A+L G  +W++S  KA   + +     S   R+ R +L +    +G P   +V WV        +A R L                          + G    T+    ++ +      V   A   LAT++LQ   D                 T EHI+    RLE    E+++G  A L  T
Sbjct:  886 RVSRARVYTHYRWVVATDALPAPFNLAQLVVLLPCQMVDLLFKSNT----------------------------------------YPIARRGVGRIVFWLVLGPGAILGGIFVWLVSTPKALFAICRKR-SLSILSRVGRTMLCLLWITLGVPLCLVVSWVT-------QATRVLFGRTFGLEGARPSGPIIHTVDDMLKEVTGVGMATLRMHLKNPVASEKCCVSARAADRLATADLQALRD------------HVEDMTKEHIEAAHRRLEKQLDEKLEGFLAKLSAT 1116          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16317.4579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5LDE6_9PHAE5.980e-16978.33Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LT30_ECTSI3.150e-11577.70Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5KJG3_9PHAE1.910e-2029.51Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JG42_9PHAE7.760e-2029.59Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JUV2_9PHAE1.160e-1828.52Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KIV5_9PHAE6.270e-1028.57Ion_trans domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KBU4_9PHAE9.400e-1026.54Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FZR6_ECTSI1.610e-924.84Ankyrin Repeat Transient Receptor Potential Channe... [more]
D7FR83_ECTSI1.380e-728.40Transient Receptor Potential Channel n=1 Tax=Ectoc... [more]
A0A6H5JMG8_9PHAE5.760e-724.05Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16317contigEcto-sp13_S_contig16317:1046..2573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score381.7
Seed ortholog evalue4.2e-103
Seed eggNOG ortholog2880.D8LT30
Model size1218
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.calcium ion transmembrane transport
EggNOG OGsKOG3676@1,KOG3676@2759
Cds size1218
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462859.3464377-CDS-Ecto-sp13_S_contig16317:1045..17421681462859.3464377-CDS-Ecto-sp13_S_contig16317:1045..1742Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16317 1046..1742 +
1681462859.3557675-CDS-Ecto-sp13_S_contig16317:2052..25731681462859.3557675-CDS-Ecto-sp13_S_contig16317:2052..2573Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16317 2053..2573 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16317.4579.1prot_Ecto-sp13_S_contig16317.4579.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16317 1046..2573 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16317.4579.1

>prot_Ecto-sp13_S_contig16317.4579.1 ID=prot_Ecto-sp13_S_contig16317.4579.1|Name=mRNA_Ecto-sp13_S_contig16317.4579.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=406bp
QVTKARLIQHYVNVVEIDRLPPPLNLCQWVFALPFMVLDLCSRSSQRSST
GSTNSAADSASSSRSRSSSSSSKENEKTKAKRDRSHFDVARGCFGRLAFW
AMLGPIAVLAGWVLWMISIVKAPVVVWQTSGDKSRGGRIARMLLVIFACA
VGAPFWHLVMWVRGGVAGVRRAMRALGCCCCGGGRGGGTKRVGGRTTTAS
MTMRGSPATTVAEGAEDDLEKVVPIVLQEADGALATSELQIFLDDPMSDP
AVRRDEETRATTVEHIKLLRNRLEATTKEQMDGLQAYLLKTAGDISRQLE
ESGPGGRGPRGGGRDAAAARGRVGAAPQDEDDDENRYVGGWEAGSRGAEE
LRQIVGARFSELDESLEGRVGALEERMGAMIDERLGALTEKLDLVLSARE
TGAPK*
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mRNA from alignment at Ecto-sp13_S_contig16317:1046..2573+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16317.4579.1 ID=mRNA_Ecto-sp13_S_contig16317.4579.1|Name=mRNA_Ecto-sp13_S_contig16317.4579.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1528bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16317:1046..2573+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGACCAAGGCTAGGCTGATCCAGCACTACGTAAACGTGGTCGAGAT CGACCGCCTCCCGCCGCCCCTTAACCTGTGTCAGTGGGTCTTCGCCCTCC CCTTCATGGTGCTAGACTTGTGTTCCCGCTCCTCCCAGCGCTCCTCAACG GGATCCACCAACTCAGCCGCCGACTCTGCTTCCAGCAGCAGAAGCAGAAG CAGCAGCAGCAGCAGCAAAGAGAACGAAAAAACAAAGGCAAAGAGAGACC GCAGCCATTTCGATGTTGCCCGCGGCTGCTTCGGCCGGCTGGCGTTCTGG GCCATGCTCGGCCCCATCGCCGTCCTCGCCGGCTGGGTGCTGTGGATGAT CTCCATCGTAAAGGCACCGGTCGTGGTCTGGCAAACCTCGGGGGACAAGA GCCGCGGCGGAAGGATCGCCAGGATGCTGCTCGTGATCTTCGCTTGTGCG GTGGGAGCACCCTTCTGGCACCTGGTCATGTGGGTGCGAGGCGGCGTGGC GGGCGTGAGGAGGGCCATGCGTGCTCTGGGCTGCTGCTGCTGCGGGGGGG GACGCGGGGGCGGGACGAAGCGGGTCGGCGGAAGGACGACAACCGCGTCG ATGACGATGCGTGGCTCTCCCGCGACGACCGTGGCCGAAGGAGCAGAAGA TGATTTGGAGAAGGTGGTGCCGATCGTGCTGCAGGAGGCAGATGGGGGTG AGTGATGCCAGCAATCCCGGGTCGCGATTATTGACGATCAAATCACCACA GCCCCCCGCCCCTGCCCAGGTACAGTAGGCGTCCTATTGAACAAACGAGT TTAAACGAAGAGCAGCGCGGAGACAAAAAATGCCCAACAACTACCACGCA CCGCCCGCGTTAGACCCGTATTTTCCTGTACTCTTCTGCATGGAAAAAGG TAGTTGTCCATCGAACCCTATCGGCCCCACCACAACAACTCCCCGCTTTT GCCTTCCTGGAATCGCTCATGCGTGATCGTACGCCTCATGTACGACGCTT TCCCCAGCTCTGGCCACCAGCGAGCTCCAGATCTTTCTCGACGACCCCAT GAGCGATCCGGCCGTGCGCCGAGACGAGGAGACGAGGGCAACTACGGTGG AGCATATCAAGCTGCTCAGAAACCGCCTGGAGGCCACGACCAAGGAGCAG ATGGACGGGCTGCAGGCCTACCTCCTCAAGACCGCGGGAGATATATCCCG CCAGCTGGAGGAGTCGGGTCCGGGGGGTCGTGGACCTCGTGGCGGTGGTC GCGATGCTGCCGCCGCCCGGGGTCGGGTAGGTGCCGCACCCCAAGACGAA GATGACGACGAAAATCGCTACGTGGGCGGATGGGAGGCCGGGAGCCGGGG CGCGGAGGAGCTGAGGCAGATCGTCGGCGCAAGGTTTAGCGAGCTCGACG AAAGCCTCGAAGGAAGGGTGGGAGCGCTAGAAGAGAGGATGGGGGCCATG ATTGACGAACGATTGGGTGCCCTGACGGAGAAGCTGGACCTTGTCCTCAG CGCGCGGGAAACGGGGGCACCGAAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16317:1046..2573+

>mRNA_Ecto-sp13_S_contig16317.4579.1 ID=mRNA_Ecto-sp13_S_contig16317.4579.1|Name=mRNA_Ecto-sp13_S_contig16317.4579.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1218bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16317:1046..2573+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGACCAAGGCTAGGCTGATCCAGCACTACGTAAACGTGGTCGAGAT
CGACCGCCTCCCGCCGCCCCTTAACCTGTGTCAGTGGGTCTTCGCCCTCC
CCTTCATGGTGCTAGACTTGTGTTCCCGCTCCTCCCAGCGCTCCTCAACG
GGATCCACCAACTCAGCCGCCGACTCTGCTTCCAGCAGCAGAAGCAGAAG
CAGCAGCAGCAGCAGCAAAGAGAACGAAAAAACAAAGGCAAAGAGAGACC
GCAGCCATTTCGATGTTGCCCGCGGCTGCTTCGGCCGGCTGGCGTTCTGG
GCCATGCTCGGCCCCATCGCCGTCCTCGCCGGCTGGGTGCTGTGGATGAT
CTCCATCGTAAAGGCACCGGTCGTGGTCTGGCAAACCTCGGGGGACAAGA
GCCGCGGCGGAAGGATCGCCAGGATGCTGCTCGTGATCTTCGCTTGTGCG
GTGGGAGCACCCTTCTGGCACCTGGTCATGTGGGTGCGAGGCGGCGTGGC
GGGCGTGAGGAGGGCCATGCGTGCTCTGGGCTGCTGCTGCTGCGGGGGGG
GACGCGGGGGCGGGACGAAGCGGGTCGGCGGAAGGACGACAACCGCGTCG
ATGACGATGCGTGGCTCTCCCGCGACGACCGTGGCCGAAGGAGCAGAAGA
TGATTTGGAGAAGGTGGTGCCGATCGTGCTGCAGGAGGCAGATGGGGCTC
TGGCCACCAGCGAGCTCCAGATCTTTCTCGACGACCCCATGAGCGATCCG
GCCGTGCGCCGAGACGAGGAGACGAGGGCAACTACGGTGGAGCATATCAA
GCTGCTCAGAAACCGCCTGGAGGCCACGACCAAGGAGCAGATGGACGGGC
TGCAGGCCTACCTCCTCAAGACCGCGGGAGATATATCCCGCCAGCTGGAG
GAGTCGGGTCCGGGGGGTCGTGGACCTCGTGGCGGTGGTCGCGATGCTGC
CGCCGCCCGGGGTCGGGTAGGTGCCGCACCCCAAGACGAAGATGACGACG
AAAATCGCTACGTGGGCGGATGGGAGGCCGGGAGCCGGGGCGCGGAGGAG
CTGAGGCAGATCGTCGGCGCAAGGTTTAGCGAGCTCGACGAAAGCCTCGA
AGGAAGGGTGGGAGCGCTAGAAGAGAGGATGGGGGCCATGATTGACGAAC
GATTGGGTGCCCTGACGGAGAAGCTGGACCTTGTCCTCAGCGCGCGGGAA
ACGGGGGCACCGAAGTAG
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