mRNA_Ecto-sp13_S_contig1631.4573.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1631.4573.1
Unique NamemRNA_Ecto-sp13_S_contig1631.4573.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1631.4573.1 vs. uniprot
Match: D8LGF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF9_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 7.100e-27
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 1
Query:    1 GMDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGSDAVNTIYYLTLANVASGS 168
            GMDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGS+AVNTIYY+TLANV SGS
Sbjct:  117 GMDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGSEAVNTIYYVTLANVPSGS 172          
BLAST of mRNA_Ecto-sp13_S_contig1631.4573.1 vs. uniprot
Match: A0A6H5JF22_9PHAE (ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF22_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.970e-25
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 1
Query:    4 MDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGSDAVNTIYYLTLANVASGS 168
            MDAYCLLRF YLCLRICLFSSFWGMLVLTPVY LDGSDAVNTIYYLTLANV SGS
Sbjct:  120 MDAYCLLRFNYLCLRICLFSSFWGMLVLTPVYALDGSDAVNTIYYLTLANVPSGS 174          
BLAST of mRNA_Ecto-sp13_S_contig1631.4573.1 vs. uniprot
Match: A0A835ZAA7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAA7_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.890e-9
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    1 GMDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGSDAVNTIYYLTLANVASG 165
            G DAY LL F ++CL IC+ SSFWGML+L P+Y  DG+ A    Y LT+ NV +G
Sbjct:   80 GPDAYLLLSFEWMCLMICVVSSFWGMLLLAPLYASDGNQAEG-FYQLTMINVPNG 133          
BLAST of mRNA_Ecto-sp13_S_contig1631.4573.1 vs. uniprot
Match: A0A7S4D9P4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9P4_HETAK)

HSP 1 Score: 55.5 bits (132), Expect = 1.620e-7
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    1 GMDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGSDAVNTIYY-LTLANVASGS 168
            GMDAY  +R++ LC RIC FSSFWG+LVL P+Y    +D  N  +   +L NV  GS
Sbjct:   68 GMDAYVFIRYLTLCFRICAFSSFWGLLVLLPIYA--SADIRNDNFSRFSLVNVTQGS 122          
BLAST of mRNA_Ecto-sp13_S_contig1631.4573.1 vs. uniprot
Match: K0SUY1_THAOC (Uncharacterized protein (Fragment) n=2 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SUY1_THAOC)

HSP 1 Score: 54.7 bits (130), Expect = 3.110e-7
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    1 GMDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGSDAVNTIYYLTLANVASGS 168
            G+DAY  LR+I +CL++ L SSFW M++L PVY   G    +  YY ++ANV  G+
Sbjct:  227 GLDAYFYLRYIRMCLKLTLVSSFWAMVILCPVYA-SGGGGQSGCYYFSMANVLPGN 281          
BLAST of mRNA_Ecto-sp13_S_contig1631.4573.1 vs. uniprot
Match: A0A7S2W663_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W663_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 4.620e-5
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 1
Query:    1 GMDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGSDAVNTIYYLTLANV 156
            G+DAY LLRFI LC+R+ +F+SF+G +VL PVY   G    +    LTL NV
Sbjct:  124 GLDAYMLLRFIRLCIRLTMFTSFFGGVVLIPVYY-SGRGQASGFNKLTLNNV 174          
BLAST of mRNA_Ecto-sp13_S_contig1631.4573.1 vs. uniprot
Match: A0A7S0XE76_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XE76_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 4.690e-5
Identity = 25/56 (44.64%), Postives = 36/56 (64.29%), Query Frame = 1
Query:    1 GMDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGSDAVNTIYYLTLANVASGS 168
            G+DAY LLR+  LCL++CLF +FWG++VL P Y    S  ++   Y T+ NV   +
Sbjct:  114 GLDAYMLLRYHVLCLKLCLFITFWGLVVLLPTYGTVHSKLLHWDKY-TIMNVVESN 168          
BLAST of mRNA_Ecto-sp13_S_contig1631.4573.1 vs. uniprot
Match: W7UA14_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UA14_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 8.800e-5
Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 1
Query:    1 GMDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYV 102
            G+DAY LLR+I +CL+ICL S F+G++VL P+YV
Sbjct:  102 GLDAYMLLRYIQMCLKICLCSGFFGLVVLLPMYV 135          
BLAST of mRNA_Ecto-sp13_S_contig1631.4573.1 vs. uniprot
Match: A0A4D9D0H9_9STRA (ULP_PROTEASE domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0H9_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 8.810e-5
Identity = 21/34 (61.76%), Postives = 29/34 (85.29%), Query Frame = 1
Query:    1 GMDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYV 102
            G+DAY LLR+I +CL+ICL S F+G++VL P+YV
Sbjct:  949 GLDAYMLLRYIQMCLKICLCSGFFGLVVLLPMYV 982          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1631.4573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LGF9_ECTSI7.100e-2794.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JF22_9PHAE1.970e-2594.55ERD protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835ZAA7_9STRA3.890e-954.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4D9P4_HETAK1.620e-750.88Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
K0SUY1_THAOC3.110e-746.43Uncharacterized protein (Fragment) n=2 Tax=Thalass... [more]
A0A7S2W663_9STRA4.620e-551.92Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S0XE76_9STRA4.690e-544.64Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
W7UA14_9STRA8.800e-561.76Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A4D9D0H9_9STRA8.810e-561.76ULP_PROTEASE domain-containing protein n=1 Tax=Nan... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1631contigEcto-sp13_S_contig1631:16093..16260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score106.3
Seed ortholog evalue4.6e-21
Seed eggNOG ortholog2880.D8LGF9
Model size168
Hectar predicted targeting categorysignal anchor
Exons1
EggNOG free text desc.ion transport
EggNOG OGsCOG5594@1,KOG1134@2759
Cds size165
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462859.1148975-UTR-Ecto-sp13_S_contig1631:16092..160951681462859.1148975-UTR-Ecto-sp13_S_contig1631:16092..16095Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1631 16093..16095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462859.12717-CDS-Ecto-sp13_S_contig1631:16095..162601681462859.12717-CDS-Ecto-sp13_S_contig1631:16095..16260Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1631 16096..16260 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1631.4573.1prot_Ecto-sp13_S_contig1631.4573.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1631 16096..16260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1631.4573.1

>prot_Ecto-sp13_S_contig1631.4573.1 ID=prot_Ecto-sp13_S_contig1631.4573.1|Name=mRNA_Ecto-sp13_S_contig1631.4573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
MDAYCLLRFIYLCLRICLFSSFWGMLVLTPVYVLDGSDAVNTIYYLTLAN
VASGS
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mRNA from alignment at Ecto-sp13_S_contig1631:16093..16260+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1631.4573.1 ID=mRNA_Ecto-sp13_S_contig1631.4573.1|Name=mRNA_Ecto-sp13_S_contig1631.4573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1631:16093..16260+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTATGGACGCCTACTGCCTGCTGCGGTTCATCTACCTTTGCCTCCGGAT CTGTCTCTTCTCGTCCTTCTGGGGCATGCTCGTGCTGACGCCCGTGTACG TCCTCGATGGTTCAGACGCGGTGAACACGATCTATTACCTCACGCTGGCT AACGTCGCATCGGGCAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1631:16093..16260+

>mRNA_Ecto-sp13_S_contig1631.4573.1 ID=mRNA_Ecto-sp13_S_contig1631.4573.1|Name=mRNA_Ecto-sp13_S_contig1631.4573.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1631:16093..16260+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGCCTACTGCCTGCTGCGGTTCATCTACCTTTGCCTCCGGATCTG
TCTCTTCTCGTCCTTCTGGGGCATGCTCGTGCTGACGCCCGTGTACGTCC
TCGATGGTTCAGACGCGGTGAACACGATCTATTACCTCACGCTGGCTAAC
GTCGCATCGGGCAGC
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