mRNA_Ecto-sp13_S_contig1631.4571.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1631.4571.1
Unique NamemRNA_Ecto-sp13_S_contig1631.4571.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1631.4571.1 vs. uniprot
Match: A0A6H5J9H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H9_9PHAE)

HSP 1 Score: 490 bits (1261), Expect = 6.940e-156
Identity = 283/312 (90.71%), Postives = 286/312 (91.67%), Query Frame = 1 
Query:   22 AGEGGWLVLRKHLLQWLLAVSARCGDVQASSEYFAGLAELTAALEDERGKADRYLVTLPLPPSEGVSPGGRMLPPVPLVMEALGNVATASSTAGAAPSIASARESRVSWSDRMMRRATAEHGPPPPSMQAQQTFLPSTPSTTTASITSTSGPATGNSSRDAFLGSNHVRSPTMPASPVQHRFETLASDFLQPASSXXXXXXXXXXXXTATAAGAKKSRKISLPKSIGRKIQASRSSGVVGRREASFSATAPPLLPVEGGGG---------SVCAVAHRAALTLEEQWETLSDMALCTSRLSPEDVARVQLSG 930
            AGEGGWLVLRK+LLQWLLAVSARCGDVQASSEYFAGLAELTAALEDERGKADRYLVTLPLPPSEGVSPGGRMLPPVPLVMEALGNVATASSTAGAAPSIASARESRVSWSDRMMRRATAEHGPPPPSMQAQQTFLP TPSTT+AS TSTSGPATGNSSRDAFLGS HVRSPTMPASP+QHRFETLASDFL PASS XXXXXXXXXXX     GAKKSRKISLPKSIGRKIQASRSSGVVGRREASFSA APPLLPVE             SVCAVAHRAALTLEEQWETLSDMALCTSRLSPEDVARVQ  G
Sbjct:  512 AGEGGWLVLRKYLLQWLLAVSARCGDVQASSEYFAGLAELTAALEDERGKADRYLVTLPLPPSEGVSPGGRMLPPVPLVMEALGNVATASSTAGAAPSIASARESRVSWSDRMMRRATAEHGPPPPSMQAQQTFLPPTPSTTSASFTSTSGPATGNSSRDAFLGSGHVRSPTMPASPIQHRFETLASDFLHPASSSXXXXXXXXXXXXX---GAKKSRKISLPKSIGRKIQASRSSGVVGRREASFSAMAPPLLPVEAAXXXXXXXXXXXSVCAVAHRAALTLEEQWETLSDMALCTSRLSPEDVARVQGGG 820
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BLAST of mRNA_Ecto-sp13_S_contig1631.4571.1 vs. uniprot
Match: D8LGF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF7_ECTSI)

HSP 1 Score: 267 bits (683), Expect = 5.350e-78
Identity = 184/210 (87.62%), Postives = 188/210 (89.52%), Query Frame = 1 
Query:  538 MPASPVQHRFETLASDFLQPASSXXXXXXXXXXXXTATAA--GAKKSRKISLPKSIGRKIQASRSSGVVGRREASFSATAPPLLPVEGGGG----SVCAVAHRAALTLEEQWETLSDMALCTSRLSPEDVARVQLSGIPRLESARLLHLHGGLALLPGDGAASQAXXXXXXXXXXXXXXXAL-FYNPFEEAVAGMDDE-ESDNGDGDIDS 1143
            MPASP+QHRFETLASDFLQPASSXXXXXXXXXXXX       GAKKSRKISLPKSIGRKIQASRSSGV+GRREASFSAT PPLLP+E  G     SVCAVAHRAALTLEEQWETLSDMALCTSRLSPED ARVQLSGIPRLESARLLHLHGGLALLPGDGAASQAXXXXXXXXXXXXXXX   FYNPFEEAV GMDD  ES+NGDGDIDS
Sbjct:    1 MPASPIQHRFETLASDFLQPASSXXXXXXXXXXXXXXXXXXXGAKKSRKISLPKSIGRKIQASRSSGVLGRREASFSATGPPLLPIEAAGXXXXXSVCAVAHRAALTLEEQWETLSDMALCTSRLSPEDAARVQLSGIPRLESARLLHLHGGLALLPGDGAASQAXXXXXXXXXXXXXXXXXXFYNPFEEAVGGMDDXXESENGDGDIDS 210
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BLAST of mRNA_Ecto-sp13_S_contig1631.4571.1 vs. uniprot
Match: D8LGF8_ECTSI (OSJNBa0029H02.30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF8_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 1.360e-8
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 3 
Query:  180 ISRDAAASALRRRVSRGAHAPPRPVGDGSTGERCDCLFNGRSGSVD 317
            +S DAA+SALRRRVSRGA+APPR +GDGSTGERC  L +GRSGSVD
Sbjct:  391 VSGDAASSALRRRVSRGANAPPRTLGDGSTGERCG-LLDGRSGSVD 435
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1631.4571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J9H9_9PHAE6.940e-15690.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGF7_ECTSI5.350e-7887.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LGF8_ECTSI1.360e-878.26OSJNBa0029H02.30 n=1 Tax=Ectocarpus siliculosus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1631contigEcto-sp13_S_contig1631:2589..7033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1144
Hectar predicted targeting categoryother localisation
Exons6
Cds size1143
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1631.4571.1prot_Ecto-sp13_S_contig1631.4571.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1631 2589..7033 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462858.7894168-CDS-Ecto-sp13_S_contig1631:2588..28101681462858.7894168-CDS-Ecto-sp13_S_contig1631:2588..2810Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1631 2589..2810 -
1681462858.7990165-CDS-Ecto-sp13_S_contig1631:3618..38461681462858.7990165-CDS-Ecto-sp13_S_contig1631:3618..3846Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1631 3619..3846 -
1681462858.8132339-CDS-Ecto-sp13_S_contig1631:4620..47841681462858.8132339-CDS-Ecto-sp13_S_contig1631:4620..4784Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1631 4621..4784 -
1681462858.828331-CDS-Ecto-sp13_S_contig1631:5365..55751681462858.828331-CDS-Ecto-sp13_S_contig1631:5365..5575Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1631 5366..5575 -
1681462858.8467193-CDS-Ecto-sp13_S_contig1631:6234..63751681462858.8467193-CDS-Ecto-sp13_S_contig1631:6234..6375Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1631 6235..6375 -
1681462858.8636413-CDS-Ecto-sp13_S_contig1631:6855..70331681462858.8636413-CDS-Ecto-sp13_S_contig1631:6855..7033Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1631 6856..7033 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1631.4571.1

>prot_Ecto-sp13_S_contig1631.4571.1 ID=prot_Ecto-sp13_S_contig1631.4571.1|Name=mRNA_Ecto-sp13_S_contig1631.4571.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=381bp
TPLAGRGAGEGGWLVLRKHLLQWLLAVSARCGDVQASSEYFAGLAELTAA
LEDERGKADRYLVTLPLPPSEGVSPGGRMLPPVPLVMEALGNVATASSTA
GAAPSIASARESRVSWSDRMMRRATAEHGPPPPSMQAQQTFLPSTPSTTT
ASITSTSGPATGNSSRDAFLGSNHVRSPTMPASPVQHRFETLASDFLQPA
SSSSSSSAAMVAAGTATAAGAKKSRKISLPKSIGRKIQASRSSGVVGRRE
ASFSATAPPLLPVEGGGGSVCAVAHRAALTLEEQWETLSDMALCTSRLSP
EDVARVQLSGIPRLESARLLHLHGGLALLPGDGAASQAASASQAAAAAAA
ASSALFYNPFEEAVAGMDDEESDNGDGDIDS
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mRNA from alignment at Ecto-sp13_S_contig1631:2589..7033-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1631.4571.1 ID=mRNA_Ecto-sp13_S_contig1631.4571.1|Name=mRNA_Ecto-sp13_S_contig1631.4571.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4445bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1631:2589..7033- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCCTCTGGCGGGCAGGGGGGCGGGGGAGGGCGGCTGGCTGGTGCTGCG
GAAGCACTTGCTGCAGTGGCTGCTGGCGGTGAGCGCCCGGTGCGGAGACG
TGCAGGCTTCGAGCGAGTACTTCGCCGGGCTGGCGGAGCTGACGGCGGCC
CTCGAGGACGAGCGGGGCAAGGCCGACCGTGAGTTGTCGTACGGTAGATG
GTGGCGACTGACGTGCCCCCCCTCCCCCCACCCGCGTGTTGTGTTGTCTT
GCTTGTCTCCGCGCACATCTAGGCGTAAACGATCCAAGTGATGGGACCTC
CCCCGCAGGTCCGCCTTCTCGATGACGCGTGGTCAATGGTCTAATCGCTA
AGGCATGCAAAACAAGAGAGGACGCCCCCCTCCCCGCAGCCCAGTTTTTG
AGAAGGGAGGGTGGGTTGGGGTATGAGAATGCAGGGACTGGAGCAACGCC
GAATGTTGCGATTCGGGGGCGTTGTTGGTGGGGTGGTGCTTCATGAACGT
CGGAATGCGGAGGGGCTCCTCAGGCATTCATGGCACGGGCCCCCCTCAGG
TATTCCTCCTTCTTTCATGAGTGACCATTGTTCCCCGGTACACCTTGAAC
CAACGCTTCATCTCTCGTCCGTATGCTGTCCGTGTCTTGGGGGGGAAATG
TTTTGCAGGATATCTCGTGACGCTGCCGCTTCCGCCCTCCGAAGGCGTGT
CTCCCGGGGGGCGCATGCTCCCCCCCGTCCCGTTGGTGATGGAAGCACTG
GGGAACGTTGCGACTGCCTCTTCAACGGCAGGAGCGGCTCCGTCGATAGG
TCGGTCTCGAGATGTTTCGCTGTGGTGTAGAATTCATGAAATGGTGGCAA
ATAGTAATGATTAAGTTGGCGGCAGGGGCAAGGGTTGGCAGTAGTGATTA
GGGTTGGAAGGATGTGCCGAAGGTGTTTTTGTTCAAAGGCGTAAGGAGCA
GAGCGTTGCCACCCATCACGACACGGCGGTCTGCGTGTGTTGTGTCTTGG
TCGGCCTCGCTGCTTGCGTCATAGCTTACCCCGACTCTCGCTCCTGCCTC
CCTCCTCCTGCTGCTGCTGTCATGAGAACAACGCGATGCCATTGGTCGAA
ATGATAAACGAATTACCGATGCATGATATTCTGTTCACATGATACTGCCA
CCCCCCCTCCCGCAATGCGGGAGAATGATGATCAGCTCTACGGTTTATCC
TTGTAAAACGTAGCCTCGGCCGGCATGTCGCTGCGTCCCTTCGTTGAAGG
CATGCGAAGTTGACGGTCTAACGTCTACGGCATGCGTTTATATGAGCAAA
CTCCTCCTTTTAACGTCGGACAACTTAAGGCATGCAAAATCTGAGTACCT
CCCCCCCGCTTCCGTCCCCTGTCCTCCTCTCCCTCTCTGTCCACTTTCTC
CGATTTGATGTTTCCGATGCGATACCCCCGATGCGATATCTCCGATACTG
CCTGCTAGCGTCGGCCCGGGAAAGCAGAGTCTCGTGGAGCGACCGCATGA
TGCGAAGAGCCACCGCTGAGCACGGCCCGCCGCCACCATCGATGCAGGCG
CAGCAGACCTTTCTCCCCTCGACCCCTTCGACAACCACCGCCTCGATCAC
AAGCACTAGCGGCCCCGCCACGGGGAACTCCAGCCGGGATGCGTTCTTGG
GATCGAACCACGTTCGCAGTGAGTCTTGTGTTTGTTTGTTCATGGGCAAG
GGACATTGTGTTGAGGTCGTGTGTGTGTGCGTGCCTTTTTTTGTTTCTGT
CGCGTTCTTTTTTTTCGTCCTTTCGCGGTCACATTGGTAAAAAAAATTTC
TCGCTGGCGTTGGTGCCCTTTTTTTCAAGGTGGTGTTTGGTTTTGTGCTG
GTGCTGGTGCAAGTAATTGGTGGTGCTGCAGCGGTGTTATTGAGGACAAG
GTCTACAAACAGGCAGGAAGCGCTTGTTTGGTTGGCGGCGCGTTAAGGCT
GCGGTTTGTCGTGTCCCGCTAGCCTCAATGCTTGCCTCTCGTCACTCACT
TGCCACACCACTACCTTCCGCTGTCCCTCGCCCTCGTTCGGCGAAACACG
TCGCTTAGCGAAGCACCCACCATCGCCTGCTCGCTGCTGACAGCATGTTC
TGACAGCATCTATCTCCGGCACTCTGTACCAGAACATCGAAACCAACACC
GACGCACCATAAAAAAATCCCTGTACTGTATCACCAGCAGTATGCGGTAC
CACGCAAGTCGAAACCAACCCCATGATATATCAAACGAAATCTCAACAGG
TCCGACGATGCCGGCGTCGCCGGTCCAGCATCGCTTCGAGACCCTCGCTT
CCGACTTCTTGCAGCCGGCTTCCTCCTCCTCCTCGTCGTCGGCGGCGATG
GTGGCGGCGGGGACGGCGACGGCAGCGGGGGCCAAGAAGAGCCGCAAGAT
TTCGCTTCCGAAGGTCGGTGGATACGCAGAAAAACACACAACTGTTTATT
GAAGTACGGCGTTTCGGCTTGGTGTTGCGGACCCATGATGAGTCGTTATT
TCCATTGGCGTTGGTGGTGGTGTTGTTGTCTACTACATACCTGGTTCTAA
ATACTTCGAAGTAGTTTGTGTTTTTGGTATTCTGAGTTCAAATGAAATGC
CGAAAGTAGTTCGTTTCTCGTTTGTGTTTGTCTCGGGTCGTGCTGCATCC
CCTACAGAAGTGTTCGCGAACAGCAGAAATTATAACCCCAGGGTGCACCG
TGTCATTGCAAGACCTACGAGTAGTGGTGTTTTATTGTTGTAGCAGGTAG
GGTGTTGTCCGTGGAAGTACTGTCGGAACGAAGACGACACCGAGTAACCT
ATCCGCGAATAGCCTGTAGCCTTTCAAGATCTGGCGAGCTATCTCCACCG
TAGGGTTCCTTTCGAGAGTGGCGTCTCCCTCGACGTTAGCGTCCCCTTCA
GTGCAGAATAGAACATAGGCGCGGATGGCTAGGGTTGCTAGGGTTAGGGT
TAGGGAAGCCCCGAACACGAACCAGAAGTAATGTAGCTGCCAAAACTTGG
TGGACATCTGACGGGCTGTCTCCGGCCGTATCGAAACCCCTTAAACCTCC
CACAGCAGCCGTGATATACACCAAAACAACATGCCATGTAAGGGGTACCT
CGTGCCAAGGCCGAATGATGACTTGAATTTGCCTCTCTTCGCGTGTCTCT
CAACCCGTCAACCCCACCATCACCAACGACGGTTCAGTCCATCGGCCGCA
AGATCCAAGCCTCCCGAAGCAGCGGCGTAGTCGGCCGCAGAGAAGCCTCC
TTCTCAGCGACGGCGCCCCCGCTTCTGCCGGTAGAGGGGGGGGGGGGCTC
CGTGTGTGCGGTGGCTCACCGGGCGGCATTGACGCTCGAGGAGCAGTGGG
AGACCTTGTCGGACATGGCTCTGTGCACGTCGAGGCTGTCTCCTGAGGAT
GTGGCGAGGGTGCAGGTAAGGGAAGAACTCGTAAAATCACATGGTAGGGT
GATCGGAAGTCGCTGCAGTCGGATGATGTAGTAGACAAGATGTGGAGATG
AGGAAGGAGTGTGCAAATAAGTTGGTGAGGTGGTGTGATGCTTGCTGCAG
TCGGATGTATCAGGGAAGATGTGCGGGTGAGAGAGGTTTGAATGTATAAA
CATAAGAGAAATGCAACTAGTGAGGTGGTCGGACGTCACAGCAGTGGGAT
GTATTAGAGAAGATGTGAAGGAATGACAGGAGCGTATGAAAAGCGAGGTG
GTCGGACGTCACAGTAGTGAGATGTATTAGAGATGATGTAAAGGTGAGAG
AGAACGTGCGAAACACGAAATGCTGAAGCGGTGGCAAGTGGCTTCAGTCG
TATCGCACACGTGCCGGCATGAGGATTTTTCTTGTAGAGGGGCGTTGACG
CTGTTCACGTGAAGGTCAAATGGTTTACCTGCCACTCGGCGGTTGCGTTT
GCGGCGACCTTTACGTGTGTCTTTTGTGGTGTTTTGCTGTCTAAAGTTGC
CCTCAGTCAAGAGCACAAGCGCTCGGCAGGGCATGCGTTCTCATTCTCTA
CGGGCCCGAAAAGGAAACCTGCCTAACGTTTCTGTGTTTTTTGTTCTTTT
GCACCAACACCTACACCCAAAAAGCAAACGAGAACTGCCCCAACCTTTTT
GTATTTTGCACCAAGACAAACAAAAAATCCCCAGTGACGCCGCCCCATTC
CTCTCTTCCCCCCTCCTCCCTATTATTGTTTGACTCCCGCCACAAATGTG
TCCCTGTCTTGATTTCCGCGAAGCTTTCGGGCATCCCTCGCCTGGAGTCC
GCACGCCTCCTCCACTTGCACGGGGGTCTGGCCCTCCTCCCCGGGGACGG
CGCTGCGTCCCAAGCGGCGTCTGCCTCGCAAGCGGCTGCTGCTGCGGCGG
CGGCGAGCAGCGCGTTGTTCTACAACCCTTTCGAGGAGGCGGTCGCAGGG
ATGGACGACGAGGAGTCGGACAACGGGGATGGGGACATCGATAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1631:2589..7033-

>mRNA_Ecto-sp13_S_contig1631.4571.1 ID=mRNA_Ecto-sp13_S_contig1631.4571.1|Name=mRNA_Ecto-sp13_S_contig1631.4571.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1143bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1631:2589..7033- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCCTCTGGCGGGCAGGGGGGCGGGGGAGGGCGGCTGGCTGGTGCTGCG
GAAGCACTTGCTGCAGTGGCTGCTGGCGGTGAGCGCCCGGTGCGGAGACG
TGCAGGCTTCGAGCGAGTACTTCGCCGGGCTGGCGGAGCTGACGGCGGCC
CTCGAGGACGAGCGGGGCAAGGCCGACCGATATCTCGTGACGCTGCCGCT
TCCGCCCTCCGAAGGCGTGTCTCCCGGGGGGCGCATGCTCCCCCCCGTCC
CGTTGGTGATGGAAGCACTGGGGAACGTTGCGACTGCCTCTTCAACGGCA
GGAGCGGCTCCGTCGATAGCGTCGGCCCGGGAAAGCAGAGTCTCGTGGAG
CGACCGCATGATGCGAAGAGCCACCGCTGAGCACGGCCCGCCGCCACCAT
CGATGCAGGCGCAGCAGACCTTTCTCCCCTCGACCCCTTCGACAACCACC
GCCTCGATCACAAGCACTAGCGGCCCCGCCACGGGGAACTCCAGCCGGGA
TGCGTTCTTGGGATCGAACCACGTTCGCAGTCCGACGATGCCGGCGTCGC
CGGTCCAGCATCGCTTCGAGACCCTCGCTTCCGACTTCTTGCAGCCGGCT
TCCTCCTCCTCCTCGTCGTCGGCGGCGATGGTGGCGGCGGGGACGGCGAC
GGCAGCGGGGGCCAAGAAGAGCCGCAAGATTTCGCTTCCGAAGTCCATCG
GCCGCAAGATCCAAGCCTCCCGAAGCAGCGGCGTAGTCGGCCGCAGAGAA
GCCTCCTTCTCAGCGACGGCGCCCCCGCTTCTGCCGGTAGAGGGGGGGGG
GGGCTCCGTGTGTGCGGTGGCTCACCGGGCGGCATTGACGCTCGAGGAGC
AGTGGGAGACCTTGTCGGACATGGCTCTGTGCACGTCGAGGCTGTCTCCT
GAGGATGTGGCGAGGGTGCAGCTTTCGGGCATCCCTCGCCTGGAGTCCGC
ACGCCTCCTCCACTTGCACGGGGGTCTGGCCCTCCTCCCCGGGGACGGCG
CTGCGTCCCAAGCGGCGTCTGCCTCGCAAGCGGCTGCTGCTGCGGCGGCG
GCGAGCAGCGCGTTGTTCTACAACCCTTTCGAGGAGGCGGTCGCAGGGAT
GGACGACGAGGAGTCGGACAACGGGGATGGGGACATCGATAGC
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