mRNA_Ecto-sp13_S_contig16307.4570.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16307.4570.1
Unique NamemRNA_Ecto-sp13_S_contig16307.4570.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig16307.4570.1 vs. uniprot
Match: D8LGR4_ECTSI (Domain repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGR4_ECTSI)

HSP 1 Score: 564 bits (1453), Expect = 1.480e-196
Identity = 367/395 (92.91%), Postives = 370/395 (93.67%), Query Frame = 1
Query:    1 GNVRCWGDAEYGALGAGDETTTGNGDSTIADSVDLGVNGTNTVGAIGGGPCAVFQDGSLKCWGEGFYGQNGQGTADSLGDEPGEMGESLPIVPLGEGVLVESISGGRDYQCAVLQDGGLKCWGRAEGGQLGSEDILTVGDDPDEMGDALPTIDLGSAETAVEVSTASSHTCALLGSGGVKCWGKAFFGNLGLEDFRANVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPRGVSAGQMGDNLPAVNLGTNRTAVALARTVVSTAAXXXXXXXXXXXXXXXTLTPVVAATSQPATSQPVSTPSPTLAAALPTPSPVAPPXPAXVVPVTAXXTPSPTAAIAVEAEEDTDRGGIAGAIDEMDTTVVVAVAAPVGAMLLLGCLVCAAKRKKR 1185
            GNVRCWGDAEYGALG GDETTTGNGD TIADSVDLGVNGTNTVGAIGGGPCAVFQDGSLKCWGEGFYGQNGQGTADSLGDEPGEMGESLP VPLGEGVLVESISGGRDYQCAVLQDGGLKCWGRAEGGQLGSE ILTVGDDPDEMGDALPT+DLGSAETAVEVSTASSHTCALLGSGGVKCWGKAFFGNLGLEDFRANVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPRGVSAGQMGD+LPAVNLGTNRTAVALARTVVSTA XXXXXXXXXXXXXXX    VVAATSQP     VSTPSPTLAAALPTPSPVAP X  X   VT XXT SPTAAIAVEAEEDTDRGG+AGAID MD TVVVAVAAPVG MLLLGCLVCAAKRKKR
Sbjct:  162 GNVRCWGDAEYGALGGGDETTTGNGDGTIADSVDLGVNGTNTVGAIGGGPCAVFQDGSLKCWGEGFYGQNGQGTADSLGDEPGEMGESLPTVPLGEGVLVESISGGRDYQCAVLQDGGLKCWGRAEGGQLGSEAILTVGDDPDEMGDALPTVDLGSAETAVEVSTASSHTCALLGSGGVKCWGKAFFGNLGLEDFRANVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPRGVSAGQMGDSLPAVNLGTNRTAVALARTVVSTAXXXXXXXXXXXXXXXXXXXXVVAATSQP-----VSTPSPTLAAALPTPSPVAPXXXXXXXXVTTXXTXSPTAAIAVEAEEDTDRGGVAGAIDGMDKTVVVAVAAPVGVMLLLGCLVCAAKRKKR 551          
BLAST of mRNA_Ecto-sp13_S_contig16307.4570.1 vs. uniprot
Match: A0A0K1EC39_CHOCO (Uncharacterized protein n=1 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1EC39_CHOCO)

HSP 1 Score: 190 bits (483), Expect = 3.050e-52
Identity = 101/199 (50.75%), Postives = 128/199 (64.32%), Query Frame = 1
Query:    7 VRCWGDAEYGALGAGDETTTGNGDSTIAD---SVDLGVNGTNTVGAIGGGP-CAVFQDGSLKCWGEGFYGQNGQGTADSLGDEPGEMGESLPIVPLGEGVLVESISGGRDYQCAVLQDGGLKCWGRAEGGQLGSEDILTVGDDPDEMGDALPTIDLGSAETAVEVSTASSHTCALLGSGGVKCWGKAFFGNLGLEDFRA 591
            ++CWGD  YG LG GD T  GN   T+ D   +VDLGV+G  T   +G    CA+   G++KCWG   +GQ G G AD  GD PGEMG++LP V LG G LV +++ GR + CA+L+DG +KCWG  E GQLG  D    GD P EMGDALP +DLGS + AV ++    HTCALL  G +KCWG +++G LGL D  A
Sbjct:  204 LKCWGDNGYGQLGLGDVTPRGNLPGTMGDDLPAVDLGVDGAGTAVFMGAAHVCALLTRGAVKCWGANGHGQLGLGDADHRGDAPGEMGDALPDVDLGAGNLVAALALGRMHSCALLKDGSVKCWGDNERGQLGLGDTELRGDAPGEMGDALPRVDLGSGKRAVAITAGDLHTCALLDDGSLKCWGDSYWGQLGLGDREA 402          
BLAST of mRNA_Ecto-sp13_S_contig16307.4570.1 vs. uniprot
Match: A0A7C1YKS1_9ACTN (Fibronectin type-III domain-containing protein (Fragment) n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1YKS1_9ACTN)

HSP 1 Score: 189 bits (480), Expect = 2.040e-50
Identity = 108/266 (40.60%), Postives = 138/266 (51.88%), Query Frame = 1
Query:    7 VRCWGDAEYGALGAGDETTTGNGDSTIADS---VDLGVNGTNT-VGAIGGGPCAVFQDGSLKCWGEGFYGQNGQGTADSLGDEPGEMGESLPIVPLGEGVLVESISGGRDYQCAVLQDGGLKCWGRAEGGQLGSEDILTVGDDPDEMGDALPTIDLGSAETAVEVSTASSHTCALLGSGGVKCWGKAFFGNLGLEDFRANVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPRGVSAGQMGDNLPAVNLGTNRTAVALA 792
            +RCWG    G LG G  T+ G+    + D+   +DLG   T   V       CA+  DGSLKCWG  F G  GQG  ++LGD+P EMG++LP + LG G     + GG  + CA+L +G +KCWG    GQLG      +GD+P EMGD LP+IDLG+  TAV ++  S HTCA+L  G +KCWG      LGL D                                        +  RG   G+MGDNLPAVNLGT RTAVA++
Sbjct:   61 LRCWGQGTNGQLGQGSTTSIGDNPGEMGDNLPAIDLGTGHTAARVATTYSRTCAILDDGSLKCWGNNFGGSLGQGNTNNLGDQPNEMGDNLPSIDLGTGRTAVMVVGGLSHVCALLDNGTVKCWGHNTAGQLGQGHTNDIGDNPGEMGDNLPSIDLGTGRTAVAIAAGSHHTCAILDDGSLKCWGANTSAQLGLGD----------------------------------------AQNRGDQPGEMGDNLPAVNLGTGRTAVAVS 286          
BLAST of mRNA_Ecto-sp13_S_contig16307.4570.1 vs. uniprot
Match: A0A4U1JAV6_9DELT (Uncharacterized protein n=1 Tax=Polyangium fumosum TaxID=889272 RepID=A0A4U1JAV6_9DELT)

HSP 1 Score: 187 bits (474), Expect = 4.230e-50
Identity = 113/268 (42.16%), Postives = 139/268 (51.87%), Query Frame = 1
Query:    1 GNVRCWGDAEYGALGAGDETTTGNGDSTIADS---VDLGVNGTNTVGAIGGGP-CAVFQDGSLKCWGEGFYGQNGQGTADSLGDEPGEMGESLPIVPLGEGVLVESISGGRDYQCAVLQDGGLKCWGRAEGGQLGSEDILTVGDDPDEMGDALPTIDLGSAETAVEVSTASSHTCALLGSGGVKCWGKAFFGNLGLEDFRANVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPRGVSAGQMGDNLPAVNLGTNRTAVALA 792
            G V+CWG+   G LG G   + G+    + D+   VDLG   T    A G    CA+  DG +KCWG G YG  G G     GDEPGEMG++LP V LG G +V +ISGG+ + CA+L DG +KCWG    GQLG+ D  T GDDP EMGDALP IDLG+   A+ ++    HTCALL  G VKCWG    G+ G  D                                        S  RG   G+MGD LPAV+LG   TA+A+A
Sbjct:  244 GRVKCWGNNSNGVLGLGHSKSVGDEPGDMGDALPFVDLGTGATAVSIAAGVSHICALLADGRVKCWGYGTYGALGLGDMKDRGDEPGEMGDALPAVDLGAGAVVRAISGGQYHSCALLADGRVKCWGHGFSGQLGTGDKETRGDDPGEMGDALPAIDLGTGAKALAIAAWGQHTCALLHEGRVKCWGNGINGSTGQGD----------------------------------------SLSRGDEPGEMGDVLPAVDLGVGVTAIAIA 471          
BLAST of mRNA_Ecto-sp13_S_contig16307.4570.1 vs. uniprot
Match: A0A7C1YRK2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7C1YRK2_9ACTN)

HSP 1 Score: 186 bits (472), Expect = 3.200e-49
Identity = 110/268 (41.04%), Postives = 138/268 (51.49%), Query Frame = 1
Query:    1 GNVRCWGDAEYGALGAGDETTTGNGDSTIAD---SVDLGVNGTNTVGAIGGG-PCAVFQDGSLKCWGEGFYGQNGQGTADSLGDEPGEMGESLPIVPLGEGVLVESISGGRDYQCAVLQDGGLKCWGRAEGGQLGSEDILTVGDDPDEMGDALPTIDLGSAETAVEVSTASSHTCALLGSGGVKCWGKAFFGNLGLEDFRANVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPRGVSAGQMGDNLPAVNLGTNRTAVALA 792
            G V+CWG+   G LG G   T G+  +   D   +VDLG   T T  A G    CA+  DG++KCWG    GQ GQG  D +GD PGEMG++LP V LG G    +IS G  + CA+L DG +KCWG    G+LG  D+   GD   EMGD LP ++LG+  TA  VS  ++HTCALL  G VKCWG  F G LG  D                                            G + G+MGDNLP V+LG+ RTA+A+A
Sbjct:  128 GTVKCWGNGGSGRLGQGSTDTIGDSTAERGDGLPTVDLGTGRTATAIAAGQQYTCALLDDGTVKCWGNNSSGQLGQGNTDDIGDNPGEMGDNLPAVDLGTGRTATAISAGSSHTCALLDDGTVKCWGSGSFGRLGYGDLTKRGDGAGEMGDNLPPLELGTGRTATAVSAGNTHTCALLDDGTVKCWGGGFNGQLGTGDVTG----------------------------------------LGDNPGEMGDNLPPVDLGSGRTAIAIA 355          
BLAST of mRNA_Ecto-sp13_S_contig16307.4570.1 vs. uniprot
Match: A0A150G0E4_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G0E4_GONPE)

HSP 1 Score: 177 bits (450), Expect = 3.640e-49
Identity = 109/268 (40.67%), Postives = 137/268 (51.12%), Query Frame = 1
Query:    7 VRCWGDAEYGALGAGDETTTGNGDSTIADS---VDLGVNGTNTVGAIGGG---PCAVFQDGSLKCWGEGFYGQNGQGTADSLGDEPGEMGESLPIVPLGEGVLVESISGGRDYQCAVLQDGGLKCWGRAEGGQLGSEDILTVGDDPDEMGDALPTIDLGSAETAVEVSTASSHTCALLGSGGVKCWGKAFFGNLGLEDFRANVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPRGVSAGQMGDNLPAVNLGTNRTAVALA 792
            V+CWG A  G LG GD    G+    + D+   VDLG   T  V  + GG    CAV  +G  KCWG     Q G G  ++ GD PGEMG+SLP V LG G    +++GG  + CAVL +G  KCWG +  GQLG  D    GD+P EMGD+LP +DLG+  TAV ++  + H+CA+L +   KCWG  +FG LG  D                                           RG   G+MGDNLP V+LGT RTAVALA
Sbjct:   50 VKCWGRAANGQLGYGDTNNRGDNPGEMGDNLPFVDLGTGRTAVV--LAGGHYHTCAVLDNGRAKCWGWNNAAQLGYGDTNNRGDNPGEMGDSLPFVDLGTGRTAVAMAGGELHTCAVLDNGRAKCWGVSSLGQLGYGDTSIRGDNPGEMGDSLPYVDLGTGRTAVVITAGTYHSCAVLDNARAKCWGPYYFGQLGYGDLNT----------------------------------------RGDGPGEMGDNLPYVDLGTGRTAVALA 275          
BLAST of mRNA_Ecto-sp13_S_contig16307.4570.1 vs. uniprot
Match: A0A835T669_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835T669_9CHLO)

HSP 1 Score: 180 bits (456), Expect = 2.400e-48
Identity = 107/267 (40.07%), Postives = 137/267 (51.31%), Query Frame = 1
Query:    1 GNVRCWGDAEYGALGAGDETTTGNGDSTIADS---VDLGVNGTNTVGAIGG-GPCAVFQDGSLKCWGEGFYGQNGQGTADSLGDEPGEMGESLPIVPLGEGVLVESISGGRDYQCAVLQDGGLKCWGRAEGGQLGSEDILTVGDDPDEMGDALPTIDLGSAETAVEVSTASSHTCALLGSGGVKCWGKAFFGNLGLEDFRANVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPRGVSAGQMGDNLPAVNLGTNRTAVAL 789
            G+V+CWG   YG LG GD +  G+G   + D+   + LG   T    ++GG   CA+  +GS+KCWG   YGQ G G   S GD PGEMG++LP + LG G   ++IS G  + CA+L +G +KCWG    GQLG  D     D P EMGD LP + LG+  TA  +S    HTCALL +G VKCWG    G LGL D                                        +  RG   G+MGD LPA+ LGT RTA+A+
Sbjct:  181 GSVKCWGYNAYGQLGLGDTSDRGDGPGEMGDTLPAITLGTGRTAAAISVGGYHTCALLDNGSIKCWGYNAYGQLGLGDTSSRGDGPGEMGDTLPAITLGTGRTAKAISAGGYHTCALLDNGSVKCWGANGNGQLGLGDTSYRSDGPGEMGDTLPAVVLGTGRTATAISAGYYHTCALLDNGYVKCWGYNSDGQLGLGD----------------------------------------TSYRGNGPGEMGDTLPAITLGTGRTAMAI 407          
BLAST of mRNA_Ecto-sp13_S_contig16307.4570.1 vs. uniprot
Match: A0A0K1ECX1_CHOCO (Uncharacterized protein n=1 Tax=Chondromyces crocatus TaxID=52 RepID=A0A0K1ECX1_CHOCO)

HSP 1 Score: 176 bits (446), Expect = 4.890e-47
Identity = 109/276 (39.49%), Postives = 133/276 (48.19%), Query Frame = 1
Query:    1 GNVRCWGDAEYGALGAGDETTTGNGDSTIADSVDLGVNGTNTVG-AIGGGP---CAVFQDGSLKCWGEGFYGQNGQGTADSLGDEPGEMGESLPIVPLGEGVLVESISGGRDYQCAVLQDGGLKCWGRAEGGQLGSEDILTVGDDPDEMGDALPTIDLGSAETAVEVSTASSHTCALLGSGGVKCWGKAFFGNLGLEDFRANVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPRGVSAGQMGDNLPAVNLGTNRTAVALARTVVSTAA 816
            G V+CWGD   G LG GD  T G G   +   +     GT +   A+  G    CA+   GS+KCWG   YGQ G G   + G++PGEMG++LP V LG G    +I  G  + CA+L DGG+KCWG  + GQLG  D+   GDD  EMGD LP +D               HTCALLG GGVKCWG    G LGL D  A                                        RG  AG+MGD+LPAV+LG  + AVA+A     T A
Sbjct:   63 GRVKCWGDNWVGQLGIGDTRTRGEGPGQMGTRLPAAELGTGSAAVAVAAGAWHSCALLHGGSVKCWGFNEYGQLGVGDYRNRGNDPGEMGDALPAVDLGAGKTATAIVAGAWHSCALLHDGGVKCWGDNQSGQLGLGDVEARGDDAGEMGDGLPAVDXXXXXXXXXXXXXXXHTCALLGDGGVKCWGDNRSGRLGLGDVEA----------------------------------------RGDDAGEMGDSLPAVDLGAGQAAVAIAAGEAHTCA 298          
BLAST of mRNA_Ecto-sp13_S_contig16307.4570.1 vs. uniprot
Match: L7UHS0_MYXSD (RCC1 repeat-containing protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) TaxID=1278073 RepID=L7UHS0_MYXSD)

HSP 1 Score: 173 bits (439), Expect = 6.980e-47
Identity = 106/268 (39.55%), Postives = 136/268 (50.75%), Query Frame = 1
Query:    1 GNVRCWGDAEYGALGAGDETTTGNGDSTIADS---VDLGVNGTNTVGAIG-GGPCAVFQDGSLKCWGEGFYGQNGQGTADSLGDEPGEMGESLPIVPLGEGVLVESISGGRDYQCAVLQDGGLKCWGRAEGGQLGSEDILTVGDDPDEMGDALPTIDLGSAETAVEVSTASSHTCALLGSGGVKCWGKAFFGNLGLEDFRANVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPRGVSAGQMGDNLPAVNLGTNRTAVALA 792
            G V+CWG    G LG GD    G G   + D+   VDLGV       A G    CA+ +DG++KCWG    GQ G G   + GD  G MG++LP V LG     ++I+ GR + CA+L DG +KCWG  E GQLG  D  + G +PDEMGDALP + LG   TA  ++  + HTCA+L  G VKCWG   +G LGL D                                           RG + G+MGD LP+V+LGT RTA A++
Sbjct:   33 GVVKCWGRNTEGQLGLGDTVNRGAGPREMDDALAFVDLGVGRVAKALATGYEHACAILEDGAVKCWGYNMNGQLGLGVRSNHGDSQGSMGDALPTVNLGTKRTAKAITAGRAHSCAILDDGAVKCWGGNEYGQLGLGDKASRGVEPDEMGDALPEVKLGVGRTATAIAAGNLHTCAILDDGAVKCWGDNGYGRLGLGD----------------------------------------KSGRGDAPGEMGDALPSVDLGTGRTAKAIS 260          
BLAST of mRNA_Ecto-sp13_S_contig16307.4570.1 vs. uniprot
Match: A0A840I6P4_9ACTN (Alpha-tubulin suppressor-like RCC1 family protein/outer membrane protein OmpA-like peptidoglycan-associated protein n=1 Tax=Conexibacter arvalis TaxID=912552 RepID=A0A840I6P4_9ACTN)

HSP 1 Score: 181 bits (460), Expect = 1.230e-46
Identity = 109/268 (40.67%), Postives = 137/268 (51.12%), Query Frame = 1
Query:    1 GNVRCWGDAEYGALGAGDETTTGNGDSTIADS---VDLGVNGTNTVGAIGGG-PCAVFQDGSLKCWGEGFYGQNGQGTADSLGDEPGEMGESLPIVPLGEGVLVESISGGRDYQCAVLQDGGLKCWGRAEGGQLGSEDILTVGDDPDEMGDALPTIDLGSAETAVEVSTASSHTCALLGSGGVKCWGKAFFGNLGLEDFRANVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPRGVSAGQMGDNLPAVNLGTNRTAVALA 792
            G V+CWG    G LG GD    G+    + D+   VDLG   T T  A G    CA+  DGS+KCWG    GQ GQG   + G +PGE+G++LP V LG G    +I+ G  + CA+L DG +KCWG    GQLG  D    GD P E+GDALP +DLGS  TAV VS    H+CALL  G ++CWG    G LGL D                                        ++PRG   G++GD LP V+LG+ RTA A+A
Sbjct:  537 GTVKCWGANNGGRLGLGDTAARGDAPGEMGDALPPVDLGSGRTATAIAAGSSHACALLDDGSVKCWGANASGQLGQGDRAARGGQPGELGDALPPVDLGSGATATAIATGSHHSCALLADGTVKCWGDNGSGQLGLGDTEPRGDQPGELGDALPPVDLGSRRTAVAVSAGRDHSCALLDDGTIRCWGGNSDGQLGLGD----------------------------------------TEPRGDQPGELGDALPPVDLGSRRTATAIA 764          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16307.4570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGR4_ECTSI1.480e-19692.91Domain repeat protein n=2 Tax=Ectocarpus TaxID=287... [more]
A0A0K1EC39_CHOCO3.050e-5250.75Uncharacterized protein n=1 Tax=Chondromyces croca... [more]
A0A7C1YKS1_9ACTN2.040e-5040.60Fibronectin type-III domain-containing protein (Fr... [more]
A0A4U1JAV6_9DELT4.230e-5042.16Uncharacterized protein n=1 Tax=Polyangium fumosum... [more]
A0A7C1YRK2_9ACTN3.200e-4941.04Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
A0A150G0E4_GONPE3.640e-4940.67Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A835T669_9CHLO2.400e-4840.07Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A0K1ECX1_CHOCO4.890e-4739.49Uncharacterized protein n=1 Tax=Chondromyces croca... [more]
L7UHS0_MYXSD6.980e-4739.55RCC1 repeat-containing protein n=1 Tax=Myxococcus ... [more]
A0A840I6P4_9ACTN1.230e-4640.67Alpha-tubulin suppressor-like RCC1 family protein/... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16307contigEcto-sp13_S_contig16307:1..3828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score567.4
Seed ortholog evalue5.3e-159
Seed eggNOG ortholog2880.D8LGR4
Preferred nameRCCD1
Model size1185
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944
Exons5
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
Ec32 ortholog descriptionRegulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
Ec32 orthologEc-07_005320.1
Cds size1185
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462858.7253997-CDS-Ecto-sp13_S_contig16307:0..951681462858.7253997-CDS-Ecto-sp13_S_contig16307:0..95Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16307 1..95 -
1681462858.735153-CDS-Ecto-sp13_S_contig16307:624..8881681462858.735153-CDS-Ecto-sp13_S_contig16307:624..888Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16307 625..888 -
1681462858.7432191-CDS-Ecto-sp13_S_contig16307:1567..18001681462858.7432191-CDS-Ecto-sp13_S_contig16307:1567..1800Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16307 1568..1800 -
1681462858.7517142-CDS-Ecto-sp13_S_contig16307:2435..26831681462858.7517142-CDS-Ecto-sp13_S_contig16307:2435..2683Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16307 2436..2683 -
1681462858.7617834-CDS-Ecto-sp13_S_contig16307:3483..38281681462858.7617834-CDS-Ecto-sp13_S_contig16307:3483..3828Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16307 3484..3828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16307.4570.1prot_Ecto-sp13_S_contig16307.4570.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16307 1..3828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16307.4570.1

>prot_Ecto-sp13_S_contig16307.4570.1 ID=prot_Ecto-sp13_S_contig16307.4570.1|Name=mRNA_Ecto-sp13_S_contig16307.4570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=395bp
GNVRCWGDAEYGALGAGDETTTGNGDSTIADSVDLGVNGTNTVGAIGGGP
CAVFQDGSLKCWGEGFYGQNGQGTADSLGDEPGEMGESLPIVPLGEGVLV
ESISGGRDYQCAVLQDGGLKCWGRAEGGQLGSEDILTVGDDPDEMGDALP
TIDLGSAETAVEVSTASSHTCALLGSGGVKCWGKAFFGNLGLEDFRANVA
LSVAAAGQRTCAILEGGSLKCWGGNSGGQLGLEDSDPRGVSAGQMGDNLP
AVNLGTNRTAVALARTVVSTAAAATAAPTPAPTAAPTTLTPVVAATSQPA
TSQPVSTPSPTLAAALPTPSPVAPPTPAPVVPVTAPPTPSPTAAIAVEAE
EDTDRGGIAGAIDEMDTTVVVAVAAPVGAMLLLGCLVCAAKRKKR
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mRNA from alignment at Ecto-sp13_S_contig16307:1..3828-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16307.4570.1 ID=mRNA_Ecto-sp13_S_contig16307.4570.1|Name=mRNA_Ecto-sp13_S_contig16307.4570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3828bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16307:1..3828- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAACGTGCGCTGCTGGGGCGACGCAGAGTACGGGGCCCTCGGGGCAGG GGACGAGACCACCACCGGAAACGGCGACAGCACCATCGCCGACTCCGTCG ACCTCGGCGTCAACGGTACCAACACCGTCGGCGCGATAGGCGGGGGCCCG TGCGCCGTGTTCCAGGACGGCAGCCTCAAGTGCTGGGGCGAGGGGTTCTA CGGGCAGAACGGGCAGGGCACGGCGGACAGCCTCGGCGACGAGCCCGGGG AGATGGGGGAGTCCCTGCCCATCGTGCCGCTCGGGGAGGGCGTGCTGGTG GAGTCTATCTCCGGGGGAAGGGACTACCAGTGCGCCGTCTTGCAGGTGGG GGGGTGTTACGTACGGTATGTGTGTGGAATTGTGGATTTGTTCGTTATGT ATTTTTTGCTTGATATGACCCAACGACTCCGTCCATCTCTATATATGGAA AATAGTCTAAGATAGACTAGCAATGAATCCAAAGCGTCAGCGGAAGTTAC CTGTATTCCCATCGACCGCGCTACCTGACCAATGAAAGGACGCTAGTCTT GTAGCGGGATTGTTTGTGTGTCTGTGTTTTGTTTGTGTTTTTTTTTAGCA TCGGCTGCCCTGTGTGTGTGCGTTGTGCTGTTGTAGTTAAATCACCGACC GCGCTAACCATCTGACCAATGGAAACACGTCGGTGGTGTCAGCGGATAAA ATCATGGTGTGCTGCCTGGAGGGGGCCGAACATTCGATAAACTCGTAACG CGGTGAATGTAAAAATTATGTGACAGAATCCAAGACGAATATGTCGGTGC CTTCTTTGCTACACGTTTGCAGCAGCACCAATCGGCTGACCGTTTACATT TTGTCAAGCCTCAAGTGCGGTGTGTGTGTTCGACTGGCACTTTTCGTGAT GAGAGTCGCCCGCGAGTAGCGGTGTAGAAGGTCTAACTGAAAATCCCCCG AAAGTGTGACGATGGATGTGTACGCGGGCCACCTGCGCTGCATTGCATGC ACAGTACACACAATTATCGCGAGCGACCGCAAGATCAGTAAAGCATCTAT CACACCAACCACAAAAACAAAATCTTCCTATTGGCACGAAGCACACCCAC CGCCGCCGCTGCTCCTGTCATTTCCGCGTTCCCCAACTGCACCAGGACGG CGGCCTGAAGTGCTGGGGCAGGGCGGAGGGCGGTCAGCTCGGGAGCGAGG ACATCCTCACCGTTGGCGACGACCCCGACGAGATGGGCGACGCGCTGCCG ACCATTGATCTGGGATCCGCGGAGACGGCGGTGGAGGTGTCTACGGCCTC CTCGCACACCTGCGCCCTCCTCGGGTCCGGCGGCGTGAAGTGCTGGGGCA AGGCCTTCTTCGGAAACCTGGGGCTCGAGGACTTCAGAGCAAAGTGAGTC GTCAGACCGTGGGCGGCTGTTTGCTTGTCGAATGCCTCTGGAGGAGTCCA CAGCAAAGTATGTGTGTGCGTCGGTGTCTCTCTGTCTGAATCGAATACTA GGTAGCGTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCT CCCTCTCTCTCTCTCTCTCGCTGCTCTCTCTCGCTGCTCTCTCTCTCTCT CCATGTATCTCTCTCTCTATCTCTCTCTCTCGCAATACACAACCACAACC AACAACCCCCCGCCCCGAAGAATAAATAAAATTTAGTCTATGGTACGCAG CTGTCATCCGTACGCATGAAGGTAAGCACATGATGCCACACACCCTTGCA GGAGGCAGCGCACCCTCCATGCGACTCGTCGAATACCTCACAGCGCTGTG CGCTTGGTGATGTTAGAGCCTGGTCCGGTGAGAACCCGGTGTGCTCCGTC CGGGCGTTGTAGGGGTGCGAGGTCAATGGTCTACCGACTACGGCATGCAC GACTATGAGTACCCCCCTACCCCTCGCCCCCGCCGAAAAATCCTCCTCCG AACCGAAAAACAAAACAGGGGCCACGCTCCGAGCACGATGGGGGACCTCC TCCCCCTGGTGGACCTCGGTACCGACAGCGTCGCCCTCAGCGTCGCCGCC GCGGGACAACGCACCTGCGCGATCCTCGAAGGCGGGAGCCTCAAGTGCTG GGGGGGGAACTCGGGGGGCCAGCTGGGCCTGGAGGACAGCGACCCTAGGG GCGTATCGGCCGGGCAGATGGGGGACAATCTCCCGGCGGTAAACCTCGGG ACCAACCGCACGGCGGTGGCGCTTGCGCGGACTGTCGTGTCCACCGCGGC GGCTGCCACCGGTGAGAGGAAGAGATTTCTATTTTCTGTGTTTTGTCTTG GTTTTTTTACACAACAAATTATTCGATCCCTTCTTTCACAGCAGATTAAG ATCTGTGTTGATTTTGACGTAACATAATGTTCGATCTCTTCTTTCACAGT AGGTTAAGAGCCTGAAGAAGGGTCAGCGGAAATACTGCTGTCTGCGCTGG TGTTTCTACGATTCCGCGTCGTCTTCTCGTGGCGTAGCGGTCGCAAATCG CCTGCTGGCGTCGTGGTGGTTGGTGTGACCGATTTATTCGCCTTCCATTT TGTTTTTGTTTTTTGCCGCTGCGGCAGCCCGTCCCCCACCCCCCTCGCAC CTGTGATACACCCTCGGTCTGATTACGTTGTCTTGATGGCGTGCTGCAAC TCATCTGAGGATCCACTCGCCGTCGGAAATTTGTCGGCGTCGGTGATGAC AGCAATGGTTGGCGCGTGGATCCCCACAAAAGAAATGAAAAGGAAGTTAT GCATACATAGCTTTTCTAGGAAACTTCCTTTGAACCCCCGTCGCCGTCGC CGATTGTTGCTCCTACCCCGGCGCATGGATCCCCACATCTCAAGAAGTCA CCGTACCCAACGCTTCGTACAAATATGCGTATAGTTCCCAATTTGTTTCG ACCCCCCCCTCCCCTGTTTCCCTGTCGCCGTTGCCATCAGCTGCTCCTAC CCCTGCACCGACGGCCGCTCCTACCACCCTGACCCCCGTGGTTGCGGCTA CGTCCCAGCCGGCTACGTCCCAGCCGGTTTCGACTCCGTCGCCTACCCTC GCTGCGGCCTTGCCGACGCCGTCGCCCGTGGCGCCACCCACCCCTGCCCC TGTCGTCCCTGTCACGGCGCCTCCCACTCCGAGCCCCACCGCCGCCATCG CGGTCGAGGCCGAGGAGGACACGGACAGGGGGGGAATCGCTGGGGCCATC GACGGTACGTGTCGATCGGGTCTAGAGACTGTTGGGGTTGGATTGGAATC GACTTGCTGTTGACAGACTGTTGAACGCTGCGATGGAGAGCCTGCGAGGT ATTGTCCAGAGAAAAACAAAACCACCGTCGTCGCGAGCCAGTAGCCCAGG CTAACAGCTAGAGTAGAGTGGTCTTTTGAGGCCCCGCTTTTTTTTTTGAG CCGCCGTTCATGCTCGGAGTTCGGAGTCGTGCGGCAGGATTTTGATAAGG TATGCGCCCTTTAGACTCGTGTTGAACTGCGTGTGCTGCGTCTAGTCTGC GGCGTTAGGGTTGTCTCGAGAAAGAAGGCAATAACTCAGTCGATTTGCCG TAGAACGACCCCCCTACAAAAGCTCGTTTTTTGTGGTCGTTTTTTTCCTG CTCACTCCGTTGCGGGCGTGTGCCTTGTCCCTTCATTCCTCTTTCTCGTC TGATTCTTTCTTGCGCACGTTTTTTTTTGTGCGACGGACGACATTTGCGT ATATTACTCGCGCATCCCGCCCGGCCGCCGCAGAGATGGACACCACCGTT GTGGTGGCCGTCGCCGCCCCCGTGGGGGCGATGCTCTTGCTCGGCTGCCT CGTGTGCGCCGCGAAGCGGAAGAAGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16307:1..3828-

>mRNA_Ecto-sp13_S_contig16307.4570.1 ID=mRNA_Ecto-sp13_S_contig16307.4570.1|Name=mRNA_Ecto-sp13_S_contig16307.4570.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1185bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16307:1..3828- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAACGTGCGCTGCTGGGGCGACGCAGAGTACGGGGCCCTCGGGGCAGG
GGACGAGACCACCACCGGAAACGGCGACAGCACCATCGCCGACTCCGTCG
ACCTCGGCGTCAACGGTACCAACACCGTCGGCGCGATAGGCGGGGGCCCG
TGCGCCGTGTTCCAGGACGGCAGCCTCAAGTGCTGGGGCGAGGGGTTCTA
CGGGCAGAACGGGCAGGGCACGGCGGACAGCCTCGGCGACGAGCCCGGGG
AGATGGGGGAGTCCCTGCCCATCGTGCCGCTCGGGGAGGGCGTGCTGGTG
GAGTCTATCTCCGGGGGAAGGGACTACCAGTGCGCCGTCTTGCAGGACGG
CGGCCTGAAGTGCTGGGGCAGGGCGGAGGGCGGTCAGCTCGGGAGCGAGG
ACATCCTCACCGTTGGCGACGACCCCGACGAGATGGGCGACGCGCTGCCG
ACCATTGATCTGGGATCCGCGGAGACGGCGGTGGAGGTGTCTACGGCCTC
CTCGCACACCTGCGCCCTCCTCGGGTCCGGCGGCGTGAAGTGCTGGGGCA
AGGCCTTCTTCGGAAACCTGGGGCTCGAGGACTTCAGAGCAAACGTCGCC
CTCAGCGTCGCCGCCGCGGGACAACGCACCTGCGCGATCCTCGAAGGCGG
GAGCCTCAAGTGCTGGGGGGGGAACTCGGGGGGCCAGCTGGGCCTGGAGG
ACAGCGACCCTAGGGGCGTATCGGCCGGGCAGATGGGGGACAATCTCCCG
GCGGTAAACCTCGGGACCAACCGCACGGCGGTGGCGCTTGCGCGGACTGT
CGTGTCCACCGCGGCGGCTGCCACCGCTGCTCCTACCCCTGCACCGACGG
CCGCTCCTACCACCCTGACCCCCGTGGTTGCGGCTACGTCCCAGCCGGCT
ACGTCCCAGCCGGTTTCGACTCCGTCGCCTACCCTCGCTGCGGCCTTGCC
GACGCCGTCGCCCGTGGCGCCACCCACCCCTGCCCCTGTCGTCCCTGTCA
CGGCGCCTCCCACTCCGAGCCCCACCGCCGCCATCGCGGTCGAGGCCGAG
GAGGACACGGACAGGGGGGGAATCGCTGGGGCCATCGACGAGATGGACAC
CACCGTTGTGGTGGCCGTCGCCGCCCCCGTGGGGGCGATGCTCTTGCTCG
GCTGCCTCGTGTGCGCCGCGAAGCGGAAGAAGAGG
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