mRNA_Ecto-sp13_S_contig16303.4569.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16303.4569.1
Unique NamemRNA_Ecto-sp13_S_contig16303.4569.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16303.4569.1 vs. uniprot
Match: A0A6H5KAF7_9PHAE (FAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF7_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 1.050e-76
Identity = 132/139 (94.96%), Postives = 134/139 (96.40%), Query Frame = 1 
Query:    1 ERKSVIRDTLQESLSRHKRLAFRLVLSCMAPVLAGGASLPAITEEEIVAAEKKCRMEEGGADMLDRPPESFREAVLPEHLRYKAQFEYKAGIMSKGIAALIISASDPDLKEAASPVLHGIILDCIRLTTPPPPTPQAAE 417
            ERKSVIRDTLQESLSRHKRLAFRLVLSCMAPVLAGG SLPAITEEEIVAAEKKCRMEEGGADMLDRPPESFREAVLP HLRYKAQFEYKA +MSKGIAALI+SASDPDLKEAASPVLHGIILDCIR TTPPPP PQAAE
Sbjct:   82 ERKSVIRDTLQESLSRHKRLAFRLVLSCMAPVLAGGVSLPAITEEEIVAAEKKCRMEEGGADMLDRPPESFREAVLPAHLRYKAQFEYKARMMSKGIAALIVSASDPDLKEAASPVLHGIILDCIRFTTPPPPAPQAAE 220
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BLAST of mRNA_Ecto-sp13_S_contig16303.4569.1 vs. uniprot
Match: D8LFI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFI6_ECTSI)

HSP 1 Score: 239 bits (611), Expect = 1.200e-70
Identity = 123/130 (94.62%), Postives = 127/130 (97.69%), Query Frame = 1 
Query:    1 ERKSVIRDTLQESLSRHKRLAFRLVLSCMAPVLAGGASLPAITEEEIVAAEKKCRMEEGGADMLDRPPESFREAVLPEHLRYKAQFEYKAGIMSKGIAALIISASDPDLKEAASPVLHGIILDCIRLTTP 390
            +RKSVIRDTLQESLSRHKRLAFRLVLSCMAPVLAGGASLPAITEEEIVAAEKKCRMEEGGADML RPPESFREAVLPEHLRYKAQFEYKA +MSKGIAAL++SASDPDLKE ASPVLHGIILDCIRLTTP
Sbjct: 1151 QRKSVIRDTLQESLSRHKRLAFRLVLSCMAPVLAGGASLPAITEEEIVAAEKKCRMEEGGADMLGRPPESFREAVLPEHLRYKAQFEYKARMMSKGIAALLVSASDPDLKETASPVLHGIILDCIRLTTP 1280
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16303.4569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAF7_9PHAE1.050e-7694.96FAT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LFI6_ECTSI1.200e-7094.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16303contigEcto-sp13_S_contig16303:1210..2111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score242.3
Seed ortholog evalue1.4e-61
Seed eggNOG ortholog2880.D8LFI6
Model size420
KEGG koko:K08874
KEGG Pathwayko05166,map05166
Hectar predicted targeting categoryother localisation
GOsGO:0000123,GO:0000166,GO:0003674,GO:0003712,GO:0003824,GO:0004402,GO:0004672,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006464,GO:0006468,GO:0006473,GO:0006475,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008080,GO:0008144,GO:0008150,GO:0008152,GO:0009889,GO:0009987,GO:0010556,GO:0016043,GO:0016301,GO:0016310,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0016772,GO:0016773,GO:0017076,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0030554,GO:0031248,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034212,GO:0034641,GO:0035267,GO:0035639,GO:0036094,GO:0036211,GO:0043167,GO:0043168,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051716,GO:0060255,GO:0061733,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0140096,GO:0140110,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1903506,GO:1990234,GO:2001141
Exons2
EggNOG free text desc.phosphatidylinositol kinase activity
EggNOG OGsCOG5032@1,KOG0889@2759
Cds size417
COG Functional cat.BDLTU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462858.6804073-CDS-Ecto-sp13_S_contig16303:1209..14761681462858.6804073-CDS-Ecto-sp13_S_contig16303:1209..1476Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16303 1210..1476 +
1681462858.6938329-CDS-Ecto-sp13_S_contig16303:1959..21091681462858.6938329-CDS-Ecto-sp13_S_contig16303:1959..2109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16303 1960..2109 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16303.4569.1prot_Ecto-sp13_S_contig16303.4569.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16303 1210..2109 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16303.4569.1

>prot_Ecto-sp13_S_contig16303.4569.1 ID=prot_Ecto-sp13_S_contig16303.4569.1|Name=mRNA_Ecto-sp13_S_contig16303.4569.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=139bp
ERKSVIRDTLQESLSRHKRLAFRLVLSCMAPVLAGGASLPAITEEEIVAA
EKKCRMEEGGADMLDRPPESFREAVLPEHLRYKAQFEYKAGIMSKGIAAL
IISASDPDLKEAASPVLHGIILDCIRLTTPPPPTPQAAE
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mRNA from alignment at Ecto-sp13_S_contig16303:1210..2111+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16303.4569.1 ID=mRNA_Ecto-sp13_S_contig16303.4569.1|Name=mRNA_Ecto-sp13_S_contig16303.4569.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=902bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16303:1210..2111+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCGCAAGAGCGTCATCAGGGACACGCTACAGGAGTCACTGTCGCGGCA
CAAGCGGCTAGCGTTCCGGCTGGTGCTATCGTGCATGGCGCCTGTGCTCG
CGGGGGGAGCCTCGCTGCCGGCCATCACGGAGGAGGAGATCGTGGCCGCG
GAGAAGAAGTGCCGCATGGAGGAGGGCGGGGCGGACATGCTGGACCGCCC
GCCGGAGAGCTTCCGAGAGGCCGTGCTGCCGGAGCACCTGCGGTACAAGG
CCCAGTTCGAGTATAAGGTGGGTCGGGGGGCGGGTTTGTTGTGTGCTGAT
GGATCTAAGTCGGGGGGGGAGAGGGGGGGGAGCGGGTGCTAGTGGAATTG
TGAAGAGAGAGGGGTCGGCAGGTGAACAAGGTCGTGCTAACGCTTGCGTT
GTTGGGTACTTTGAGTGCCGTTGACACGCCGTTTTATGTTTTCTTCTTGC
GAGGTCGAGATCATGTAACGTGTAATAATCCGCAGATATGAACTCCAGGA
TAAATCAGCAATCTTTTCCTGGTGTCATTGCTGGAAGACACACGCCTTCA
TAAGTGCTGAATGAATCCGATGCTTGTCGAGGCATCATGCCTGCAGAGGG
TGAAAGACTCAAGCTGCAACTCGGCAGCAGCATGCTTGCCAAGGCCTTGG
ACAATACCGCCCGCCCTCTCCTCACGCTAGAATCAACCCTCTTCGTTTCG
GTGCCGCGTGTACGGCTGTTGTATTCCACCCTCCGCGTTTTTTTTTTCAG
GCCGGCATAATGTCCAAGGGCATCGCCGCCCTAATCATCTCAGCCTCGGA
CCCTGACCTCAAAGAGGCGGCCTCTCCCGTCTTGCACGGCATCATCCTGG
ACTGCATCCGGCTCACCACCCCGCCGCCGCCCACGCCCCAAGCCGCCGAA
CC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16303:1210..2111+

>mRNA_Ecto-sp13_S_contig16303.4569.1 ID=mRNA_Ecto-sp13_S_contig16303.4569.1|Name=mRNA_Ecto-sp13_S_contig16303.4569.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16303:1210..2111+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCGCAAGAGCGTCATCAGGGACACGCTACAGGAGTCACTGTCGCGGCA
CAAGCGGCTAGCGTTCCGGCTGGTGCTATCGTGCATGGCGCCTGTGCTCG
CGGGGGGAGCCTCGCTGCCGGCCATCACGGAGGAGGAGATCGTGGCCGCG
GAGAAGAAGTGCCGCATGGAGGAGGGCGGGGCGGACATGCTGGACCGCCC
GCCGGAGAGCTTCCGAGAGGCCGTGCTGCCGGAGCACCTGCGGTACAAGG
CCCAGTTCGAGTATAAGGCCGGCATAATGTCCAAGGGCATCGCCGCCCTA
ATCATCTCAGCCTCGGACCCTGACCTCAAAGAGGCGGCCTCTCCCGTCTT
GCACGGCATCATCCTGGACTGCATCCGGCTCACCACCCCGCCGCCGCCCA
CGCCCCAAGCCGCCGAA
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