mRNA_Ecto-sp13_S_contig163.4568.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig163.4568.1 vs. uniprot
Match: A0A6H5KYD8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD8_9PHAE) HSP 1 Score: 1586 bits (4107), Expect = 0.000e+0 Identity = 1158/1515 (76.44%), Postives = 1187/1515 (78.35%), Query Frame = 1
Query: 403 VGGGRRAMADVKRPTRRRGKMGGAARAIALGLSIGGWASSQGLTAAASDLPAAAAAGSQECRFIVTMWGESSACEQQLDGAAVGCDKKSFSRRADRVQALVGSTPKEAGLGPVREAGSSVWRQVLDFGCVDGRDKLVVSLYDNLTRPLATCEVGETASMESSKAMVCEGAHGMHFKYAVEHTALLAEPIRPQRRAQSVTPTATPTPASVGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAPETPETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVTPETPELTPAPVAAVVPXXXXXXXXXXPTGAPQAPVAAPTPEPTVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPESPAPTALIGTDEPTLAPRVTETXXXXXXXXXXXXXXXXXXXXXXXXXXGAVTASPVASPPPVDIPSSSPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------------------------------------------------------------------------------------------------PGAGAAVTTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEATLSPNTEEVCTEACVVENLTLSSFSATYYDARCEGKDDADLSGCNLSSANSDWNNCRNCIINLESFEDENGVGSVDWPLCPCCVAETLQMDPQTDECIAEAGTAATTPTPTMVGETTLNLRTEANDPDLLMMSFNSEDCTAFGIAVIPGTTPKVMEVSRYTDADGLCNSNFDILVGTECDLESYSWDYSSSSFEYMYTCSTTTSAGRRRLADGGSEAYPIESDAVLCNNGEHFVSLSSLDTGETGLVYATPDAENYDSVTDSQTALSGSDMCGESSDANVVTTMLLEEIEEEGLSGLLGEADESSSEGDGLGYEIIIGIVCAVVLLMVCACFCCYRHRKGKESRAVHMRRNLGYTPDMEAKGEGNFGPTNKHVAITRGGGPQVTPEMLATTSYSQPSHPPTHQRAPSEAPSSIIEDNIANNYRPKTAAKSWKKRKEHKDLTKPVPQQHVIGGSPNSEELKAENSREGSHANSNTRSQASARSEQLSEHSLSQLQMANQTAAAQPNYGYTFEHVDEEGEXXXXXXXARSAATGMSGPSKYAPSGYAPSSHQGGVTHDLMSQYEPSVYEADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHVSGRASVADTAAMSHLGSVMEMDDGGSAYAPSESYVSSYVSSEDDDGRPARSIHPRGGPNDAQAMGGVPTDGGSSSNGGGSGGSYSRHNAHRSGRQXXXXXXXXXXXXXXXXXXXXXXXXXXFEGGSRSYDDEDDESAVGRTAVSMDDLEYYSEDQHAGGMTSGRGAPLTDLEETHGGQRW 4500
VGGGRRAMADV+RPTRRRGKMGGA RA+ALGL+IGGWASSQGLTAAASDLPAAAAAGSQEC FIVTMWGES+ACEQQLDGAAVGCDKKSFSRRADRVQALVGS KEAGLGPVREAGS VWRQVLDFGCVDGRDKLVV+LYDNL RPLATCEVGETAS+ESSKAM CEGAHGMHFKYAVEHTALLAEPIRPQRRAQSVT TATPTPA+V TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX APE P T XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +PVTP TPAPVAAVV XXXXXXXXXX PQAPVAAP+ EPTVG XXXXXXXXXXXXXXXXXXXXXXXXX ESPAPTALIGTDEPTLAPRVT XXXXXXXX GAVTASPVASPPPVD SSSPST XXX X XXXXXXXXX PGAGAAVT XXXXXXXXXXXXXX AEATLSPNTEEVCT ACV +N+T+S FSATYYDARCEGKDD+DLSGCNLSSANS+WNNCR CII+LESFE ENG GSVDWPLCPCCVAETL MDPQTDECIAEAGTA TTP PTM G+TTL L TEANDPDLLMMSFNS+DCTAFGIAVIPGT PKVMEV+ YTDA+GLCNSNFD LVGTEC+LESYSWDYS SSFEYMYTCST+TSAGRRRLADGGSEAYP ESDAVLCNNG HFVSLSS D GETGLVYATPDAENYDSVT+SQTALSGSDMCG S+DANVVTTMLLE+IEEEGLSGLL EADESSSEGDGLGYEIIIGIVC VVLLM CACFCCYRHRKGKESR VHMRRNLG+TPDMEAKGEGNFGPTNKHVAITRGGGPQVTPEMLATTSYSQPSHPPTHQRAPSEAPSSIIEDNIANNYRPKTAAKSWK+RK HKDLTKPVPQQHVIGGSPNSEELKAE+SREGSHANSNTRSQASARSEQLSEHSLSQLQMANQTAAAQPNYGYTFEHV EEGEXXXXXXXARSAATGMSGPSKYAPSG S+HQ GVTHDLMSQYEPSVYEADXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXX HVSGRASVADTAAMSHLGSVMEMDDGGSAYAPSESYVSSYVSSEDDDGRPARSIHPRGGPNDAQAMGGVPTDGG YSRHNAHRSGRQXXXXXXXXXXXXXXXXXXXXXXXXXXFEGGSRSYDDEDDESAVGRTAVSMDDLEYYSED +AGGMTSGRGAPLTDLEETHGGQRW
Sbjct: 2 VGGGRRAMADVERPTRRRGKMGGAGRALALGLTIGGWASSQGLTAAASDLPAAAAAGSQECGFIVTMWGESAACEQQLDGAAVGCDKKSFSRRADRVQALVGSVRKEAGLGPVREAGSPVWRQVLDFGCVDGRDKLVVTLYDNLMRPLATCEVGETASIESSKAMGCEGAHGMHFKYAVEHTALLAEPIRPQRRAQSVTSTATPTPAAVVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAPEMPATEAPEPEPTEPPTAEATSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXITE-------SPVTPGXXXPTPAPVAAVVXXXXXXXXXXXXXXXPQAPVAAPSLEPTVGTTDXXXXXXXXXXXXXXXXXXXXXXXXXXESPAPTALIGTDEPTLAPRVTARVTETPVVXXXXXXXXGPA--------GAVTASPVASPPPVDFLSSSPSTPXXXVPPSSXSDPPTGLAAPPTERPXXXXXXXXXXTPEPPTDSPVLPPFPVPSTPRPTTSPPTAVTXMXXAXTXXXXXXXXXXXXXXXXXSTTSPSTPQXXAARPNAAAFTXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMNPLPREAPSSSPTRSXSSXXXXXXXXXXXXXXSPVVSTETVAPGAGAAVTXXXXXXXXXXXXXXXXXSAAAGEAPAPFSSPAPVATPSSPAEATLSPNTEEVCTTACVEDNVTVSYFSATYYDARCEGKDDSDLSGCNLSSANSEWNNCRYCIIDLESFEAENGEGSVDWPLCPCCVAETLGMDPQTDECIAEAGTAVTTPAPTMFGQTTLELTTEANDPDLLMMSFNSDDCTAFGIAVIPGTPPKVMEVAGYTDANGLCNSNFDKLVGTECELESYSWDYSDSSFEYMYTCSTSTSAGRRRLADGGSEAYPFESDAVLCNNGAHFVSLSSFDGGETGLVYATPDAENYDSVTNSQTALSGSDMCGASTDANVVTTMLLEQIEEEGLSGLLEEADESSSEGDGLGYEIIIGIVCVVVLLMGCACFCCYRHRKGKESRGVHMRRNLGFTPDMEAKGEGNFGPTNKHVAITRGGGPQVTPEMLATTSYSQPSHPPTHQRAPSEAPSSIIEDNIANNYRPKTAAKSWKERKAHKDLTKPVPQQHVIGGSPNSEELKAEDSREGSHANSNTRSQASARSEQLSEHSLSQLQMANQTAAAQPNYGYTFEHV-EEGEXXXXXXXARSAATGMSGPSKYAPSGXXXSNHQDGVTHDLMSQYEPSVYEADXXXXXXXXXXXXXXXXESSSYSYNDGAGXXXXXXXXXXXXXXXRHVSGRASVADTAAMSHLGSVMEMDDGGSAYAPSESYVSSYVSSEDDDGRPARSIHPRGGPNDAQAMGGVPTDGGXXXXXXXXXXGYSRHNAHRSGRQXXXXXXXXXXXXXXXXXXXXXXXXXXFEGGSRSYDDEDDESAVGRTAVSMDDLEYYSEDHNAGGMTSGRGAPLTDLEETHGGQRW 1500
BLAST of mRNA_Ecto-sp13_S_contig163.4568.1 vs. uniprot
Match: D8LQ66_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ66_ECTSI) HSP 1 Score: 1233 bits (3189), Expect = 0.000e+0 Identity = 993/1207 (82.27%), Postives = 1009/1207 (83.60%), Query Frame = 1
Query: 919 MHFKYAVEHTALLAEPIRPQRRAQSVTPTATPTPASVGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAPETPETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAPVTPETPELTPA-----PVAAVVPXXXXXXXXXXPTGAPQAPVAAPTPEPTVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXPESPAPTALIGTDEPTLAPRVTETXXXXXXXXXXXXXXXXXXXXXXXXXXGAVTASPVASPPPVDIPSSSPSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGAGAAVTTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----AEATLSPNTEEVCTEACVVENLTLSSFSATYYDARCEGKDDADLSGCNLSSANSDWNNCRNCIINLESFEDENGVGSVDWPLCPCCVAETLQMDPQTDECIAEAGTAATTPTPTMVGETTLNLRTEANDPDLLMMSFNSEDCTAFGIAVIPGTTPKVMEVSRYTDADGLCNSNFDILVGTECDLESYSWDYSSSSFEYMYTCSTTTSAGRRRLADGGSEAYPIESDAVLCNNGEHFVSLSSLDTGETGLVYATPDAENYDSVTDSQTALSGSDMCGESSDANVVTTMLLEEIEEE-GLSGLLGEADESSSEGDGLGYEIIIGIVCAVVLLMVCACFCCYRHRKGKESRAVHMRRNLGYTPDMEAKGEGNFGPTNKHVAITRGGGPQVTPEMLATTSYSQPSHPPTHQRAPSEAPSSIIEDNIANNYRPKTAAKSWKKRKEHKDLTKPVPQQHVIGGSPNSEELKAENSREGSHANSNTRSQASARSEQLSEHSLSQLQMANQTAAAQPNYGYTFEHVDEEGEXXXXXXXARSAATGMSGPSKYAPSGYAPSSHQGGVTHDLMSQYEPSVYEADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--HVSGRASVADTAAMSHLGSVMEMDDGGSAYAPSESYVSSYVSSEDDDGRPARSIHPRGGPNDAQAMGGVPTDGGSSSNGGGSGGS-YSRHNAHRSGRQXXXXXXXXXXXXXXXXXXXXXXXXXXFEGGSRSYDDEDDESAVGRTAVSMDDLEYYSEDQHAGGMTSGRGAPLTDLEETHGGQRW 4500
MHFKYAVEHTALLAE IRPQRRAQ VTPTATPTPA+VGT XXXXXXXXXXXXXXXXXXXXXXXXX PAPETP T XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX APV PVAAVV XXXXXXXXXX QAPVAAPT XXXXXXXXXXXXXXXXXXXXXXXXXXXX ESPAPTALIGTDEPTLAPRVTETXXXXXXXXXXXXXXXXXXXXXXXXXX D PSSSPST XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GAAVTTPA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EATLSPNTEEVCTEACVV+NLTLS+ SATYYDARCEGKDD+DLSGCNLSSANSDWNNCRNCIINLESFE ENG EAGTA TTPTPTMVGETTL+LRTEANDPDLLMMSFNSEDCTAFGIAVIPG TPKVME+SRYTDADGLCNSNFDILVGTECDLESYSW YSS+SF+YMYTCSTTTSAGRRRLADGGSE YPIESDAVLCNNG+HFVSLSSL GETGLVYATPDAENYDSVTDSQT+LSGSDMCGES+DANVVTTMLLEEIEE+ GLSGLLGEADESSSEG GL YEIIIGIVCAVVLLM CACFCCYRHRKGKESRAVHMRRNLGYTPDMEAKGEGNFGPTNKHVAITRGGGPQVTPEMLATTSYSQPSHPPTHQRAPSEAPSSIIEDNIANNYRPKTAAKSWKKRKEHKDLTKPVPQQHVIGGSPNSEELKAENS EGS ANSNTRSQASARSEQLSEHSLSQLQMANQTAAAQPNYGYTFEHV+EEG XXXXXXXARSAATGMSGPSKYAPS S+HQ GVTHDLMSQYEPSVYEADXXXXXXXXXXXXXX XXXXXX H+SGRASVADTAAMSHLGSVMEMDDGGSAYAPSESYVSSYVSSEDDDGRPARSIHPRGGPNDAQAMGGVPTDGG YSRHNAHRSGRQ XXXXXXXXXXXXX FEGGSRSYDDEDDESAVGRTAVSMDDLEYYSEDQ+AGGMTSGRGAPLTDLEETHGGQRW
Sbjct: 1 MHFKYAVEHTALLAEAIRPQRRAQLVTPTATPTPAAVGTTXXXXXXXXXXXXXXXXXXXXXXXXX--------------PAPETPATEAPEPEPTEPPTAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT-------AAPVXXXXXXXXXXXXXXXPVAAVVXXXXXXXXXXXXXXXXQAPVAAPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESPAPTALIGTDEPTLAPRVTETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------DFPSSSPSTPPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--XGAAVTTPAPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEATLSPNTEEVCTEACVVDNLTLSTHSATYYDARCEGKDDSDLSGCNLSSANSDWNNCRNCIINLESFEAENG----------------------------EAGTAVTTPTPTMVGETTLDLRTEANDPDLLMMSFNSEDCTAFGIAVIPGATPKVMEISRYTDADGLCNSNFDILVGTECDLESYSWAYSSNSFDYMYTCSTTTSAGRRRLADGGSETYPIESDAVLCNNGDHFVSLSSLADGETGLVYATPDAENYDSVTDSQTSLSGSDMCGESTDANVVTTMLLEEIEEDDGLSGLLGEADESSSEGGGLRYEIIIGIVCAVVLLMGCACFCCYRHRKGKESRAVHMRRNLGYTPDMEAKGEGNFGPTNKHVAITRGGGPQVTPEMLATTSYSQPSHPPTHQRAPSEAPSSIIEDNIANNYRPKTAAKSWKKRKEHKDLTKPVPQQHVIGGSPNSEELKAENSHEGSRANSNTRSQASARSEQLSEHSLSQLQMANQTAAAQPNYGYTFEHVEEEGXXXXXXXXARSAATGMSGPSKYAPSXXXXSNHQDGVTHDLMSQYEPSVYEADXXXXXXXXXXXXXXGDESSSYSYNDGAGSRRGGYAGXXXXXXRGGRHMSGRASVADTAAMSHLGSVMEMDDGGSAYAPSESYVSSYVSSEDDDGRPARSIHPRGGPNDAQAMGGVPTDGGXXXXXXXXXXXXYSRHNAHRSGRQPVASGRSGFGAXXXXXXXXXXXXXSGFEGGSRSYDDEDDESAVGRTAVSMDDLEYYSEDQNAGGMTSGRGAPLTDLEETHGGQRW 1150
BLAST of mRNA_Ecto-sp13_S_contig163.4568.1 vs. uniprot
Match: D8LQ65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ65_ECTSI) HSP 1 Score: 258 bits (659), Expect = 1.110e-75 Identity = 136/149 (91.28%), Postives = 141/149 (94.63%), Query Frame = 1
Query: 424 MADVKRPTRRRGKMGGAARAIALGLSIGGWASSQGLTAAASDLPAAAAA--GSQECRFIVTMWGESSACEQQLDGAAVGCDKKSFSRRADRVQALVGSTPKEAGLGPVREAGSSVWRQVLDFGCVDGRDKLVVSLYDNLTRPLATCEVG 864
MADV+RPTRRRGKMGGAARA+ALGL+IGGWASSQGL AAAS LPAAAAA GSQEC FIVTMWGES+ACEQQLDGAAVGCDKKSFSRRADRVQALVGS PKEAGLGPVREAGSS WRQVL+FGCVDGRDKLVVSLYDNL RPLATCEVG
Sbjct: 1 MADVERPTRRRGKMGGAARALALGLTIGGWASSQGLAAAASHLPAAAAAAAGSQECGFIVTMWGESAACEQQLDGAAVGCDKKSFSRRADRVQALVGSVPKEAGLGPVREAGSSEWRQVLNFGCVDGRDKLVVSLYDNLMRPLATCEVG 149 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig163.4568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig163.4568.1 >prot_Ecto-sp13_S_contig163.4568.1 ID=prot_Ecto-sp13_S_contig163.4568.1|Name=mRNA_Ecto-sp13_S_contig163.4568.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1360bp MADVKRPTRRRGKMGGAARAIALGLSIGGWASSQGLTAAASDLPAAAAAGback to top mRNA from alignment at Ecto-sp13_S_contig163:15898..33378- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig163.4568.1 ID=mRNA_Ecto-sp13_S_contig163.4568.1|Name=mRNA_Ecto-sp13_S_contig163.4568.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=17481bp|location=Sequence derived from alignment at Ecto-sp13_S_contig163:15898..33378- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig163:15898..33378- >mRNA_Ecto-sp13_S_contig163.4568.1 ID=mRNA_Ecto-sp13_S_contig163.4568.1|Name=mRNA_Ecto-sp13_S_contig163.4568.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=4080bp|location=Sequence derived from alignment at Ecto-sp13_S_contig163:15898..33378- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |