mRNA_Ecto-sp13_S_contig163.4566.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig163.4566.1
Unique NamemRNA_Ecto-sp13_S_contig163.4566.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig163.4566.1 vs. uniprot
Match: A0A6H5L0S8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0S8_9PHAE)

HSP 1 Score: 297 bits (760), Expect = 1.640e-89
Identity = 178/229 (77.73%), Postives = 182/229 (79.48%), Query Frame = 1 
Query:    1 SSLSPGLSPSPSARPTDSELGVGGRSSAVAATGEEEGGTAVVAGGTITHEHDRKGLLPSPRRRLSTQSDDQAEEPTGVVRGDSTPRKTRTHDRSARGTDHETGTQVTFQASGTGAEAGGADAATIRALRAELSTLREHVLRSEQKREAQLRELGTRLAVQERRSGPERSGSATSTALREQGEREGAAAIGTTALVVGEAVDTGRDKGGCRDTPRGAVVQNPFAGTGGGA 687
            SS SPGLSPSPSARPTDSELGVGGRSSA A  GE                             LSTQSDDQAEEP GV RG ST R+TR HDRSARGTD ETGTQVTFQASGTGAEAGG DAATIRALRAELSTLREHVLRSEQKREAQLRELGTRLAVQERRSGPERSGS TST LRE+GEREG  AIGT ALVVGEAV+T RDKGGCRDTP GAVV+NPFAGTGGGA
Sbjct:  219 SSPSPGLSPSPSARPTDSELGVGGRSSAAAPIGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSTQSDDQAEEPIGVARGGSTLRRTRAHDRSARGTDDETGTQVTFQASGTGAEAGGGDAATIRALRAELSTLREHVLRSEQKREAQLRELGTRLAVQERRSGPERSGSTTSTTLREEGEREGVTAIGTAALVVGEAVETARDKGGCRDTPTGAVVRNPFAGTGGGA 447
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BLAST of mRNA_Ecto-sp13_S_contig163.4566.1 vs. uniprot
Match: D8LQ68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ68_ECTSI)

HSP 1 Score: 272 bits (696), Expect = 1.140e-80
Identity = 169/230 (73.48%), Postives = 174/230 (75.65%), Query Frame = 1 
Query:    1 SSLSPGLSPSPSARPTDSELG-VGGRSSAVAATGEEEGGTAVVAGGTITHEHDRKGLLPSPRRRLSTQSDDQAEEPTGVVRGDSTPRKTRTHDRSARGTDHETGTQVTFQASGTGAEAGGADAATIRALRAELSTLREHVLRSEQKREAQLRELGTRLAVQERRSGPERSGSATSTALREQGEREGAAAIGTTALVVGEAVDTGRDKGGCRDTPRGAVVQNPFAGTGGGA 687
            SS SPGLSPSPSARPTDSELG                                           LSTQSDDQAEEP GV RGDSTPR++R HDRSA GTD E G QVTFQAS TGAEAGG DAATIRALRAELSTLREHVLRSEQKREAQLRELGTRLAVQERRSGPERSGSATSTALRE+GERE  AAIGT ALVVGEAV+TGRDKGGCRDTPRGAVV+NPFAGTGGGA
Sbjct:  243 SSPSPGLSPSPSARPTDSELGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSTQSDDQAEEPIGVARGDSTPRRSRAHDRSAHGTDDEAGAQVTFQASETGAEAGGEDAATIRALRAELSTLREHVLRSEQKREAQLRELGTRLAVQERRSGPERSGSATSTALREEGEREAVAAIGTAALVVGEAVETGRDKGGCRDTPRGAVVRNPFAGTGGGA 472
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig163.4566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0S8_9PHAE1.640e-8977.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ68_ECTSI1.140e-8073.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig163contigEcto-sp13_S_contig163:798..1486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size690
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_005950.1
Cds size687
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462858.4221036-CDS-Ecto-sp13_S_contig163:797..14841681462858.4221036-CDS-Ecto-sp13_S_contig163:797..1484Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig163 798..1484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig163.4566.1prot_Ecto-sp13_S_contig163.4566.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig163 798..1484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig163.4566.1

>prot_Ecto-sp13_S_contig163.4566.1 ID=prot_Ecto-sp13_S_contig163.4566.1|Name=mRNA_Ecto-sp13_S_contig163.4566.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=229bp
SSLSPGLSPSPSARPTDSELGVGGRSSAVAATGEEEGGTAVVAGGTITHE
HDRKGLLPSPRRRLSTQSDDQAEEPTGVVRGDSTPRKTRTHDRSARGTDH
ETGTQVTFQASGTGAEAGGADAATIRALRAELSTLREHVLRSEQKREAQL
RELGTRLAVQERRSGPERSGSATSTALREQGEREGAAAIGTTALVVGEAV
DTGRDKGGCRDTPRGAVVQNPFAGTGGGA
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mRNA from alignment at Ecto-sp13_S_contig163:798..1486+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig163.4566.1 ID=mRNA_Ecto-sp13_S_contig163.4566.1|Name=mRNA_Ecto-sp13_S_contig163.4566.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=689bp|location=Sequence derived from alignment at Ecto-sp13_S_contig163:798..1486+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTAGTCTATCACCTGGACTCTCACCCTCGCCCTCCGCCAGGCCGACGGA
TTCTGAGCTGGGCGTCGGGGGAAGGAGCTCTGCGGTGGCGGCAACTGGTG
AAGAAGAAGGGGGTACCGCTGTAGTAGCTGGGGGCACCATCACCCACGAA
CACGATCGAAAAGGTTTGTTGCCATCTCCACGGCGGAGGCTAAGCACGCA
ATCCGACGACCAAGCCGAAGAACCCACTGGCGTGGTGCGAGGCGATTCGA
CGCCGCGGAAAACACGTACCCATGACCGATCCGCCCGTGGCACCGACCAC
GAAACAGGGACGCAAGTTACTTTTCAGGCAAGCGGAACGGGGGCAGAGGC
GGGGGGAGCAGATGCGGCCACGATCCGCGCGCTTCGGGCCGAGCTGAGCA
CCTTGAGGGAGCACGTACTGCGATCAGAGCAGAAGAGAGAGGCCCAGCTG
CGCGAGCTCGGAACGAGGCTAGCGGTGCAAGAGAGGCGGAGCGGGCCTGA
GCGCTCGGGTTCCGCCACGAGCACCGCTCTGCGGGAGCAGGGGGAAAGAG
AAGGCGCGGCCGCCATCGGGACGACGGCCCTGGTTGTTGGTGAGGCCGTC
GATACTGGTCGGGATAAGGGCGGTTGCAGAGATACCCCGCGGGGCGCCGT
GGTTCAGAACCCGTTCGCGGGTACGGGGGGAGGTGCGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig163:798..1486+

>mRNA_Ecto-sp13_S_contig163.4566.1 ID=mRNA_Ecto-sp13_S_contig163.4566.1|Name=mRNA_Ecto-sp13_S_contig163.4566.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=687bp|location=Sequence derived from alignment at Ecto-sp13_S_contig163:798..1486+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTAGTCTATCACCTGGACTCTCACCCTCGCCCTCCGCCAGGCCGACGGA
TTCTGAGCTGGGCGTCGGGGGAAGGAGCTCTGCGGTGGCGGCAACTGGTG
AAGAAGAAGGGGGTACCGCTGTAGTAGCTGGGGGCACCATCACCCACGAA
CACGATCGAAAAGGTTTGTTGCCATCTCCACGGCGGAGGCTAAGCACGCA
ATCCGACGACCAAGCCGAAGAACCCACTGGCGTGGTGCGAGGCGATTCGA
CGCCGCGGAAAACACGTACCCATGACCGATCCGCCCGTGGCACCGACCAC
GAAACAGGGACGCAAGTTACTTTTCAGGCAAGCGGAACGGGGGCAGAGGC
GGGGGGAGCAGATGCGGCCACGATCCGCGCGCTTCGGGCCGAGCTGAGCA
CCTTGAGGGAGCACGTACTGCGATCAGAGCAGAAGAGAGAGGCCCAGCTG
CGCGAGCTCGGAACGAGGCTAGCGGTGCAAGAGAGGCGGAGCGGGCCTGA
GCGCTCGGGTTCCGCCACGAGCACCGCTCTGCGGGAGCAGGGGGAAAGAG
AAGGCGCGGCCGCCATCGGGACGACGGCCCTGGTTGTTGGTGAGGCCGTC
GATACTGGTCGGGATAAGGGCGGTTGCAGAGATACCCCGCGGGGCGCCGT
GGTTCAGAACCCGTTCGCGGGTACGGGGGGAGGTGCG
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