mRNA_Ecto-sp13_S_contig163.4567.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig163.4567.1
Unique NamemRNA_Ecto-sp13_S_contig163.4567.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig163.4567.1 vs. uniprot
Match: D8LQ67_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ67_ECTSI)

HSP 1 Score: 324 bits (831), Expect = 1.750e-101
Identity = 157/169 (92.90%), Postives = 162/169 (95.86%), Query Frame = -1 
Query:    5 LCSVETHHAASMDGVTETGSSSAWGARGTPAVMLGECWARRTLRRACYGLEEMLVKAVRLLANISIHRDVGQRVCRHPGLVALEPLLGKCLELYVLYEDGALPQAGLCDQQGKRCWSQGGDWGSGAGPAEAATIPGEELLLNAVCLITNLSYYGPTAANCTAASPARRA 511
            LCSVETHHAAS+DG+TETG SSAWGARG PAV+LGECWARRTLRRACYGLEEMLVKAVRLLANISIHRDVGQRVCRHPGLVALEPLLGKCLELYVL EDGALPQAGLCDQ+GKRCWSQGGDWGSGAGP EAATIPGEELLLNAVCLITNLSYYGP AANCT +SP RRA
Sbjct:  635 LCSVETHHAASVDGITETGRSSAWGARGAPAVVLGECWARRTLRRACYGLEEMLVKAVRLLANISIHRDVGQRVCRHPGLVALEPLLGKCLELYVLSEDGALPQAGLCDQRGKRCWSQGGDWGSGAGPTEAATIPGEELLLNAVCLITNLSYYGPAAANCTPSSPVRRA 803
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BLAST of mRNA_Ecto-sp13_S_contig163.4567.1 vs. uniprot
Match: A0A6H5L021_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L021_9PHAE)

HSP 1 Score: 322 bits (826), Expect = 6.150e-101
Identity = 156/170 (91.76%), Postives = 163/170 (95.88%), Query Frame = -1 
Query:    2 LCSVETHHAASMDGVTETGSSSAWGARGTPAVMLGECWARRTLRRACYGLEEMLVKAVRLLANISIHRDVGQRVCRHPGLVALEPLLGKCLELYVLYEDGALPQAGLCDQQGKRCWSQGGDWGSGAGPAEAATIPGEELLLNAVCLITNLSYYGPTAANCTAASPARRAP 511
            LCSV+THHAAS+DG+TETGS +AWGARGTP V+LGECWARRTLRRACYGLEEMLVKAVRLLANISIHRDVGQ+VCRHPGLVALEPLLGKCLELYVLY+DGALPQAGL DQQGKRCWSQGGDWGSGAGP EAATIPGEELLLNAVCLITNLSYYGPTAANCTAASP  R P
Sbjct:  605 LCSVKTHHAASVDGITETGSITAWGARGTPTVVLGECWARRTLRRACYGLEEMLVKAVRLLANISIHRDVGQQVCRHPGLVALEPLLGKCLELYVLYQDGALPQAGLRDQQGKRCWSQGGDWGSGAGPVEAATIPGEELLLNAVCLITNLSYYGPTAANCTAASPGGRTP 774
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig163.4567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQ67_ECTSI1.750e-10192.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L021_9PHAE6.150e-10191.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig163contigEcto-sp13_S_contig163:7958..8468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size512
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462858.3202634-CDS-Ecto-sp13_S_contig163:7957..82781681462858.3202634-CDS-Ecto-sp13_S_contig163:7957..8278Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig163 7958..8278 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462858.329647-UTR-Ecto-sp13_S_contig163:8278..84681681462858.329647-UTR-Ecto-sp13_S_contig163:8278..8468Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig163 8279..8468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig163.4567.1prot_Ecto-sp13_S_contig163.4567.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig163 7958..8278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig163.4567.1

>prot_Ecto-sp13_S_contig163.4567.1 ID=prot_Ecto-sp13_S_contig163.4567.1|Name=mRNA_Ecto-sp13_S_contig163.4567.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
GVRGELVTLRCSLPLWVHSRKGLLSGRRHSVAAPRREWSRLLPVPHRCPN
RHLDSNIVCPAGHKDPPAVEPHLHTTRTVPGTFPVAVPRQPAPGGDKPAA
LRPGEC*
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mRNA from alignment at Ecto-sp13_S_contig163:7958..8468+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig163.4567.1 ID=mRNA_Ecto-sp13_S_contig163.4567.1|Name=mRNA_Ecto-sp13_S_contig163.4567.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=511bp|location=Sequence derived from alignment at Ecto-sp13_S_contig163:7958..8468+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGTGCGCGGCGAGCTGGTGACGCTGCGGTGCAGTTTGCCGCTGTGGGT
CCATAGTAGGAAAGGTTTGTTATCAGGCAGACGGCATTCAGTAGCAGCTC
CTCGCCGGGAATGGTCGCGGCTTCTGCCGGTCCCGCACCGCTGCCCCAAT
CGCCACCTTGACTCCAACATCGTTTGCCCTGCTGGTCACAAAGACCCGCC
TGCGGTAGAGCCCCATCTTCATACAACACGTACAGTTCCAGGCACTTTCC
CAGTAGCGGTTCCAAGGCAACCAGCCCCGGGTGGCGACAAACCCGCTGCC
CTACGTCCCGGTGAATGCTGATGTTCGCCAGGAGACGCACCGCCTTCACC
AGCATTTCCTCTAGACCGTAACACGCCCGTCTCAACGTCCTCCTTGCCCA
GCACTCCCCGAGCATGACGGCGGGAGTTCCTCTTGCCCCCCAGGCACTAC
TACTACCGGTTTCGGTTACTCCATCCATAGACGCAGCATGATGGGTTTCA
ACAGAGCACAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig163:7958..8468+

>mRNA_Ecto-sp13_S_contig163.4567.1 ID=mRNA_Ecto-sp13_S_contig163.4567.1|Name=mRNA_Ecto-sp13_S_contig163.4567.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig163:7958..8468+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGTGCGCGGCGAGCTGGTGACGCTGCGGTGCAGTTTGCCGCTGTGGGT
CCATAGTAGGAAAGGTTTGTTATCAGGCAGACGGCATTCAGTAGCAGCTC
CTCGCCGGGAATGGTCGCGGCTTCTGCCGGTCCCGCACCGCTGCCCCAAT
CGCCACCTTGACTCCAACATCGTTTGCCCTGCTGGTCACAAAGACCCGCC
TGCGGTAGAGCCCCATCTTCATACAACACGTACAGTTCCAGGCACTTTCC
CAGTAGCGGTTCCAAGGCAACCAGCCCCGGGTGGCGACAAACCCGCTGCC
CTACGTCCCGGTGAATGCTGA
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