mRNA_Ecto-sp13_S_contig163.4565.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig163.4565.1
Unique NamemRNA_Ecto-sp13_S_contig163.4565.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig163.4565.1 vs. uniprot
Match: A0A6H5L0S8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0S8_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 3.880e-30
Identity = 73/92 (79.35%), Postives = 74/92 (80.43%), Query Frame = 1 
Query:   19 LRTSTLSFAEDDVAXXXXXXXXXRKLGGGDGDQLALEAGRESEAWDSEEDDGQGVASPGRAPNSSHGGALLGGAGGTGRSSAIGGSRGAREE 294
            LR S LSFAEDDVA         R LGGGDGDQLAL+AG ESEAWDSEEDDGQGVASPGRAPNSSHGGAL G  GGTGR SAIGGSR AREE
Sbjct:   57 LRASALSFAEDDVAAAAG-----RNLGGGDGDQLALDAGGESEAWDSEEDDGQGVASPGRAPNSSHGGALAGVTGGTGRFSAIGGSRVAREE 143
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BLAST of mRNA_Ecto-sp13_S_contig163.4565.1 vs. uniprot
Match: D8LQ68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ68_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.410e-22
Identity = 57/75 (76.00%), Postives = 58/75 (77.33%), Query Frame = 1 
Query:   13 APLRTSTLSFAEDDVAXXXXXXXXXRKLGGGDGDQLALEAGRESEAWDSEEDDGQGVASPGRAPNSSHGGALLGG 237
            APLR S LSFAEDDVA          KLG GDGDQLALE G ESEAWDSEEDDGQGV SPG APNSSHGGAL+GG
Sbjct:   79 APLRASALSFAEDDVAAAAGG-----KLGSGDGDQLALETGGESEAWDSEEDDGQGVVSPGTAPNSSHGGALVGG 148
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig163.4565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L0S8_9PHAE3.880e-3079.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ68_ECTSI1.410e-2276.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig163contigEcto-sp13_S_contig163:264..577 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size301
Hectar predicted targeting categoryother localisation
Exons2
Cds size297
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462858.281775-CDS-Ecto-sp13_S_contig163:263..3191681462858.281775-CDS-Ecto-sp13_S_contig163:263..319Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig163 264..319 +
1681462858.292446-CDS-Ecto-sp13_S_contig163:334..5751681462858.292446-CDS-Ecto-sp13_S_contig163:334..575Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig163 335..575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig163.4565.1prot_Ecto-sp13_S_contig163.4565.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig163 264..575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig163.4565.1

>prot_Ecto-sp13_S_contig163.4565.1 ID=prot_Ecto-sp13_S_contig163.4565.1|Name=mRNA_Ecto-sp13_S_contig163.4565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=99bp
TAATAPLRTSTLSFAEDDVAAAAAAAAAGRKLGGGDGDQLALEAGRESEA
WDSEEDDGQGVASPGRAPNSSHGGALLGGAGGTGRSSAIGGSRGAREEL
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mRNA from alignment at Ecto-sp13_S_contig163:264..577+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig163.4565.1 ID=mRNA_Ecto-sp13_S_contig163.4565.1|Name=mRNA_Ecto-sp13_S_contig163.4565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=314bp|location=Sequence derived from alignment at Ecto-sp13_S_contig163:264..577+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCGCCGCCACCGCCCCCCTGCGGACATCGACATTGTCCTTCGCCGAAGA
CGACGTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCTGCCG
GACGAAAACTAGGAGGCGGGGACGGCGATCAGCTTGCACTCGAAGCCGGC
AGGGAGAGTGAGGCTTGGGACAGCGAAGAAGATGACGGGCAAGGGGTTGC
CTCGCCGGGAAGGGCACCAAACAGCAGCCATGGTGGTGCTCTCCTTGGCG
GCGCCGGCGGTACGGGAAGATCGAGTGCCATCGGCGGTAGTAGGGGCGCA
CGCGAAGAGTTGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig163:264..577+

>mRNA_Ecto-sp13_S_contig163.4565.1 ID=mRNA_Ecto-sp13_S_contig163.4565.1|Name=mRNA_Ecto-sp13_S_contig163.4565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=297bp|location=Sequence derived from alignment at Ecto-sp13_S_contig163:264..577+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCGCCGCCACCGCCCCCCTGCGGACATCGACATTGTCCTTCGCCGAAGA
CGACGTCGCCGCCGCCGCCGCCGCCGCCGCTGCCGGACGAAAACTAGGAG
GCGGGGACGGCGATCAGCTTGCACTCGAAGCCGGCAGGGAGAGTGAGGCT
TGGGACAGCGAAGAAGATGACGGGCAAGGGGTTGCCTCGCCGGGAAGGGC
ACCAAACAGCAGCCATGGTGGTGCTCTCCTTGGCGGCGCCGGCGGTACGG
GAAGATCGAGTGCCATCGGCGGTAGTAGGGGCGCACGCGAAGAGTTG
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