mRNA_Ecto-sp13_S_contig16298.4563.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16298.4563.1
Unique NamemRNA_Ecto-sp13_S_contig16298.4563.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16298.4563.1 vs. uniprot
Match: D7G6V7_ECTSI (Protein kish n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6V7_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 4.100e-42
Identity = 73/74 (98.65%), Postives = 74/74 (100.00%), Query Frame = 2 
Query:   41 MSALFSMPDLLTVILLLICICTYVRGYRKGIFDVEDGSHSGLRGLCWKAARVGERLSPYVSAALLVMAGRVLMD 262
            MSALFSMPDLLTVILLLIC+CTYVRGYRKGIFDVEDGSHSGLRGLCWKAARVGERLSPYVSAALLVMAGRVLMD
Sbjct:    1 MSALFSMPDLLTVILLLICVCTYVRGYRKGIFDVEDGSHSGLRGLCWKAARVGERLSPYVSAALLVMAGRVLMD 74
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BLAST of mRNA_Ecto-sp13_S_contig16298.4563.1 vs. uniprot
Match: A0A835YW34_9STRA (Protein kish n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW34_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.360e-20
Identity = 43/74 (58.11%), Postives = 56/74 (75.68%), Query Frame = 2 
Query:   41 MSALFSMPDLLTVILLLICICTYVRGYRKGIFD--VEDGSHSGLRGLCWKAARVGERLSPYVSAALLVMAGRVL 256
            MSA+F    L+TV+LLLIC CTY+RG+R GIFD   E   H+G +GLCWK +R+GER+SPYVS + L+MA  +L
Sbjct:    1 MSAIFDFSSLITVLLLLICTCTYLRGFRSGIFDNSAEPHRHTGFKGLCWKFSRIGERISPYVSVSCLLMAVHIL 74
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BLAST of mRNA_Ecto-sp13_S_contig16298.4563.1 vs. uniprot
Match: F0WK68_9STRA (Protein kish n=2 Tax=Albugo TaxID=65356 RepID=F0WK68_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.020e-18
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 2 
Query:   41 MSALFSMPDLLTVILLLICICTYVRGYRKGIFD--VEDGSHSGLRGLCWKAARVGERLSPYVSAALLVMA 244
            MSALFS+P L+TVILL IC C+Y+R     +FD   + G H GL GLCWKA+R+GER SPYV+ AL++MA
Sbjct:    1 MSALFSLPGLITVILLFICTCSYIRAKFPTVFDRNQQPGKHEGLSGLCWKASRIGERKSPYVAGALILMA 70
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BLAST of mRNA_Ecto-sp13_S_contig16298.4563.1 vs. uniprot
Match: K3X7N3_GLOUD (Protein kish n=4 Tax=Pythiaceae TaxID=4782 RepID=K3X7N3_GLOUD)

HSP 1 Score: 86.7 bits (213), Expect = 5.360e-18
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 2 
Query:   41 MSALFSMPDLLTVILLLICICTYVRGYRKGIFD--VEDGSHSGLRGLCWKAARVGERLSPYVSAALLVMAGRVLM 259
            MSALFS+  L+TVILL IC CTY+R     IFD   + G H GL GLCWKA+R+GER SPYV+  L+VMA   L+
Sbjct:    1 MSALFSLQGLITVILLFICTCTYIRMKFPTIFDRGQQPGKHEGLSGLCWKASRIGERKSPYVAGVLVVMAFHTLL 75
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BLAST of mRNA_Ecto-sp13_S_contig16298.4563.1 vs. uniprot
Match: D0NVB3_PHYIT (Protein kish n=18 Tax=Peronosporaceae TaxID=4777 RepID=D0NVB3_PHYIT)

HSP 1 Score: 81.6 bits (200), Expect = 3.990e-16
Identity = 43/74 (58.11%), Postives = 52/74 (70.27%), Query Frame = 2 
Query:   41 MSALFSMPDLLTVILLLICICTYVRGYRKGIFDVED--GSHSGLRGLCWKAARVGERLSPYVSAALLVMAGRVL 256
            MSALFS+  LLTVILL IC CTY++     +FD     G H GL GLCWKA+R+GER S YV++AL+VMA   L
Sbjct:    1 MSALFSLQGLLTVILLFICTCTYIKMKFPTLFDRGQLPGKHEGLGGLCWKASRIGERKSQYVASALVVMAVHTL 74
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BLAST of mRNA_Ecto-sp13_S_contig16298.4563.1 vs. uniprot
Match: F0Y3L9_AURAN (Protein kish n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3L9_AURAN)

HSP 1 Score: 80.5 bits (197), Expect = 1.370e-15
Identity = 40/85 (47.06%), Postives = 52/85 (61.18%), Query Frame = 2 
Query:   41 MSALFSMPDLLTVILLLICICTYVRGYRKGIFD------------VEDGSHSGLRGLCWKAARVGERLSPYVSAALLVMAGRVLM 259
            MSA+F    L+TV+LL+IC CTYVR  R  +FD            +     SG+RG CWKA+R+GERLSPYVS  +  MA  +L+
Sbjct:    1 MSAIFDFSSLVTVLLLIICTCTYVRAMRPSVFDGGLSADDLASPHLSYKRRSGIRGACWKASRIGERLSPYVSVVVAAMAFHILL 85
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BLAST of mRNA_Ecto-sp13_S_contig16298.4563.1 vs. uniprot
Match: H3G7D7_PHYRM (Protein kish n=3 Tax=Peronosporaceae TaxID=4777 RepID=H3G7D7_PHYRM)

HSP 1 Score: 79.3 bits (194), Expect = 2.810e-15
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 2 
Query:   44 SALFSMPDLLTVILLLICICTYVRGYRKGIFDVED--GSHSGLRGLCWKAARVGERLSPYVSAALLVMAGRVL 256
            SALFS+  LLTVILL IC CTY++     +FD     G H GL GLCWKA+R+GER S YV+ AL+VMA   L
Sbjct:    1 SALFSLQGLLTVILLFICTCTYIKMKFPTLFDRGQLPGKHEGLGGLCWKASRIGERKSQYVAGALVVMAMHTL 73
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BLAST of mRNA_Ecto-sp13_S_contig16298.4563.1 vs. uniprot
Match: A0A8J5IYH4_9STRA (Protein kish n=2 Tax=Phytophthora TaxID=4783 RepID=A0A8J5IYH4_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 4.810e-15
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = 2 
Query:   44 SALFSMPDLLTVILLLICICTYVRGYRKGIFDVED--GSHSGLRGLCWKAARVGERLSPYVSAALLVMAGRVL 256
            SALFS+  LLTVILL IC CTY++     +FD     G H GL GLCWKA+R+GER S YV+ AL+VMA   L
Sbjct:   21 SALFSLQGLLTVILLFICTCTYIKMKFPTLFDRGQLPGKHEGLGGLCWKASRIGERKSQYVAGALVVMAVHTL 93
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BLAST of mRNA_Ecto-sp13_S_contig16298.4563.1 vs. uniprot
Match: A0A550C1V1_9AGAR (Protein kish n=1 Tax=Auriculariopsis ampla TaxID=97359 RepID=A0A550C1V1_9AGAR)

HSP 1 Score: 77.4 bits (189), Expect = 1.270e-14
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 2 
Query:   41 MSALFSMPDLLTVILLLICICTYVRGYRKGIFDVEDGSHSGLRGLCWKAARVGERLSPYVSAALLVMAGRVLMD 262
            MSALF+  DLL VILL+IC CTYVRG    I D       G  GL W +AR+GERLSPYV+ A + MA ++LM+
Sbjct:    1 MSALFNFQDLLLVILLVICTCTYVRGIMPRIIDRNK---EGFLGLFWMSARIGERLSPYVAIACVAMAVKILME 71
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BLAST of mRNA_Ecto-sp13_S_contig16298.4563.1 vs. uniprot
Match: A0A8H3TSN4_9TREE (Protein kish n=1 Tax=Naganishia liquefaciens TaxID=104408 RepID=A0A8H3TSN4_9TREE)

HSP 1 Score: 76.6 bits (187), Expect = 2.460e-14
Identity = 42/73 (57.53%), Postives = 47/73 (64.38%), Query Frame = 2 
Query:   41 MSALFSMPDLLTVILLLICICTYVRGYRKGIFDVEDGSHSGLRGLCWKAARVGERLSPYVSAALLVMAGRVLM 259
            MSALF+   LL V+LLLIC CTYVRG    I D       G  GL WK AR+GERLSPYVS A + MA  +LM
Sbjct:    1 MSALFNFQSLLLVLLLLICTCTYVRGTMPSIVDRNK---EGFLGLFWKCARIGERLSPYVSLACVAMAVSILM 70
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16298.4563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6V7_ECTSI4.100e-4298.65Protein kish n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A835YW34_9STRA1.360e-2058.11Protein kish n=1 Tax=Tribonema minus TaxID=303371 ... [more]
F0WK68_9STRA1.020e-1860.00Protein kish n=2 Tax=Albugo TaxID=65356 RepID=F0WK... [more]
K3X7N3_GLOUD5.360e-1858.67Protein kish n=4 Tax=Pythiaceae TaxID=4782 RepID=K... [more]
D0NVB3_PHYIT3.990e-1658.11Protein kish n=18 Tax=Peronosporaceae TaxID=4777 R... [more]
F0Y3L9_AURAN1.370e-1547.06Protein kish n=1 Tax=Aureococcus anophagefferens T... [more]
H3G7D7_PHYRM2.810e-1557.53Protein kish n=3 Tax=Peronosporaceae TaxID=4777 Re... [more]
A0A8J5IYH4_9STRA4.810e-1557.53Protein kish n=2 Tax=Phytophthora TaxID=4783 RepID... [more]
A0A550C1V1_9AGAR1.270e-1455.41Protein kish n=1 Tax=Auriculariopsis ampla TaxID=9... [more]
A0A8H3TSN4_9TREE2.460e-1457.53Protein kish n=1 Tax=Naganishia liquefaciens TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16298contigEcto-sp13_S_contig16298:318..3163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score150.2
Seed ortholog evalue3.9e-34
Seed eggNOG ortholog2880.D7G6V7
Model size942
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.Protein of unknown function (DUF1242)
EggNOG OGs2E2NW@1,2S9VV@2759
Ec32 ortholog descriptionProtein of unknown function DUF1242
Ec32 orthologEc-01_012070.1
Cds size228
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462858.206501-UTR-Ecto-sp13_S_contig16298:317..9911681462858.206501-UTR-Ecto-sp13_S_contig16298:317..991Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16298 318..991 -
1681462858.2466333-UTR-Ecto-sp13_S_contig16298:3123..31631681462858.2466333-UTR-Ecto-sp13_S_contig16298:3123..3163Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16298 3124..3163 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462858.2177496-CDS-Ecto-sp13_S_contig16298:991..10891681462858.2177496-CDS-Ecto-sp13_S_contig16298:991..1089Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16298 992..1089 -
1681462858.2269137-CDS-Ecto-sp13_S_contig16298:2033..21601681462858.2269137-CDS-Ecto-sp13_S_contig16298:2033..2160Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16298 2034..2160 -
1681462858.2366323-CDS-Ecto-sp13_S_contig16298:3120..31231681462858.2366323-CDS-Ecto-sp13_S_contig16298:3120..3123Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16298 3121..3123 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16298.4563.1prot_Ecto-sp13_S_contig16298.4563.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16298 992..3123 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16298.4563.1

>prot_Ecto-sp13_S_contig16298.4563.1 ID=prot_Ecto-sp13_S_contig16298.4563.1|Name=mRNA_Ecto-sp13_S_contig16298.4563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=76bp
MSALFSMPDLLTVILLLICICTYVRGYRKGIFDVEDGSHSGLRGLCWKAA
RVGERLSPYVSAALLVMAGRVLMDG*
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mRNA from alignment at Ecto-sp13_S_contig16298:318..3163-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16298.4563.1 ID=mRNA_Ecto-sp13_S_contig16298.4563.1|Name=mRNA_Ecto-sp13_S_contig16298.4563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2846bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16298:318..3163- (Ectocarpus species13 EcNAP12_S_4_19m)
AAATTGGGTGTGCTCCCCTGCGCCACTGGGTTGATCAGCCATGGTGAGCC
ATGATGGCCATGATCTTGCGTTGTGCTCGATTTCGCTCCCCCTACTTCTT
AGGACCAACACACGACCCATCTCGCTGCCGTGTTGCGTGTGCTACAGCAG
TGCAACAGCAGTAGTAGAGACAGGTGGTTCTGTGGACCGACGGTGCAGCC
ACACCTCCCTCTCATGTTTCCGATGACCACCTGATCATTTCCATCGCAGT
GCTGGCCGACCCAAGTCGTGCTGAAGGCCTGGCAATGTATTATGTGGCCT
GCCATGCATACAGGTAGTCAGGTAGTGTTCGTCCGCAATCAACTCGGCAA
TTACGCCGCATTGTCTTCTACAAGAACAAGGCGGTTAGGCCCTTGGCGGT
TGGCATTTCTGCAATCTGATTGGGAGTTGGCATGTTGCACACAAATTTGA
TCGCCCCGGCCAAAAGGGGCAGATTCTGGGTCCTGATATATATGCAGGGT
GAACGCTTTGCACTCTTGCGGTTGTCTTGTTTCTTCACAGTTACCGTTCC
GATCTTTCTGCCCAAGAAACCAGCAGCTGCTGTATCTACAGTAGCACTCG
ACGCGGTTGATTCCCGTGGTCACGCAAGGTCACAGGCCAACTTTACTCAA
GAGCGATTTATTCATGAGTCAGTAGTACGTGAGTACTCAAAACGCAACCA
ATACAGAATGAGGGACCGTAACACATAAAAGGCGAGCACAGCAGGTGGAG
AGGTGGGACAACAAAAGGAAAGTACACATCGTAAATATCTGTGTTATCTT
CGCCATACTTTGTCGACCCCGACAGATACTGTACGTCAAACACATGCCGA
ACAGTGAAGACTTAGCACCACAATAGATGGGACCAAAAAACATCAAGACA
CAGACACTCCAACATGTTCCTTTGCAAATGACAATCCTGATCTTTGCCCC
CGACTGATCACACGTGTGCTTCCGCCTCCCCCTCCCTCCCCCCCTTGGTG
CAGTCGGCGCTCTTTAGCATGCCCGACCTCCTGACGGTCATTTTGCTGTT
GATATGCATCTGCACGTACGTCAGGGGGTACCGAAAGGGAATATTTGATG
TCGAGGATGGTTCACACAGTGGCCTGCGAGGTGAGATGCTCTTATACAAC
ACCAGTGACCCCTTCCACGCGCACGATCAGCGTTATGTTGCACCAACAGC
CGATTTTCGCAGGCAGCAAGCGATTTGCTACGCTGCTGCACCAGCTCAGT
GTCGACTTTGCCAGCGCCATGTATACGGGACTTTTATTTCCGTGTTTTGT
CAGGAATAGCAATCCGCTGTAAGCGCTTGCTGCTGGTCGGGGCTGACGCA
GCAGCTGGCGGTAAGAGAGCCTCTTTGCGCTCTGCAAAGAGGTTGTCAAA
TGCTTCATTCTTTCAGCGTGCTCTTACCATCTTGATTCACATGATACACC
ATACTTCATTCGTGCCAGACAAATGCTTGCCCACTGCTCTCGGGAGCGTA
TGACATAGTAGGTGCGTCCACGTGACATGCCACGGCCTGGATCGGCCAAC
CCCTCGCCCTTCCCCATCAATTTTACCATATGGTGTACCGCTGCTATCGC
TATTGTGAGGTTGATCTGATGGGACACACGTACGTGTAGTATTGAACGAG
GCTTCAAGAATCGTGCCGTGAAGTAGGTTCGCGTGGTTACTGGGGCACCG
TCGCCGTGTCGGTTGTCGGTATGAATACAGTACAGCACCCAGCTTACGCG
GTGACATGCCACACGGCACGATGCTGAGGAAATTGCCGTGGCTCGTGCAG
GAGCTTTCCCAGCAGTGTCCAGAAGTAGGTTCAGCATTTAACATGTATCC
CGCAGAGAGGCTAGCATTTCATGCTTTGAAACAACCAACCGTACTACCGT
TCGTTGATGTCTCACGCTTCCATGCAACGGCTCTACAATAGGAGCTACGG
CGAGGGGTGAAGCACAAGACTTGCGGATATATTATTACTGTATTTGCGCG
GAAATGGTTTGCACCGTAGGTTTGACCCTCTTTGGTTGTGCCGGTGGTTC
TCCTCCTTGCATTGGCGACCGCAGGGTTGTGCTGGAAAGCGGCCCGGGTG
GGAGAGCGATTAAGCCCTTATGTCAGCGCGGCGCTGCTGGTCATGGCGGG
ACGTGTCCTCATGGATGGTTGATGCTGCAACTCGACCGCAGCTAAAGAGA
GAGGCTCGCGCGTGGAGCAAGAACATGTGTCGTCCGTTGTGCATGTGTCA
GGCTCTAACAGCGCAATAAAATAGGACCGTTGTAAGTTTGATGTAAAGGT
TTCCAGTGGCGCGACTTGTGCCCGCGAGGCAGTGCGTGTGCAGCAGCAGA
GCAGCTGTAAACGAGGACGAGGGCAAGAGAACAAGGAAGCAAGCTGTGTG
TATGTCAAGTGTCGAGTGGTCTCGAATAACTTGACGGCGGTCGCGTGGCT
GTGCTTTCATCAGTGGGCTCTCCCGAAGAAGTCGGGCAACCAGCTCTTGG
GTGGTCTCTTTCGATGTTGAATGCCGGGGATGAGCCGTTTTTGTGTTGAT
TGCGAGCTAGCTCATCAAAGCGCTCGGGAGTAGAATCATTTATCCTGGAC
TCAAGTTGCCAGACGCTCGTCTATCGGCGGACAGAGAGTTTTTTTGTTGT
AGAAGTAAGAGAGTCCACAGCTTTGTTCATGCTTTTGCGTCCTTCGGGAT
ATATTGCCACAACATTGTTGCCAACTGTCATTATTCCCCGCCTATAGTCG
GTCGAGGTGGAGAAGGTCCCCATACCCCGCTTGACCTTGGGCACAGGGAC
GGCGTTTGGGGTCCAGGTTTAGGCCGAAGGAAGGAAGGAAGGAAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16298:318..3163-

>mRNA_Ecto-sp13_S_contig16298.4563.1 ID=mRNA_Ecto-sp13_S_contig16298.4563.1|Name=mRNA_Ecto-sp13_S_contig16298.4563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16298:318..3163- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGCGCTCTTTAGCATGCCCGACCTCCTGACGGTCATTTTGCTGTT
GATATGCATCTGCACGTACGTCAGGGGGTACCGAAAGGGAATATTTGATG
TCGAGGATGGTTCACACAGTGGCCTGCGAGGGTTGTGCTGGAAAGCGGCC
CGGGTGGGAGAGCGATTAAGCCCTTATGTCAGCGCGGCGCTGCTGGTCAT
GGCGGGACGTGTCCTCATGGATGGTTGA
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