mRNA_Ecto-sp13_S_contig1629.4557.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1629.4557.1
Unique NamemRNA_Ecto-sp13_S_contig1629.4557.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1629.4557.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 1.620e-56
Identity = 97/125 (77.60%), Postives = 110/125 (88.00%), Query Frame = 2
Query:    2 KKRLLALLQGVAREMGASPTDTPHGVPHVLDNLEQVQQHLGIMATTGIYPRLVVLHDVWEREVVDALLPLGLKVLLTTRDRSKISVQGGCLELGDMTEEEALELLLKTSMTVGQPGNDVRTQITK 376
            K  LL+LLQG+AREM A+PTDTPHGVPHVL++LEQV+QHL  +A+ G  PRLVVL DVWEREVVDALL LGLKVL+TTRDRS + V GG LELGDMTEEEALELLLKTS TVGQPG++VRTQ+TK
Sbjct:   79 KNSLLSLLQGLAREMSAAPTDTPHGVPHVLESLEQVKQHLATVASAGTSPRLVVLDDVWEREVVDALLSLGLKVLVTTRDRSVVGVSGGLLELGDMTEEEALELLLKTSRTVGQPGHEVRTQMTK 203          
BLAST of mRNA_Ecto-sp13_S_contig1629.4557.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 2.560e-54
Identity = 97/125 (77.60%), Postives = 109/125 (87.20%), Query Frame = 2
Query:    2 KKRLLALLQGVAREMGASPTDTPHGVPHVLDNLEQVQQHLGIMATTGIYPRLVVLHDVWEREVVDALLPLGLKVLLTTRDRSKISVQGGCLELGDMTEEEALELLLKTSMTVGQPGNDVRTQITK 376
            KKRLL LLQG+  +MGA+PTDTPHGVPHVLD+LEQVQ+HLG +A+TG  PRLVVL DVWEREVVDALLPLG KVL+TTRDRS + V   CLELGDMTEEEALELLLKTS TVG+PG+ VRT +TK
Sbjct:  215 KKRLLPLLQGLTGDMGAAPTDTPHGVPHVLDSLEQVQRHLGAVASTGTSPRLVVLDDVWEREVVDALLPLGFKVLVTTRDRSVVGVPTRCLELGDMTEEEALELLLKTSGTVGRPGDSVRTVMTK 339          
BLAST of mRNA_Ecto-sp13_S_contig1629.4557.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 5.190e-52
Identity = 94/125 (75.20%), Postives = 106/125 (84.80%), Query Frame = 2
Query:    2 KKRLLALLQGVAREMGASPTDTPHGVPHVLDNLEQVQQHLGIMATTGIYPRLVVLHDVWEREVVDALLPLGLKVLLTTRDRSKISVQGGCLELGDMTEEEALELLLKTSMTVGQPGNDVRTQITK 376
            K  LLALLQG+A ++GA+PTD PHGVPHVLD LEQVQQHL  +A+TG  PRLVVL DVWEREVVDA +PLG KVLLTTRDRS + +  G LELGDMTEEEALELL KTS TVGQPG+DVRT++TK
Sbjct:  338 KSSLLALLQGLAWDVGAAPTDAPHGVPHVLDRLEQVQQHLAAVASTGTSPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGLPAGRLELGDMTEEEALELLRKTSGTVGQPGDDVRTKMTK 462          
BLAST of mRNA_Ecto-sp13_S_contig1629.4557.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 4.120e-51
Identity = 92/125 (73.60%), Postives = 105/125 (84.00%), Query Frame = 2
Query:    2 KKRLLALLQGVAREMGASPTDTPHGVPHVLDNLEQVQQHLGIMATTGIYPRLVVLHDVWEREVVDALLPLGLKVLLTTRDRSKISVQGGCLELGDMTEEEALELLLKTSMTVGQPGNDVRTQITK 376
            K  LLALLQG+AREMGA+ TD PH VPHVLD LEQV+QHL  +A+TG +PRLVVL DVWEREVVDA +PLG KVLLTTRDRS + V  G LE+GDMTEEEALELL K+S  VGQPG+DVRT++TK
Sbjct:  284 KSSLLALLQGLAREMGAARTDAPHTVPHVLDGLEQVKQHLAAVASTGTFPRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVVVPAGRLEVGDMTEEEALELLRKSSGAVGQPGDDVRTKMTK 408          
BLAST of mRNA_Ecto-sp13_S_contig1629.4557.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 174 bits (442), Expect = 1.070e-47
Identity = 89/125 (71.20%), Postives = 103/125 (82.40%), Query Frame = 2
Query:    2 KKRLLALLQGVAREMGASPTDTPHGVPHVLDNLEQVQQHLGIMATTGIYPRLVVLHDVWEREVVDALLPLGLKVLLTTRDRSKISVQGGCLELGDMTEEEALELLLKTSMTVGQPGNDVRTQITK 376
            K  LLALLQG+AR++GA+PTD P GVP VLD+LEQV+QHL  + +TG   RLVVL DVWEREVVDA +PLG KVLLTTRDRS + V  G LELGD+TEEEALELL KTS  VGQPG+DVRT++TK
Sbjct:  321 KSSLLALLQGLARDVGAAPTDAPCGVPRVLDSLEQVRQHLAAVTSTGTSQRLVVLDDVWEREVVDAFVPLGFKVLLTTRDRSVVGVPAGRLELGDVTEEEALELLRKTSGAVGQPGDDVRTKMTK 445          
BLAST of mRNA_Ecto-sp13_S_contig1629.4557.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 1.420e-47
Identity = 89/124 (71.77%), Postives = 100/124 (80.65%), Query Frame = 2
Query:    5 KRLLALLQGVAREMGASPTDTPHGVPHVLDNLEQVQQHLGIMATTGIYPRLVVLHDVWEREVVDALLPLGLKVLLTTRDRSKISVQGGCLELGDMTEEEALELLLKTSMTVGQPGNDVRTQITK 376
            K LL  LQG+AREMGA+PTD PHGVPHV D+LEQV QHL  + + G  PRLVVL DVWEREVV A L +GLKVL+TTRDRS + V GG LELGDM E+EALELL KTS TVGQPG+ VRTQ+TK
Sbjct:  316 KSLLHRLQGLAREMGAAPTDAPHGVPHVFDSLEQVMQHLAAVVSRGSSPRLVVLDDVWEREVVAAFLGVGLKVLVTTRDRSIVGVPGGLLELGDMAEDEALELLWKTSGTVGQPGDGVRTQMTK 439          
BLAST of mRNA_Ecto-sp13_S_contig1629.4557.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 4.470e-46
Identity = 90/126 (71.43%), Postives = 102/126 (80.95%), Query Frame = 2
Query:    2 KKRLLALLQGVAREMGASPTDTPHGVPHVLDNLEQVQQHLG-IMATTGIYPRLVVLHDVWEREVVDALLPLGLKVLLTTRDRSKISVQGGCLELGDMTEEEALELLLKTSMTVGQPGNDVRTQITK 376
            K  LL LLQG+AREMG +PTD PH VP VLD+LEQVQQHL  ++A+TG  PRLVVL DVWEREVVDAL+PLG KVLLTTRD S + V    L+LGDMTEEEALELL KTS TVGQPG+ VR ++TK
Sbjct:  295 KNSLLPLLQGLAREMGVAPTDAPHAVPQVLDSLEQVQQHLAAVVASTGTSPRLVVLDDVWEREVVDALVPLGFKVLLTTRDWSVVVVPARRLDLGDMTEEEALELLRKTSGTVGQPGDYVRMKMTK 420          
BLAST of mRNA_Ecto-sp13_S_contig1629.4557.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 5.960e-46
Identity = 89/125 (71.20%), Postives = 101/125 (80.80%), Query Frame = 2
Query:    2 KKRLLALLQGVAREMGASPTDTPHGVPHVLDNLEQVQQHLGIMATTGIYPRLVVLHDVWEREVVDALLPLGLKVLLTTRDRSKISVQGGCLELGDMTEEEALELLLKTSMTVGQPGNDVRTQITK 376
            K  LL LLQG+ARE+GA+PTD PHGVPH LD+LEQVQQHL  +A+T   PRLVVL DVWEREVVDA +PLG K+LLTTRDRS +    G LELGDMTEEEALELL KTS TV  PG+DVR ++TK
Sbjct:  123 KNSLLPLLQGLAREVGAAPTDAPHGVPHALDSLEQVQQHLAAVASTRNSPRLVVLDDVWEREVVDAFVPLGFKLLLTTRDRSIVCDPAGRLELGDMTEEEALELLRKTSGTV-DPGDDVRMKMTK 246          
BLAST of mRNA_Ecto-sp13_S_contig1629.4557.1 vs. uniprot
Match: A0A6H5JLW6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLW6_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 7.070e-39
Identity = 76/112 (67.86%), Postives = 88/112 (78.57%), Query Frame = 2
Query:    2 KKRLLALLQGVAREMGASPTDTPHGVPHVLDNLEQVQQHLGIMATTGIYPRLVVLHDVWEREVVDALLPLGLKVLLTTRDRSKISVQGGCLELGDMTEEEALELLLKTSMTV 337
            K RLL LLQG+AREMGA+P   PHG P  LD+LE V QHL  + +TG  PRLVVL DV EREVV+ALLPLGLK+++TTRDRS + V GGCLE+GDMTEEEALELL+  S  V
Sbjct:   37 KNRLLPLLQGLAREMGAAPAHAPHGNPGDLDSLEHVMQHLTTVVSTGTSPRLVVLDDVLEREVVEALLPLGLKLVVTTRDRSVVGVPGGCLEVGDMTEEEALELLMLASGAV 148          
BLAST of mRNA_Ecto-sp13_S_contig1629.4557.1 vs. uniprot
Match: A0A6H5KQU6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQU6_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 5.730e-33
Identity = 83/152 (54.61%), Postives = 97/152 (63.82%), Query Frame = 2
Query:    2 KKRLLALLQGVAREMGASPTDTPHGVPHVLDNLEQVQQHLGIMATTGIYPRLVVLHDVWEREVVDALLPLGLKVLLTTRDRSKISVQGGCLELGDMTEEEALELLLKTS--------------MTVGQPGNDVRTQITKFN--MDSGC*ALW 409
            K  LL L+Q +AREMGA      HGVP+VLD LEQV QH+  +A+TG  PRLVVL DVWEREVVDALL L LKVL+TTRD S + V G  LE  DM E+EA+ELLLKTS              MTVG+P N +  Q+TK    M +   A W
Sbjct:  171 KTSLLPLMQTLAREMGA------HGVPYVLDGLEQVGQHVAAVASTGTSPRLVVLDDVWEREVVDALLRLKLKVLVTTRDHSVVGVPGTRLEPEDMAEDEAMELLLKTSVPKNKALEKLIKAAMTVGRPANFL-AQMTKVREIMTAAAAAAW 315          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1629.4557.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A6H5LJA6_9PHAE1.620e-5677.60NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KU94_9PHAE2.560e-5477.60NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G722_ECTSI5.190e-5275.20NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KXS7_9PHAE4.120e-5173.60NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G720_ECTSI1.070e-4771.20NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D8LPV9_ECTSI1.420e-4771.77NB-ARC and TPR repeat-containig protein n=1 Tax=Ec... [more]
D8LGG5_ECTSI4.470e-4671.43NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7FUD7_ECTSI5.960e-4671.20NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5JLW6_9PHAE7.070e-3967.86NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KQU6_9PHAE5.730e-3354.61NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1629contigEcto-sp13_S_contig1629:7140..7786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score171.0
Seed ortholog evalue3.3e-40
Seed eggNOG ortholog2880.D7G722
Model size454
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
Cds size357
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462857.7622147-UTR-Ecto-sp13_S_contig1629:7139..71821681462857.7622147-UTR-Ecto-sp13_S_contig1629:7139..7182Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1629 7140..7182 +
1681462857.8046482-UTR-Ecto-sp13_S_contig1629:7732..77861681462857.8046482-UTR-Ecto-sp13_S_contig1629:7732..7786Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1629 7733..7786 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462857.7771513-CDS-Ecto-sp13_S_contig1629:7182..75151681462857.7771513-CDS-Ecto-sp13_S_contig1629:7182..7515Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1629 7183..7515 +
1681462857.7938316-CDS-Ecto-sp13_S_contig1629:7708..77321681462857.7938316-CDS-Ecto-sp13_S_contig1629:7708..7732Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1629 7709..7732 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1629.4557.1prot_Ecto-sp13_S_contig1629.4557.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1629 7183..7732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1629.4557.1

>prot_Ecto-sp13_S_contig1629.4557.1 ID=prot_Ecto-sp13_S_contig1629.4557.1|Name=mRNA_Ecto-sp13_S_contig1629.4557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
MGASPTDTPHGVPHVLDNLEQVQQHLGIMATTGIYPRLVVLHDVWEREVV
DALLPLGLKVLLTTRDRSKISVQGGCLELGDMTEEEALELLLKTSMTVGQ
PGNDVRTQITKFNMDSGC*
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mRNA from alignment at Ecto-sp13_S_contig1629:7140..7786+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1629.4557.1 ID=mRNA_Ecto-sp13_S_contig1629.4557.1|Name=mRNA_Ecto-sp13_S_contig1629.4557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=647bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1629:7140..7786+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAGAAAAGGCTTCTGGCTCTCCTCCAGGGCGTGGCCAGGGAGATGGGCG CATCACCGACGGATACTCCGCACGGGGTGCCTCACGTCCTGGACAATCTC GAGCAGGTGCAGCAGCACCTGGGTATAATGGCAACCACAGGCATCTACCC ACGCCTGGTGGTGCTCCATGACGTGTGGGAGCGCGAGGTTGTGGATGCAC TTCTTCCTCTGGGTTTGAAGGTGCTGTTGACCACGCGTGATCGGTCTAAG ATTAGTGTTCAGGGGGGATGCTTGGAGCTGGGGGACATGACGGAGGAAGA GGCGCTGGAGCTGCTGCTGAAGACGAGTATGACTGTGGGTCAGCCCGGGA ACGATGTCCGGACGCAGATAACCAAGGTGATGCACGTTGATTTAGCTGGT GTTGTGGCTTCTCCTATGAGTTAGTTACAAGCTTGATGCTGCGTGGACGC ACATTGTCAAAGCACGTACCGATTAGGGAAATGCAGAGAGCGTCCTTTTT TAGCTGATACGCCTTCTGTAAACGAAGTGCCGTATGCAATTTGCCTTCGA ACCTCATCGTCGAGCTCAGTTCAACATGGATTCAGGTTGTTGAGCGCTGT GGGCGCCTGCCGCTGGTGCTCGCCATTGCGGGTTCCATGCCAGTCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1629:7140..7786+

>mRNA_Ecto-sp13_S_contig1629.4557.1 ID=mRNA_Ecto-sp13_S_contig1629.4557.1|Name=mRNA_Ecto-sp13_S_contig1629.4557.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1629:7140..7786+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCGCATCACCGACGGATACTCCGCACGGGGTGCCTCACGTCCTGGA
CAATCTCGAGCAGGTGCAGCAGCACCTGGGTATAATGGCAACCACAGGCA
TCTACCCACGCCTGGTGGTGCTCCATGACGTGTGGGAGCGCGAGGTTGTG
GATGCACTTCTTCCTCTGGGTTTGAAGGTGCTGTTGACCACGCGTGATCG
GTCTAAGATTAGTGTTCAGGGGGGATGCTTGGAGCTGGGGGACATGACGG
AGGAAGAGGCGCTGGAGCTGCTGCTGAAGACGAGTATGACTGTGGGTCAG
CCCGGGAACGATGTCCGGACGCAGATAACCAAGTTCAACATGGATTCAGG
TTGTTGA
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