mRNA_Ecto-sp13_S_contig1629.4556.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1629.4556.1
Unique NamemRNA_Ecto-sp13_S_contig1629.4556.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1629.4556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1629contigEcto-sp13_S_contig1629:4774..6205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1432
Hectar predicted targeting categoryother localisation
Exons1
Cds size204
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462857.71349-UTR-Ecto-sp13_S_contig1629:4773..49601681462857.71349-UTR-Ecto-sp13_S_contig1629:4773..4960Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1629 4774..4960 +
1681462857.731331-UTR-Ecto-sp13_S_contig1629:5164..62051681462857.731331-UTR-Ecto-sp13_S_contig1629:5164..6205Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1629 5165..6205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462857.7227683-CDS-Ecto-sp13_S_contig1629:4960..51641681462857.7227683-CDS-Ecto-sp13_S_contig1629:4960..5164Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1629 4961..5164 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1629.4556.1prot_Ecto-sp13_S_contig1629.4556.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1629 4961..5164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1629.4556.1

>prot_Ecto-sp13_S_contig1629.4556.1 ID=prot_Ecto-sp13_S_contig1629.4556.1|Name=mRNA_Ecto-sp13_S_contig1629.4556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
MDPFKELLGAVKRIEEAIEGEHVVKSTMRIRMRDYGSVIQELQDSTPAMF
QHERKRLQGVGMHSKPV*
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mRNA from alignment at Ecto-sp13_S_contig1629:4774..6205+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1629.4556.1 ID=mRNA_Ecto-sp13_S_contig1629.4556.1|Name=mRNA_Ecto-sp13_S_contig1629.4556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1432bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1629:4774..6205+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTCAACCATGCTGCGAAGCCGCCAGACAGATTGTATGGAAAAATGCAG
CGTTGCAATAAGTTCCATGTGCAACCTGGGTAGTGACGCGTGCTCGAACA
TGTTGTGTTCTCTGAGCTGCTCGTAGTGATGATGTGCGTTAGACTCACCC
TGTTGTCCTCTCTTGGTTGTCCTTTGCCTGCCTTCAGATGGACCCGTTCA
AGGAGCTCCTAGGGGCGGTCAAGAGGATCGAAGAGGCTATCGAGGGTGAG
CATGTCGTCAAATCGACGATGCGCATCCGGATGAGGGACTACGGCAGTGT
AATTCAAGAGCTGCAAGACTCAACTCCCGCGATGTTCCAGCACGAGCGGA
AGAGGTTGCAGGGTGTTGGGATGCACAGTAAACCTGTGTAGGTTGTATCC
CTGGCAGTGGCCACCGTGTAGTAACAGTGTGCAGAGGCTCACAGAGTGAC
TGTAAAGACTCGCGATGTCCGAACGAAGTTGCGGGCGGCCGCGCTTGGCG
CGGGCTTTGGGCTCCGGGCACGGACGACCATCAACAATGTGACACGTGCG
GCCGCCTCATGATATGGTTCCCAGAACATCTTTTCAAACCCATGTCCATC
AAATTTTCCGGCAGATTTAATGAGTTTGTCAAGCAGGTCGTGAGCGTCCG
TCGTGTGGGCTGATCCATGATGACGATGCGGAGGACAGGTCGAACTAGAC
GATGACGTGGGCGTGCGAAGTACTAGACGATGAAGTGGGCTACTGAAGTC
CAAGTCGTCCATGCCGCCGCAGTCCAACTTCTACGGTCGTATCCCAACGC
AGCAGGAACGTGCGCGGAAATTGGGGAGACTGGTCGTTAGAAACCGACAG
TCCCGCGTGTACCAGGAAGGCTCACGCTTGATGAGTATCTGGTGTAGACG
GCGATGTAGGCCGATGTAGTGGCAAGCATCTCTGATGTACGTGCCTTTTT
CTTGGCTAAGCTGCTGAAGAACCTGCCGAACTAACAGTATGTGTACCGTT
CACCTGATGTCCCGTCGAGCTCAGGTCTTGCCCTCTCGAAAAATCAGCGA
AAAGAAATGCGGAGAAACTACGATGTCTCTGAATAACGATCCCCCGATGG
AGGGTAGACGCCGAGGGTAGCTTGTTGAACGTGTAGAACTTGCAAAGCGC
GTAGAATGTGAAATGGACGTCCCAGATGAAGTCGGGGATGAGGCCGACGA
ACTTGATGGAAGTCCTCACGTGCCCCGAAGAAGAAGTGCTGGCCAGCGGT
AGATTCTTCGGAACTCGATGCGTTGTGCCGATCTTGGGGTGTACGCGACG
CTTGTGCAGATGACGCTGCTGATGCTCCCCCTTGCTGTGATGTAACGAGA
GCTGATAACCTGTTGGGATGTAAACCTGTGTAGATTGTATCCCTGGCAGT
AGCCACTGTTACAGTGTGCAGAGGCTCACAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1629:4774..6205+

>mRNA_Ecto-sp13_S_contig1629.4556.1 ID=mRNA_Ecto-sp13_S_contig1629.4556.1|Name=mRNA_Ecto-sp13_S_contig1629.4556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1629:4774..6205+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACCCGTTCAAGGAGCTCCTAGGGGCGGTCAAGAGGATCGAAGAGGC
TATCGAGGGTGAGCATGTCGTCAAATCGACGATGCGCATCCGGATGAGGG
ACTACGGCAGTGTAATTCAAGAGCTGCAAGACTCAACTCCCGCGATGTTC
CAGCACGAGCGGAAGAGGTTGCAGGGTGTTGGGATGCACAGTAAACCTGT
GTAG
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