mRNA_Ecto-sp13_S_contig1629.4559.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1629.4559.1
Unique NamemRNA_Ecto-sp13_S_contig1629.4559.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1629.4559.1 vs. uniprot
Match: A0A6H5L0N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N7_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 8.470e-8
Identity = 34/43 (79.07%), Postives = 35/43 (81.40%), Query Frame = 3 
Query:  114 GGGRTGGGSEEIEEDGARVRSVKPRPRKGLAAGSNEERLPRRP 242
            GG  TGGGS EIEE  ARV SVKPRPR+G AAGS EERLPRRP
Sbjct:   38 GGAGTGGGSVEIEE-AARVGSVKPRPRRGGAAGSMEERLPRRP 79
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1629.4559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L0N7_9PHAE8.470e-879.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1629contigEcto-sp13_S_contig1629:12550..13723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size311
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462857.6481183-CDS-Ecto-sp13_S_contig1629:12549..126631681462857.6481183-CDS-Ecto-sp13_S_contig1629:12549..12663Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1629 12550..12663 +
1681462857.6607368-CDS-Ecto-sp13_S_contig1629:13379..134361681462857.6607368-CDS-Ecto-sp13_S_contig1629:13379..13436Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1629 13380..13436 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462857.670171-UTR-Ecto-sp13_S_contig1629:13436..135371681462857.670171-UTR-Ecto-sp13_S_contig1629:13436..13537Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1629 13437..13537 +
1681462857.6818058-UTR-Ecto-sp13_S_contig1629:13684..137231681462857.6818058-UTR-Ecto-sp13_S_contig1629:13684..13723Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1629 13685..13723 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1629.4559.1prot_Ecto-sp13_S_contig1629.4559.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1629 12550..13436 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1629.4559.1

>prot_Ecto-sp13_S_contig1629.4559.1 ID=prot_Ecto-sp13_S_contig1629.4559.1|Name=mRNA_Ecto-sp13_S_contig1629.4559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
LVSATRSVIDRDNTVRRWDVSSDRALHRADFARSVLQQVGVGLEEALRKL
RRTGRG*
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mRNA from alignment at Ecto-sp13_S_contig1629:12550..13723+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1629.4559.1 ID=mRNA_Ecto-sp13_S_contig1629.4559.1|Name=mRNA_Ecto-sp13_S_contig1629.4559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1629:12550..13723+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGTGTCTGCCACGCGCTCGGTGATCGATCGTGACAATACCGTCCGTCG
CTGGGACGTATCTTCTGATAGAGCCTTACACAGAGCGGACTTCGCGCGAA
GTGTTCTTCAGCAGGTAGATCCATTTTGTGCAAAGACACACATTTTTTTA
CGAACTTAACCGTTTCGGCGCTCCAGCTACGTGACCTTTTCACTCCGTCC
ATAATCATCACGGCTATGTTGTCCAACCCCTTGTTGCGGTCTCTCTCGTA
TTACTTCCAATGGTTGAGGTTGTGCGATTCTCTGCACTTGAAATTGGTGT
TCACGAAGTTTTGCGGGATACTGTCGCTGAAGATATGATAGCCTCAGAGG
TCTTCTCGATTAGGTTTTCGGAATATCGCACAACAGGTTCTTGTAGAGTT
CTTTTATTTTTGTCGTCCATAAATCAACAACACGCAGTCGGAGTATCTTT
ACGGTGTCTCTGTGCCCGAAAGGTGAACATTTGAACAACATATTGGTGTT
GAGCATTTGTTTCAGCAGGTCCGCCGCGTCCTCTCTCGTGATGTGTTGCA
TAAATTCCTCAAAGACGGGGTGCACGATTATTGCGCGGGTATCTGCCTTG
GCGACAACACTCTTGCTCGGTCGGCAACTACCGCAATTTCCACGCAGGCC
TCCTCCCTGATTCCTGCTGGAGTGATCCCTCCATCGTCCGGTCATTGTCG
AGCCATCGTTCAGGCACCCACCGTCCGGTCGTCGTTCGGCCGCTGCGCCT
TGGTGACTCTGCTTCTTGGTGCCTGAACGTGCCCAACCCTAACTTGTGAC
CTTTTGCGTTTTCGCGATATCTCATTGCAGGTGGGGGTCGGACTGGAGGA
GGCTCTGAGGAAATTGAGGAGGACGGGGCGAGGGTGAGGTCGGTCAAGCC
CAGGCCGAGGAAGGGGCTGGCGGCCGGCAGCAACGAGGAGAGGCTACCGC
GGAGGCCGGGAGCGCGGCCTACCGGAGGACTCTTGAAGGTGTTCTTTTGT
TTCGAAAGAAACAGTTTTTGCATTGTAGCTTCTACAGGCAACTTTGGCCT
CGTTCTCCGCTCCCGGATAAGCGGTTGGAAACGCAGTCTACCCCGGAATT
TTGAAGGTGTGTGTTTTTACGATGGCTCACTACAGGTGGGGCCGGGATCG
GAGGAGGCTTGGCAGAAATTGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1629:12550..13723+

>mRNA_Ecto-sp13_S_contig1629.4559.1 ID=mRNA_Ecto-sp13_S_contig1629.4559.1|Name=mRNA_Ecto-sp13_S_contig1629.4559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1629:12550..13723+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGTGTCTGCCACGCGCTCGGTGATCGATCGTGACAATACCGTCCGTCG
CTGGGACGTATCTTCTGATAGAGCCTTACACAGAGCGGACTTCGCGCGAA
GTGTTCTTCAGCAGGTGGGGGTCGGACTGGAGGAGGCTCTGAGGAAATTG
AGGAGGACGGGGCGAGGGTGA
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