prot_Ecto-sp13_S_contig16288.4555.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16288.4555.1
Unique Nameprot_Ecto-sp13_S_contig16288.4555.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length70
Homology
BLAST of mRNA_Ecto-sp13_S_contig16288.4555.1 vs. uniprot
Match: A0A6H5JTK0_9PHAE (Replication protein A subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK0_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 3.180e-36
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0
Query:    1 MEGAWQCEKCNQTHPECQRRYMLNMQISDNTGKAWVTAFNDQAVELLDNRTADELFQMKEEGN 63
            MEGAWQCEKCNQTHPECQRRYMLNMQISDNTGKAWVTAFNDQAVELLDNRTADELFQMKEEGN
Sbjct:  546 MEGAWQCEKCNQTHPECQRRYMLNMQISDNTGKAWVTAFNDQAVELLDNRTADELFQMKEEGN 608          
BLAST of mRNA_Ecto-sp13_S_contig16288.4555.1 vs. uniprot
Match: D7FUU1_ECTSI (Replication protein A subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU1_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 5.640e-36
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 0
Query:    1 MEGAWQCEKCNQTHPECQRRYMLNMQISDNTGKAWVTAFNDQAVELLDNRTADELFQMKEEGN 63
            MEGAWQCEKCNQTHPECQRRYML+MQISDNTGKAWVTAFNDQ VELLDNRTADELFQMKEEGN
Sbjct:  297 MEGAWQCEKCNQTHPECQRRYMLSMQISDNTGKAWVTAFNDQGVELLDNRTADELFQMKEEGN 359          
BLAST of mRNA_Ecto-sp13_S_contig16288.4555.1 vs. uniprot
Match: A0A835Z8X4_9STRA (Replication protein A subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8X4_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 9.130e-14
Identity = 29/62 (46.77%), Postives = 46/62 (74.19%), Query Frame = 0
Query:    1 MEGAWQCEKCNQTHPECQRRYMLNMQISDNTGKAWVTAFNDQAVELLDNRTADELFQMKEEG 62
            M+  W+CEKC++++P C+RRY+ ++ +SD+TG+ W +AFND A  +L   +ADELF+ K  G
Sbjct:  525 MDQGWRCEKCSRSYPNCRRRYIASLAMSDHTGQTWFSAFNDVAQPMLAQHSADELFEWKTSG 586          
BLAST of mRNA_Ecto-sp13_S_contig16288.4555.1 vs. uniprot
Match: A0A507DRR8_9FUNG (Replication protein A subunit n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DRR8_9FUNG)

HSP 1 Score: 73.2 bits (178), Expect = 1.710e-13
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 0
Query:    3 GAWQCEKCNQTHPECQRRYMLNMQISDNTGKAWVTAFNDQAVELLDNRTADELFQMKEEGNVSCTSL 69
            G+W+CEKC++ +P    RYMLN  +SD TG  WVTAFN+QA +LL ++ ADE+ Q+K+E   S T++
Sbjct:  546 GSWRCEKCDKMYPGPSYRYMLNFALSDFTGVIWVTAFNEQAEQLLGHK-ADEMAQLKQENEASFTAI 611          
BLAST of mRNA_Ecto-sp13_S_contig16288.4555.1 vs. uniprot
Match: A0A8J2SMX7_9STRA (Replication protein A subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SMX7_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.330e-13
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 0
Query:    2 EGAWQCEKCNQTHPECQRRYMLNMQISDNTGKAWVTAFNDQAVELLDNRTADELFQMKEE 61
            +G W CEKCN T  ECQRRY+++    D++G+AWV+AFN+ A+EL     AD+L   KEE
Sbjct:  480 DGTWMCEKCNSTSAECQRRYIVSCTFIDDSGQAWVSAFNESALELFGKVDADQLAVYKEE 539          
BLAST of mRNA_Ecto-sp13_S_contig16288.4555.1 vs. uniprot
Match: A0A1D9QCW2_SCLS1 (Replication protein A subunit n=17 Tax=Sclerotiniaceae TaxID=28983 RepID=A0A1D9QCW2_SCLS1)

HSP 1 Score: 70.1 bits (170), Expect = 2.060e-12
Identity = 28/59 (47.46%), Postives = 46/59 (77.97%), Query Frame = 0
Query:    2 EGAWQCEKCNQTHPECQRRYMLNMQISDNTGKAWVTAFNDQAVELLDNRTADELFQMKE 60
            +G W+CEKCNQTHP+ + RY+L++ ++D+TG+ W+TAF D+   L+   +ADE+ ++KE
Sbjct:  488 DGTWRCEKCNQTHPKPEYRYILSLNVNDHTGQLWLTAF-DEVGRLIMGMSADEMMELKE 545          
BLAST of mRNA_Ecto-sp13_S_contig16288.4555.1 vs. uniprot
Match: A0A138ZXL7_GONPJ (Replication protein A subunit n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A138ZXL7_GONPJ)

HSP 1 Score: 68.9 bits (167), Expect = 5.280e-12
Identity = 30/61 (49.18%), Postives = 46/61 (75.41%), Query Frame = 0
Query:    3 GAWQCEKCNQTHPECQRRYMLNMQISDNTGKAWVTAFNDQAVELLDNRTADELFQMKEEGN 63
            G W+CEKCN+T+PE   RY+L++ +SD+TG+AW+TAFN+  V+LL     D L ++K+ G+
Sbjct:  536 GQWRCEKCNKTYPEPHYRYILSVSVSDHTGQAWLTAFNEIGVQLLGMEAGDVL-RLKDNGS 595          
BLAST of mRNA_Ecto-sp13_S_contig16288.4555.1 vs. uniprot
Match: A0A1U7LHU8_NEOID (Replication protein A subunit n=1 Tax=Neolecta irregularis (strain DAH-3) TaxID=1198029 RepID=A0A1U7LHU8_NEOID)

HSP 1 Score: 68.2 bits (165), Expect = 9.780e-12
Identity = 26/60 (43.33%), Postives = 47/60 (78.33%), Query Frame = 0
Query:    2 EGAWQCEKCNQTHPECQRRYMLNMQISDNTGKAWVTAFNDQAVELLDNRTADELFQMKEE 61
            +G W+CEKC++++P+   RY++ + ++D+TG+AW + F+D   +++  +TADELFQ+KEE
Sbjct:  406 DGQWRCEKCDKSYPKPNHRYIMTISVNDHTGQAWFSTFDDVGKQIM-GKTADELFQLKEE 464          
BLAST of mRNA_Ecto-sp13_S_contig16288.4555.1 vs. uniprot
Match: A0A5J9V089_9POAL (Replication protein A subunit n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9V089_9POAL)

HSP 1 Score: 67.4 bits (163), Expect = 1.840e-11
Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 0
Query:    3 GAWQCEKCNQTHPECQRRYMLNMQISDNTGKAWVTAFNDQAVELLDNRTADELFQMKEEGN 63
            G W C+KCNQ  PEC  RY+L +QI D+TG  W TAF +   ELL   +A EL+  KE G+
Sbjct:  534 GNWLCDKCNQEFPECDYRYLLQIQIQDHTGTTWATAFQETGQELL-GCSARELYMFKENGD 593          
BLAST of mRNA_Ecto-sp13_S_contig16288.4555.1 vs. uniprot
Match: A0A1D1XHA3_9ARAE (Replication protein A subunit n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XHA3_9ARAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.860e-11
Identity = 28/60 (46.67%), Postives = 43/60 (71.67%), Query Frame = 0
Query:    2 EGAWQCEKCNQTHPECQRRYMLNMQISDNTGKAWVTAFNDQAVELLDNRTADELFQMKEE 61
            +G W+C++C+Q+ PEC+ RY+L +QI D+TG  WVTAF +   E++   TA EL+ +K E
Sbjct:  594 DGTWRCDRCDQSFPECEYRYLLQLQIQDHTGLTWVTAFQESGEEII-GVTAKELYLLKYE 652          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16288.4555.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTK0_9PHAE3.180e-36100.00Replication protein A subunit n=1 Tax=Ectocarpus s... [more]
D7FUU1_ECTSI5.640e-3696.83Replication protein A subunit n=1 Tax=Ectocarpus s... [more]
A0A835Z8X4_9STRA9.130e-1446.77Replication protein A subunit n=1 Tax=Tribonema mi... [more]
A0A507DRR8_9FUNG1.710e-1350.75Replication protein A subunit n=2 Tax=Synchytrium ... [more]
A0A8J2SMX7_9STRA4.330e-1351.67Replication protein A subunit n=1 Tax=Pelagomonas ... [more]
A0A1D9QCW2_SCLS12.060e-1247.46Replication protein A subunit n=17 Tax=Sclerotinia... [more]
A0A138ZXL7_GONPJ5.280e-1249.18Replication protein A subunit n=1 Tax=Gonapodya pr... [more]
A0A1U7LHU8_NEOID9.780e-1243.33Replication protein A subunit n=1 Tax=Neolecta irr... [more]
A0A5J9V089_9POAL1.840e-1150.82Replication protein A subunit n=1 Tax=Eragrostis c... [more]
A0A1D1XHA3_9ARAE1.860e-1146.67Replication protein A subunit n=1 Tax=Anthurium am... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013955Replication factor A, C-terminalPFAMPF08646Rep_fac-A_Ccoord: 2..67
e-value: 9.8E-21
score: 74.0
NoneNo IPR availableGENE3D2.40.50.140coord: 1..70
e-value: 8.9E-23
score: 82.5
NoneNo IPR availablePANTHERPTHR23273REPLICATION FACTOR A 1, RFA1coord: 3..60
NoneNo IPR availablePANTHERPTHR23273:SF4REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNITcoord: 3..60
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 3..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16288contigEcto-sp13_S_contig16288:25..809 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16288.4555.1mRNA_Ecto-sp13_S_contig16288.4555.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16288 4..809 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16288.4555.1 ID=prot_Ecto-sp13_S_contig16288.4555.1|Name=mRNA_Ecto-sp13_S_contig16288.4555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
MEGAWQCEKCNQTHPECQRRYMLNMQISDNTGKAWVTAFNDQAVELLDNR
TADELFQMKEEGNVSCTSLF
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013955Rep_factor-A_C
IPR012340NA-bd_OB-fold