mRNA_Ecto-sp13_S_contig16288.4555.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16288.4555.1
Unique NamemRNA_Ecto-sp13_S_contig16288.4555.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16288.4555.1 vs. uniprot
Match: A0A6H5JTK0_9PHAE (Replication protein A subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK0_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 5.130e-39
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    7 KVTETMEGAWQCEKCNQTHPECQRRYMLNMQISDNTGKAWVTAFNDQAVELLDNRTADELFQMKEEGN 210
            KVTETMEGAWQCEKCNQTHPECQRRYMLNMQISDNTGKAWVTAFNDQAVELLDNRTADELFQMKEEGN
Sbjct:  541 KVTETMEGAWQCEKCNQTHPECQRRYMLNMQISDNTGKAWVTAFNDQAVELLDNRTADELFQMKEEGN 608
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BLAST of mRNA_Ecto-sp13_S_contig16288.4555.1 vs. uniprot
Match: D7FUU1_ECTSI (Replication protein A subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU1_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 6.330e-39
Identity = 66/68 (97.06%), Postives = 67/68 (98.53%), Query Frame = 1 
Query:    7 KVTETMEGAWQCEKCNQTHPECQRRYMLNMQISDNTGKAWVTAFNDQAVELLDNRTADELFQMKEEGN 210
            KVTETMEGAWQCEKCNQTHPECQRRYML+MQISDNTGKAWVTAFNDQ VELLDNRTADELFQMKEEGN
Sbjct:  292 KVTETMEGAWQCEKCNQTHPECQRRYMLSMQISDNTGKAWVTAFNDQGVELLDNRTADELFQMKEEGN 359
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BLAST of mRNA_Ecto-sp13_S_contig16288.4555.1 vs. uniprot
Match: A0A835Z8X4_9STRA (Replication protein A subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8X4_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 5.370e-15
Identity = 32/67 (47.76%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:    7 KVTETMEGAWQCEKCNQTHPECQRRYMLNMQISDNTGKAWVTAFNDQAVELLDNRTADELFQMKEEG 207
            KV E M+  W+CEKC++++P C+RRY+ ++ +SD+TG+ W +AFND A  +L   +ADELF+ K  G
Sbjct:  520 KVVEEMDQGWRCEKCSRSYPNCRRRYIASLAMSDHTGQTWFSAFNDVAQPMLAQHSADELFEWKTSG 586
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BLAST of mRNA_Ecto-sp13_S_contig16288.4555.1 vs. uniprot
Match: A0A8J2SMX7_9STRA (Replication protein A subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SMX7_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 4.750e-14
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    7 KVTETMEGAWQCEKCNQTHPECQRRYMLNMQISDNTGKAWVTAFNDQAVELLDNRTADELFQMKEE 204
            KV +  +G W CEKCN T  ECQRRY+++    D++G+AWV+AFN+ A+EL     AD+L   KEE
Sbjct:  474 KVVQNTDGTWMCEKCNSTSAECQRRYIVSCTFIDDSGQAWVSAFNESALELFGKVDADQLAVYKEE 539
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BLAST of mRNA_Ecto-sp13_S_contig16288.4555.1 vs. uniprot
Match: A0A138ZXL7_GONPJ (Replication protein A subunit n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A138ZXL7_GONPJ)

HSP 1 Score: 74.3 bits (181), Expect = 8.900e-14
Identity = 34/68 (50.00%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:    7 KVTETMEGAWQCEKCNQTHPECQRRYMLNMQISDNTGKAWVTAFNDQAVELLDNRTADELFQMKEEGN 210
            KVTE   G W+CEKCN+T+PE   RY+L++ +SD+TG+AW+TAFN+  V+LL     D L ++K+ G+
Sbjct:  529 KVTEEAPGQWRCEKCNKTYPEPHYRYILSVSVSDHTGQAWLTAFNEIGVQLLGMEAGDVL-RLKDNGS 595
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BLAST of mRNA_Ecto-sp13_S_contig16288.4555.1 vs. uniprot
Match: A0A1D9QCW2_SCLS1 (Replication protein A subunit n=17 Tax=Sclerotiniaceae TaxID=28983 RepID=A0A1D9QCW2_SCLS1)

HSP 1 Score: 73.9 bits (180), Expect = 1.210e-13
Identity = 31/67 (46.27%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:    1 AEKVTETMEGAWQCEKCNQTHPECQRRYMLNMQISDNTGKAWVTAFNDQAVELLDNRTADELFQMKE 201
            ++KV E  +G W+CEKCNQTHP+ + RY+L++ ++D+TG+ W+TAF D+   L+   +ADE+ ++KE
Sbjct:  480 SKKVVEENDGTWRCEKCNQTHPKPEYRYILSLNVNDHTGQLWLTAF-DEVGRLIMGMSADEMMELKE 545
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BLAST of mRNA_Ecto-sp13_S_contig16288.4555.1 vs. uniprot
Match: A0A507DRR8_9FUNG (Replication protein A subunit n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DRR8_9FUNG)

HSP 1 Score: 72.4 bits (176), Expect = 4.250e-13
Identity = 34/67 (50.75%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:   28 GAWQCEKCNQTHPECQRRYMLNMQISDNTGKAWVTAFNDQAVELLDNRTADELFQMKEEGNVSCTSL 228
            G+W+CEKC++ +P    RYMLN  +SD TG  WVTAFN+QA +LL ++ ADE+ Q+K+E   S T++
Sbjct:  546 GSWRCEKCDKMYPGPSYRYMLNFALSDFTGVIWVTAFNEQAEQLLGHK-ADEMAQLKQENEASFTAI 611
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BLAST of mRNA_Ecto-sp13_S_contig16288.4555.1 vs. uniprot
Match: A0A1U7LHU8_NEOID (Replication protein A subunit n=1 Tax=Neolecta irregularis (strain DAH-3) TaxID=1198029 RepID=A0A1U7LHU8_NEOID)

HSP 1 Score: 71.6 bits (174), Expect = 7.810e-13
Identity = 29/66 (43.94%), Postives = 50/66 (75.76%), Query Frame = 1 
Query:    7 KVTETMEGAWQCEKCNQTHPECQRRYMLNMQISDNTGKAWVTAFNDQAVELLDNRTADELFQMKEE 204
            KV E  +G W+CEKC++++P+   RY++ + ++D+TG+AW + F+D   +++  +TADELFQ+KEE
Sbjct:  400 KVIEDSDGQWRCEKCDKSYPKPNHRYIMTISVNDHTGQAWFSTFDDVGKQIM-GKTADELFQLKEE 464
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BLAST of mRNA_Ecto-sp13_S_contig16288.4555.1 vs. uniprot
Match: K0RDF7_THAOC (Replication protein A subunit n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RDF7_THAOC)

HSP 1 Score: 71.2 bits (173), Expect = 1.030e-12
Identity = 28/61 (45.90%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    7 KVTETMEGAWQCEKCNQTHPECQRRYMLNMQISDNTGKAWVTAFNDQAVELLDNRTADELF 189
            K T+T +G W C+KC QT P+C RR++ +  ++D+T  +W++ FN QA ELL   TAD+L+
Sbjct:  309 KATQTSDGNWHCDKCQQTLPDCVRRFIFSGTVADDTSTSWISVFNQQAEELLGGATADDLY 369
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BLAST of mRNA_Ecto-sp13_S_contig16288.4555.1 vs. uniprot
Match: A0A835KVG8_9POAL (Replication protein A subunit n=2 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835KVG8_9POAL)

HSP 1 Score: 71.2 bits (173), Expect = 1.080e-12
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    7 KVTETMEGAWQCEKCNQTHPECQRRYMLNMQISDNTGKAWVTAFNDQAVELLDNRTADELFQMKE 201
            KVT++  G W C+KCNQ  PEC+ RY+L +QI D++G AW TAF +   ELL   +A EL+ +KE
Sbjct:  526 KVTKSDSGNWVCDKCNQEFPECEYRYLLQLQIQDHSGTAWATAFQEPGEELL-GCSARELYMLKE 589
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16288.4555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTK0_9PHAE5.130e-39100.00Replication protein A subunit n=1 Tax=Ectocarpus s... [more]
D7FUU1_ECTSI6.330e-3997.06Replication protein A subunit n=1 Tax=Ectocarpus s... [more]
A0A835Z8X4_9STRA5.370e-1547.76Replication protein A subunit n=1 Tax=Tribonema mi... [more]
A0A8J2SMX7_9STRA4.750e-1450.00Replication protein A subunit n=1 Tax=Pelagomonas ... [more]
A0A138ZXL7_GONPJ8.900e-1450.00Replication protein A subunit n=1 Tax=Gonapodya pr... [more]
A0A1D9QCW2_SCLS11.210e-1346.27Replication protein A subunit n=17 Tax=Sclerotinia... [more]
A0A507DRR8_9FUNG4.250e-1350.75Replication protein A subunit n=2 Tax=Synchytrium ... [more]
A0A1U7LHU8_NEOID7.810e-1343.94Replication protein A subunit n=1 Tax=Neolecta irr... [more]
K0RDF7_THAOC1.030e-1245.90Replication protein A subunit n=1 Tax=Thalassiosir... [more]
A0A835KVG8_9POAL1.080e-1250.77Replication protein A subunit n=2 Tax=Digitaria ex... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16288contigEcto-sp13_S_contig16288:4..809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score136.0
Seed ortholog evalue6.9e-30
Seed eggNOG ortholog2880.D7FUU1
Preferred nameRFA1
Model size231
KEGG koko:K07466
KEGG Pathwayko03030,ko03420,ko03430,ko03440,ko03460,map03030,map03420,map03430,map03440,map03460
KEGG ModuleM00288
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000278,GO:0000280,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005662,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006265,GO:0006268,GO:0006278,GO:0006279,GO:0006281,GO:0006289,GO:0006302,GO:0006310,GO:0006312,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007063,GO:0007088,GO:0007127,GO:0007131,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010638,GO:0010639,GO:0010833,GO:0010948,GO:0016043,GO:0016567,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022402,GO:0022414,GO:0030491,GO:0030894,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032200,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032392,GO:0032446,GO:0032508,GO:0032879,GO:0032880,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035825,GO:0035861,GO:0036211,GO:0042162,GO:0042592,GO:0043047,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043565,GO:0043596,GO:0043601,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045184,GO:0045786,GO:0045839,GO:0045875,GO:0045930,GO:0045935,GO:0046483,GO:0048285,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051098,GO:0051101,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051276,GO:0051321,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060249,GO:0060255,GO:0060341,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070034,GO:0070647,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0071922,GO:0071923,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0098687,GO:0098847,GO:0106111,GO:0106112,GO:0140013,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902969,GO:1903046,GO:1903047,GO:1903827,GO:1903828,GO:1904356,GO:1904358,GO:1905405,GO:1905412,GO:1905634,GO:2000112,GO:2000278,GO:2000573,GO:2001251,GO:2001252
Exons2
EggNOG free text desc.DNA recombination
EggNOG OGsCOG1599@1,KOG0851@2759
Cds size210
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03000,ko03032,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462857.5868182-UTR-Ecto-sp13_S_contig16288:3..241681462857.5868182-UTR-Ecto-sp13_S_contig16288:3..24Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig16288 4..24 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462857.5991142-CDS-Ecto-sp13_S_contig16288:24..831681462857.5991142-CDS-Ecto-sp13_S_contig16288:24..83Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16288 25..83 +
1681462857.6157076-CDS-Ecto-sp13_S_contig16288:658..8091681462857.6157076-CDS-Ecto-sp13_S_contig16288:658..809Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16288 659..809 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16288.4555.1prot_Ecto-sp13_S_contig16288.4555.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16288 25..809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16288.4555.1

>prot_Ecto-sp13_S_contig16288.4555.1 ID=prot_Ecto-sp13_S_contig16288.4555.1|Name=mRNA_Ecto-sp13_S_contig16288.4555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
MEGAWQCEKCNQTHPECQRRYMLNMQISDNTGKAWVTAFNDQAVELLDNR
TADELFQMKEEGNVSCTSLF
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mRNA from alignment at Ecto-sp13_S_contig16288:4..809+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16288.4555.1 ID=mRNA_Ecto-sp13_S_contig16288.4555.1|Name=mRNA_Ecto-sp13_S_contig16288.4555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=806bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16288:4..809+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGAAAAGGTGACGGAGACAATGGAAGGCGCGTGGCAGTGCGAGAAGTG
CAACCAGACGCACCCGGAGTGCCAACGAAGGTATGTACAAGACGTACGTT
GGCTGTGCGCTATGGTACCGTGTTCCGGTCGAGCTCACGTCTGAATCGAG
CGATGAAGAGAGAGGATGTGTACCGTAGGCGTCGGAGAAAAGGATGGAGT
ACAAGGAGCCCAGAGCAAGAACCGGAAAGTACGGTAGAGCAAGAACCGGA
TGTTTTTTCTGGTGGCGTGGGGACACCACCGCCTGAAATAGATATGTTTG
CATCCGTTTATTCTGTTCCACCGCACGATGCCGTTTTTTTTCGCCTTTGA
GCTGGTGCTTGATACGGAAACAGTGACCGCCGCCCCTGATTGGGTTGGAG
ATACCGCACCGTGGTGTGGATACCGTGGGATGACTCAAACATACGAGACG
GTAAATCTACAACAGTTTGGATTGTAGTCTACCTTTTCCGCAAGGCGTTA
GCGTCGTCGATATTTCCTGACGGTCTCTACCTTGTACCAGGTAGCTTTGT
TCCCCGCACTCGTAATGTACTAGAGGTATCATTGGTATCGAATGACTACG
ATTAGCACGTTTTCCTCACGCCCTGTCATCTCGTTCGGAACTTGGCACAA
AAAAGGTACATGTTGAACATGCAAATCTCGGATAACACCGGTAAAGCGTG
GGTGACGGCTTTCAACGACCAAGCGGTGGAGCTGCTCGACAACAGGACCG
CGGATGAGCTCTTCCAGATGAAGGAAGAGGGAAACGTAAGTTGCACGAGT
TTGTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16288:4..809+

>mRNA_Ecto-sp13_S_contig16288.4555.1 ID=mRNA_Ecto-sp13_S_contig16288.4555.1|Name=mRNA_Ecto-sp13_S_contig16288.4555.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16288:4..809+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAGGCGCGTGGCAGTGCGAGAAGTGCAACCAGACGCACCCGGAGTG
CCAACGAAGGTACATGTTGAACATGCAAATCTCGGATAACACCGGTAAAG
CGTGGGTGACGGCTTTCAACGACCAAGCGGTGGAGCTGCTCGACAACAGG
ACCGCGGATGAGCTCTTCCAGATGAAGGAAGAGGGAAACGTAAGTTGCAC
GAGTTTGTTC
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