mRNA_Ecto-sp13_S_contig16287.4554.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16287.4554.1
Unique NamemRNA_Ecto-sp13_S_contig16287.4554.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16287.4554.1 vs. uniprot
Match: D8LRQ5_ECTSI (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRQ5_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.840e-36
Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 1 
Query:    1 GVRAGAVELIVRVADALGALDTQVFLNPVLRPHLRYSLPGGSLDEATLLDALRPPVPRPVFDSAVGEVIEARRVRAA 231
            GVRAGAVELIVRVA+ALGALDTQVFL PVLRPHLRYSLPGGSLDEA LLDALRPPVPRPVFDSAVGEVIEARRVRAA
Sbjct:  482 GVRAGAVELIVRVAEALGALDTQVFLYPVLRPHLRYSLPGGSLDEAALLDALRPPVPRPVFDSAVGEVIEARRVRAA 558
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BLAST of mRNA_Ecto-sp13_S_contig16287.4554.1 vs. uniprot
Match: A0A6H5JSX2_9PHAE (Non-specific serine/threonine protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSX2_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 3.000e-35
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 1 
Query:    4 VRAGAVELIVRVADALGALDTQVFLNPVLRPHLRYSLPGGSLDEATLLDALRPPVPRPVFDSAVGEVIEARRVRA 228
            VRAGAVELIVRVA+ALGALDTQVFL PVLRPHLRYSLPGGSLDEATLLDALRPPVPRPVFDSAVGEVIE RRVRA
Sbjct:  690 VRAGAVELIVRVAEALGALDTQVFLYPVLRPHLRYSLPGGSLDEATLLDALRPPVPRPVFDSAVGEVIETRRVRA 764
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BLAST of mRNA_Ecto-sp13_S_contig16287.4554.1 vs. uniprot
Match: UPI00125E4EDB (serine/threonine-protein kinase VPS15 isoform X1 n=6 Tax=Ipomoea TaxID=4119 RepID=UPI00125E4EDB)

HSP 1 Score: 52.4 bits (124), Expect = 5.170e-5
Identity = 28/60 (46.67%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:    4 VRAGAVELIVRVADALGALDTQVFLNPVLRPHLRYSLPGGSLDEATLLDALRPPVPRPVF 183
            VR  AV  I   +++LGA+D+ VFL PV+RP LR   P     E TL   L+PPVPR ++
Sbjct:  800 VRRSAVAFIAASSESLGAVDSYVFLVPVIRPFLRRQ-PASLASEKTLFSCLKPPVPREIY 858
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BLAST of mRNA_Ecto-sp13_S_contig16287.4554.1 vs. uniprot
Match: A0A7C9DL06_OPUST (Non-specific serine/threonine protein kinase n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9DL06_OPUST)

HSP 1 Score: 51.6 bits (122), Expect = 9.100e-5
Identity = 30/64 (46.88%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:    4 VRAGAVELIVRVADALGALDTQVFLNPVLRPHLRYSLPGGSLDEATLLDALRPPVPRPVFDSAV 195
            VR  AV  I   +++LGA+D+ VFL PV+RP LR   P     E  LL  L+PPV R VF  A+
Sbjct:   89 VRRSAVSFIAASSESLGAVDSYVFLAPVVRPFLRRQ-PASLASEKALLSCLKPPVSRQVFYQAL 151
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BLAST of mRNA_Ecto-sp13_S_contig16287.4554.1 vs. uniprot
Match: A0A2P6SBM7_ROSCH (Non-specific serine/threonine protein kinase n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P6SBM7_ROSCH)

HSP 1 Score: 51.6 bits (122), Expect = 9.560e-5
Identity = 30/60 (50.00%), Postives = 35/60 (58.33%), Query Frame = 1 
Query:    4 VRAGAVELIVRVADALGALDTQVFLNPVLRPHLRYSLPGGSLDEATLLDALRPPVPRPVF 183
            VR  AV  I   +D LGA+D+ VFL PV+RP LR   P     E  LL  L+PPV R VF
Sbjct:  804 VRRSAVSFIAASSDCLGAVDSYVFLAPVIRPLLRRQ-PASLASEKALLSCLKPPVSRQVF 862
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16287.4554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LRQ5_ECTSI1.840e-3696.10Non-specific serine/threonine protein kinase n=1 T... [more]
A0A6H5JSX2_9PHAE3.000e-3596.00Non-specific serine/threonine protein kinase n=1 T... [more]
UPI00125E4EDB5.170e-546.67serine/threonine-protein kinase VPS15 isoform X1 n... [more]
A0A7C9DL06_OPUST9.100e-546.88Non-specific serine/threonine protein kinase n=1 T... [more]
A0A2P6SBM7_ROSCH9.560e-550.00Non-specific serine/threonine protein kinase n=2 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16287contigEcto-sp13_S_contig16287:2719..3900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score145.2
Seed ortholog evalue2.4e-32
Seed eggNOG ortholog2880.D8LRQ5
Model size444
KEGG koko:K08333
KEGG Pathwayko04136,ko04138,ko04140,ko04371,map04136,map04138,map04140,map04371
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005737,GO:0005768,GO:0005770,GO:0005942,GO:0006464,GO:0006468,GO:0006605,GO:0006623,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016236,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0019898,GO:0030242,GO:0031410,GO:0031967,GO:0031975,GO:0031982,GO:0032507,GO:0032991,GO:0033036,GO:0033365,GO:0034067,GO:0034271,GO:0034272,GO:0034613,GO:0035032,GO:0036211,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044232,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045053,GO:0045184,GO:0045185,GO:0045324,GO:0046907,GO:0051179,GO:0051234,GO:0051235,GO:0051641,GO:0051649,GO:0051651,GO:0061695,GO:0061919,GO:0065007,GO:0065008,GO:0070727,GO:0071561,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072665,GO:0072666,GO:0097708,GO:0098796,GO:0140096,GO:1901564,GO:1902494,GO:1990234
Exons3
EggNOG free text desc.autophagy of peroxisome
EggNOG OGsKOG1240@1,KOG1240@2759
EC2.7.11.1
Cds size441
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462857.5326898-CDS-Ecto-sp13_S_contig16287:2719..28961681462857.5326898-CDS-Ecto-sp13_S_contig16287:2719..2896Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16287 2720..2896 -
1681462857.5489252-CDS-Ecto-sp13_S_contig16287:3114..32741681462857.5489252-CDS-Ecto-sp13_S_contig16287:3114..3274Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16287 3115..3274 -
1681462857.558006-CDS-Ecto-sp13_S_contig16287:3796..39001681462857.558006-CDS-Ecto-sp13_S_contig16287:3796..3900Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16287 3797..3900 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16287.4554.1prot_Ecto-sp13_S_contig16287.4554.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16287 2720..3900 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16287.4554.1

>prot_Ecto-sp13_S_contig16287.4554.1 ID=prot_Ecto-sp13_S_contig16287.4554.1|Name=mRNA_Ecto-sp13_S_contig16287.4554.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
GVRAGAVELIVRVADALGALDTQVFLNPVLRPHLRYSLPGGSLDEATLLD
ALRPPVPRPVFDSAVGEVIEARRVRAAGGGGGGGAGAEDGGQPLQQFPAR
DNNAAAAGDYQRQAADSRGGGNGGPDHSQTSQQQQQQQQQQRRNLSG
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mRNA from alignment at Ecto-sp13_S_contig16287:2719..3900-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16287.4554.1 ID=mRNA_Ecto-sp13_S_contig16287.4554.1|Name=mRNA_Ecto-sp13_S_contig16287.4554.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1182bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16287:2719..3900- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGTCAGGGCCGGGGCGGTGGAGCTGATCGTTCGGGTGGCGGACGCGCT
GGGCGCGCTGGACACCCAGGTCTTCTTGAACCCGGTGCTGAGACCGCACT
TGAGGTGGGAGAGAGAGCCCGGGGTGTTTTTGGCTGCATGCATAAGAGGC
TAATTGGTTTGGGTCTGTCGAGGTTGGTCACATGTCGGTGTGGTATTGGT
GTTCCCTTTGGGTGGTGTGGATAAAATTTTTGACTTGGATTTGTGTGGCC
GAATTATTTTTTACTTTTGGCAGACGAAAAAGGGTGTTTCGTTTTTTGTT
TGTTTTCCTGGTTTTGGCAGGGCATATCGGGGGGGGGGGTGAAGGGATGA
TGCAAGAATGGTCGCGGAGCCTCGTATTACTCCAAAAAGAGGAGAAAATG
GAATGACGATGGTTGCTCGCTTCTCCCGCGCCTCAACAACCTGGTGCACT
GCTGCTGCCGCTGCTACTGCTGCTGCTTTTGCTTCCGCTTCTGCTGAGGC
TTCGAAATTATTTCGATTTATTCGAGCGGCGACTTGGTACTCCAGCTGGA
CACACTGGTGCTGATGCTGCTGCCCTCGTTTACTCCATCGATCTAAATGT
ACGAATTTTCTCCTTGCTGTGTACAGGTATTCCTTGCCGGGGGGCTCGTT
GGACGAGGCCACCCTGCTCGATGCCCTCAGACCCCCCGTGCCCCGCCCCG
TGTTCGATTCCGCGGTGGGCGAAGTGATCGAGGCTAGGAGGGTAAGGGCT
GCGGGTGGGGGCGGCGGCGGCGGCGCAGGAGCAGAGGTGAGAAGCGTGTG
GGTGAGACCCCATCAACCGAGAAGTTATCTCTACGTGTAACCCAAACAGT
ATAACCGCGTGCAAGTGTGGGCGAGCCGCCAGTCTCAGCCAAACGGGCGC
TCCATCGGCGAGCGTTGACATACGCTGTACATAGCAACCGCAGCAACCAG
AGAAGAGCAAGCCACCTGAGAAACTCCGCCCCGCTACCCCCCCCACCCTC
TCAGGACGGCGGGCAGCCGCTCCAGCAGTTCCCGGCGAGGGACAACAACG
CCGCCGCCGCCGGCGACTACCAGCGACAGGCTGCCGACAGCCGGGGCGGG
GGCAACGGCGGCCCCGATCATAGCCAAACAAGCCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGAGACGAAACTTGTCGGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16287:2719..3900-

>mRNA_Ecto-sp13_S_contig16287.4554.1 ID=mRNA_Ecto-sp13_S_contig16287.4554.1|Name=mRNA_Ecto-sp13_S_contig16287.4554.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16287:2719..3900- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGTCAGGGCCGGGGCGGTGGAGCTGATCGTTCGGGTGGCGGACGCGCT
GGGCGCGCTGGACACCCAGGTCTTCTTGAACCCGGTGCTGAGACCGCACT
TGAGGTATTCCTTGCCGGGGGGCTCGTTGGACGAGGCCACCCTGCTCGAT
GCCCTCAGACCCCCCGTGCCCCGCCCCGTGTTCGATTCCGCGGTGGGCGA
AGTGATCGAGGCTAGGAGGGTAAGGGCTGCGGGTGGGGGCGGCGGCGGCG
GCGCAGGAGCAGAGGACGGCGGGCAGCCGCTCCAGCAGTTCCCGGCGAGG
GACAACAACGCCGCCGCCGCCGGCGACTACCAGCGACAGGCTGCCGACAG
CCGGGGCGGGGGCAACGGCGGCCCCGATCATAGCCAAACAAGCCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGAGACGAAACTTGTCGGGA
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