prot_Ecto-sp13_S_contig16285.4552.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig16285.4552.1
Unique Nameprot_Ecto-sp13_S_contig16285.4552.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length243
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16285.4552.1 vs. uniprot
Match: D7FIZ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ6_ECTSI)

HSP 1 Score: 397 bits (1019), Expect = 3.880e-135
Identity = 212/220 (96.36%), Postives = 215/220 (97.73%), Query Frame = 0 
Query:   24 MPAARASSSSLNPWVARRWGLVIAAVATVATVAFSLGTTASTSRSGAMTGSARVGQQSLYASPKSRGGISVAQARRPSSVRPHGRVLQEETPTVITPIVEYGTKLQIFMCNPSLEAQGNDAHLVDEARLAAALSNISGIKQADESDITVTIKTEPVDVDDVSYMCDTDGMLQWHAQVEYSAAYAGSRDTTPAVLAAQANDYVAYSSSEFKALLAGFINAE 243
            MPAARASSSSLNPWVAR WGLVIAA ATVATVAFSLGTTASTSRSGAMTGSARVGQQSLYASPKSRGGISVAQA+RPSSVRPHGRVLQEETPTVITPIVEYGTKLQIFMCNPSLE +GNDAHLVDEA LAAALSNISGIKQADE DITVTIKTEPVDVDDVSYMCDTDGMLQWHAQVEYSAAYAGSRDTTPAVLAAQANDYVAYSSS+FKALLAGFINAE
Sbjct:    1 MPAARASSSSLNPWVARNWGLVIAAAATVATVAFSLGTTASTSRSGAMTGSARVGQQSLYASPKSRGGISVAQAQRPSSVRPHGRVLQEETPTVITPIVEYGTKLQIFMCNPSLEVEGNDAHLVDEASLAAALSNISGIKQADEGDITVTIKTEPVDVDDVSYMCDTDGMLQWHAQVEYSAAYAGSRDTTPAVLAAQANDYVAYSSSQFKALLAGFINAE 220
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16285.4552.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIZ6_ECTSI3.880e-13596.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 13..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 39..59
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..38
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 60..243
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..29
NoneNo IPR availableTMHMMTMhelixcoord: 42..64

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16285contigEcto-sp13_S_contig16285:48..1208 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16285.4552.1mRNA_Ecto-sp13_S_contig16285.4552.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig16285 48..1208 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig16285.4552.1 ID=prot_Ecto-sp13_S_contig16285.4552.1|Name=mRNA_Ecto-sp13_S_contig16285.4552.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=243bp
MARDELLKRSRRGAAVSARLVRTMPAARASSSSLNPWVARRWGLVIAAVA
TVATVAFSLGTTASTSRSGAMTGSARVGQQSLYASPKSRGGISVAQARRP
SSVRPHGRVLQEETPTVITPIVEYGTKLQIFMCNPSLEAQGNDAHLVDEA
RLAAALSNISGIKQADESDITVTIKTEPVDVDDVSYMCDTDGMLQWHAQV
EYSAAYAGSRDTTPAVLAAQANDYVAYSSSEFKALLAGFINAE
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