mRNA_Ecto-sp13_S_contig16285.4552.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig16285.4552.1
Unique NamemRNA_Ecto-sp13_S_contig16285.4552.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig16285.4552.1 vs. uniprot
Match: D7FIZ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ6_ECTSI)

HSP 1 Score: 397 bits (1019), Expect = 3.880e-135
Identity = 212/220 (96.36%), Postives = 215/220 (97.73%), Query Frame = 1 
Query:   70 MPAARASSSSLNPWVARRWGLVIAAVATVATVAFSLGTTASTSRSGAMTGSARVGQQSLYASPKSRGGISVAQARRPSSVRPHGRVLQEETPTVITPIVEYGTKLQIFMCNPSLEAQGNDAHLVDEARLAAALSNISGIKQADESDITVTIKTEPVDVDDVSYMCDTDGMLQWHAQVEYSAAYAGSRDTTPAVLAAQANDYVAYSSSEFKALLAGFINAE 729
            MPAARASSSSLNPWVAR WGLVIAA ATVATVAFSLGTTASTSRSGAMTGSARVGQQSLYASPKSRGGISVAQA+RPSSVRPHGRVLQEETPTVITPIVEYGTKLQIFMCNPSLE +GNDAHLVDEA LAAALSNISGIKQADE DITVTIKTEPVDVDDVSYMCDTDGMLQWHAQVEYSAAYAGSRDTTPAVLAAQANDYVAYSSS+FKALLAGFINAE
Sbjct:    1 MPAARASSSSLNPWVARNWGLVIAAAATVATVAFSLGTTASTSRSGAMTGSARVGQQSLYASPKSRGGISVAQAQRPSSVRPHGRVLQEETPTVITPIVEYGTKLQIFMCNPSLEVEGNDAHLVDEASLAAALSNISGIKQADEGDITVTIKTEPVDVDDVSYMCDTDGMLQWHAQVEYSAAYAGSRDTTPAVLAAQANDYVAYSSSQFKALLAGFINAE 220
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig16285.4552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIZ6_ECTSI3.880e-13596.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig16285contigEcto-sp13_S_contig16285:48..1208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size729
Hectar predicted targeting categorysignal anchor
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_005010.1
Cds size729
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462857.432447-CDS-Ecto-sp13_S_contig16285:47..2841681462857.432447-CDS-Ecto-sp13_S_contig16285:47..284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16285 48..284 -
1681462857.4437191-CDS-Ecto-sp13_S_contig16285:716..12081681462857.4437191-CDS-Ecto-sp13_S_contig16285:716..1208Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig16285 717..1208 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig16285.4552.1prot_Ecto-sp13_S_contig16285.4552.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig16285 48..1208 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig16285.4552.1

>prot_Ecto-sp13_S_contig16285.4552.1 ID=prot_Ecto-sp13_S_contig16285.4552.1|Name=mRNA_Ecto-sp13_S_contig16285.4552.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=243bp
MARDELLKRSRRGAAVSARLVRTMPAARASSSSLNPWVARRWGLVIAAVA
TVATVAFSLGTTASTSRSGAMTGSARVGQQSLYASPKSRGGISVAQARRP
SSVRPHGRVLQEETPTVITPIVEYGTKLQIFMCNPSLEAQGNDAHLVDEA
RLAAALSNISGIKQADESDITVTIKTEPVDVDDVSYMCDTDGMLQWHAQV
EYSAAYAGSRDTTPAVLAAQANDYVAYSSSEFKALLAGFINAE
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mRNA from alignment at Ecto-sp13_S_contig16285:48..1208-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig16285.4552.1 ID=mRNA_Ecto-sp13_S_contig16285.4552.1|Name=mRNA_Ecto-sp13_S_contig16285.4552.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1161bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16285:48..1208- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCGTGATGAGCTACTGAAGAGGTCTCGCCGAGGTGCTGCTGTGTC
GGCAAGACTCGTGAGGACAATGCCTGCGGCAAGGGCATCGTCATCTTCGT
TGAACCCGTGGGTCGCGCGAAGGTGGGGGTTGGTCATTGCGGCAGTTGCG
ACAGTGGCCACCGTCGCCTTCTCGCTGGGGACGACGGCAAGTACCTCGAG
GTCCGGTGCGATGACCGGCTCTGCTCGCGTTGGACAGCAGTCTCTCTACG
CGTCGCCGAAGAGCCGCGGTGGCATTTCCGTCGCCCAGGCGCGGCGACCC
TCCTCGGTACGTCCGCATGGACGTGTGCTGCAAGAGGAGACCCCCACTGT
CATCACCCCCATTGTCGAGTACGGGACCAAGTTGCAGATCTTCATGTGCA
ATCCTAGCCTGGAAGCGCAGGGAAACGACGCACATCTGGTGGATGAGGCG
AGGTTGGCCGCAGCACTCAGCAATATCAGCGGAATCAAACAGGTGAGATT
GATGCGGTGCCCCAAAATTTCCAGTGCTGGAGTTCGTTCAAAGGAAACTC
CGCTGTAATTATTGACGCAACTTCAGGGTCTCGCCGCCAACACATCGTTC
ACAGTTCACAACGGCATTTCCATACATAGCGGCAGCAGAAGAAGCAGCAG
CCAATGCGTCGCAGACCTGTGGTGTGTAGAAACTACTATTGTAGGCAAGT
GCGACGCTACTCGGTAGGATGTAGCAGCACCAGTAGAGGTACCAAAGCGA
CCCACAAATAAAACGTACGAGCCAGTGCTACCGAGCGTGCTGGCTGCCTC
GCCAAACCCGCCCGGTTGCTGTCGCAAACAGCTAGCTACTACGCGGTTGT
TATCATGTATACCCCTCGGTACAATTTCCTGATTTTTTCCTTTTCTACCA
CTGCTGTGCTGTGTACCGTACCAGGCCGATGAAAGTGACATCACGGTAAC
GATCAAGACGGAGCCGGTGGATGTGGACGACGTGAGCTACATGTGCGACA
CAGACGGCATGCTACAGTGGCACGCCCAGGTCGAATACAGTGCGGCTTAC
GCCGGCTCGAGAGACACTACGCCGGCCGTACTGGCAGCTCAAGCCAACGA
CTACGTGGCGTACTCGTCTTCCGAGTTCAAGGCATTACTGGCCGGATTCA
TCAATGCTGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig16285:48..1208-

>mRNA_Ecto-sp13_S_contig16285.4552.1 ID=mRNA_Ecto-sp13_S_contig16285.4552.1|Name=mRNA_Ecto-sp13_S_contig16285.4552.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=729bp|location=Sequence derived from alignment at Ecto-sp13_S_contig16285:48..1208- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCGTGATGAGCTACTGAAGAGGTCTCGCCGAGGTGCTGCTGTGTC
GGCAAGACTCGTGAGGACAATGCCTGCGGCAAGGGCATCGTCATCTTCGT
TGAACCCGTGGGTCGCGCGAAGGTGGGGGTTGGTCATTGCGGCAGTTGCG
ACAGTGGCCACCGTCGCCTTCTCGCTGGGGACGACGGCAAGTACCTCGAG
GTCCGGTGCGATGACCGGCTCTGCTCGCGTTGGACAGCAGTCTCTCTACG
CGTCGCCGAAGAGCCGCGGTGGCATTTCCGTCGCCCAGGCGCGGCGACCC
TCCTCGGTACGTCCGCATGGACGTGTGCTGCAAGAGGAGACCCCCACTGT
CATCACCCCCATTGTCGAGTACGGGACCAAGTTGCAGATCTTCATGTGCA
ATCCTAGCCTGGAAGCGCAGGGAAACGACGCACATCTGGTGGATGAGGCG
AGGTTGGCCGCAGCACTCAGCAATATCAGCGGAATCAAACAGGCCGATGA
AAGTGACATCACGGTAACGATCAAGACGGAGCCGGTGGATGTGGACGACG
TGAGCTACATGTGCGACACAGACGGCATGCTACAGTGGCACGCCCAGGTC
GAATACAGTGCGGCTTACGCCGGCTCGAGAGACACTACGCCGGCCGTACT
GGCAGCTCAAGCCAACGACTACGTGGCGTACTCGTCTTCCGAGTTCAAGG
CATTACTGGCCGGATTCATCAATGCTGAG
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